ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX20230570 | Ishikawa
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◣ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

LRP6
KMT5B
CALM1
CTNNB1
CLTC
B4GALNT3
MTF2
BRWD1
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
ATAD2
ZC3H6
NOTCH2
DOLPP1
DDIT4
MXD4
CALM2
KPNB1
CALM3
PPP5D1
CCDC88A
TMEM41A
CCNL1
NXF1
PHIP
HEXIM2
SOD2
WTAP
CKS2
SECISBP2
STX18
ARNTL
MRPL21
IGHMBP2
PIK3IP1
MRM3
GLOD4
LAMP1
PRKACA
UBC
DIP2A
KDM4B
ZFAND2A
TRIP12
FBXO36
SSNA1
ANAPC2
KMT2D
RHEBL1
SPATC1L
EIF2D
PKM
NCBP2AS2
NCBP2
TOB2
TCF3
MCM7
AP4M1
NAGPA
CYP51A1
SNRNP70
PDE6D
COPS7B
ADNP
ENDOV
TBL3
RPS2
RNF151
NOXO1
RCL1
ATG14
RERE
SCGB1C2
SCGB1C1
ODF3
ADK
SESN3
CHD2
IST1
MRTO4
EMC1
PNRC1
HEXA
TSPYL2
SEC13
ZKSCAN2
TAF5
TMEM222
TSC1
GFI1B
GPAM
KCNIP2
PCID2
CUL4A
DYRK1B
WASHC2A
WASHC2C
KCTD9
CDCA2
CYCS
HAGH
FAHD1
RPLP1
UBQLN1
MTERF4
SPATA25
NEURL2
CTSA
ZSWIM1
PIK3R3
NBPF1
MANF
RBM15B
UBE2D3
PEPD
GHITM
PBLD
HNRNPH3
SPRYD3
ADPGK
MAIP1
DSTYK
ARF4
IPO11
DIMT1
PRTG
ARHGEF12
HOXD9
HOXD8
H2AX
DPAGT1
HMBS
ZNF212
UBE2B
CDKL3
PSMD3
CORO7-PAM16
CORO7
DNAJA3
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
TSN
MRPL58
PI4K2A
MORN4
SPRED1
LAT
SPNS1
IER5
VCP
FANCG
CCDC77
KDM5A
CASC3
WDR25
WARS1
TBCB
POLR2I
OVOL3
RCOR3
YPEL2
PDCD4
COQ9
CIAPIN1
APTX
DNAJA1
MYLIP
VPS37A
CNOT7
HSP90AB1
UBN1
GLYR1
MSMO1
ATXN2L
HMGCL
SLC9A1
TIMM22
FUS
HERPUD1
MCU
SRSF6
UBALD2
DOHH
FZR1
TRIAP1
COX6A1
ZSWIM7
TTC19
TMA7
CCDC51
ATRIP
TOMM22
IP6K2
MVD
OPA1
TCF12
EIF4A2
WDR53
FBXO45
MTMR2
COPS8
TMEM199
SEBOX
POLDIP2
PINX1
SP2
DDX23
GTF2H3
EIF2B1
WASHC5
NSMCE2
POMZP3
OAZ1
ACSL3
TOB1
SMN2
SMN1
KDM4A
NMNAT1
LZIC
USP42
RCOR1
CALR
RAD23A
AMIGO3
GMPPB
FRA10AC1
NUP214
HNRNPAB
TIMM50
POLR3D
FBF1
PPIL4
RASEF
TULP3
HMGB1
USPL1
C8orf33
SUMF1
STX16
POLR2J3
VAMP2
PER1
NUDT15
HOXD10
POLG2
DDX5
CEP95
NABP1
TAOK2
IDI1
WDR37
TOP2B
COQ7
FOXJ3
TMEM88
KDM6B
TXN2
NLK
RPS28
NDUFA7
MRPL4
CCDC134
ZWILCH
SNAPC5
RPL4
AJUBA
RBM42
MRPS35
MFN2
AP5Z1
MYBL2
FDFT1
ZNF718
ZNF595
ZNF721
PIGG
TMEM104
NAT9
USP30
PPT1
RFX3
DUS2
DPEP2NB
DDX28
TARBP2
MAP3K12
NPFF
DIABLO
PGP
E4F1
BRICD5
FBXO28
PSTK
FAM207A
DNAJB12
GTF2IRD2
GTF2IRD2B
TNKS
SYNGAP1
CUTA
PHF1
GTF3C5
NUP188
DOLK
GABPB1
MAN1A2
H2BC21
H2AC21
H2AC20
MARCHF8
FAM180B
NDUFS3
KBTBD4
SARAF
ZFAND4
PSPH
CCT6A
RPL22
RNF207
VDAC2
TEDC1
CRIP1
PACSIN2
DDAH1
CCN1
YWHAQ
TBCCD1
DNAJB11
CNP
MRPS16
DNAJC9
RPLP0
GCN1
DCP1A
ZNF839
HNRNPL
PARL
EIF3F
ID2
ZNF148
NOC4L
DDX51
ATF4
AMOTL2
U2AF1L5
U2AF1
PELP1
ARRB2
LMTK2
UHMK1
TAF15
CRBN
LONP1
CATSPERD
DIP2B
APLP2
FEM1C
CDH1
RLF
PCIF1
EIF3A
SLC44A2
CLDN6
TNFRSF12A
THOC6
HCFC1R1
ECSIT
CNN1
JPT1
SFR1
AURKAIP1
ZC3H3
CTDP1
TEPSIN
NDUFAF8
DCAF8
VCPKMT
ZNF337
RPS5
ATG7
POLR3E
GOLGA1
CCNG2
PALB2
DCTN5
WDR43
MFSD11
METTL23
SRSF2
TMEM11
TDRKH
FAM131A
WDR81
SLC38A2
TLCD2
TFRC
NFYC
PDE4DIP
C16orf89
ALG1
GET3
SLC9A3R1
ARHGAP19
CCDC130
TIMM21
FBXO15
ARRDC4
TMEM79
SMG5
CDKN2AIPNL
PACSIN3
ARFGAP2
LNPK
FAM53C
CDC25C
ATAD3B
RRBP1
RUBCN
MICU2
SUMF2
DDX50
CFAP410
ARHGEF7
ULK2
CACTIN
COMMD1
CCT4
EIF1
TPM1
PTPN6
C12orf57
ATN1
PRDX1
PKN2
ETNK1
GXYLT1
NDUFS7
TTC4
MRPS15
MRPL39
SLC25A28
PTP4A1
GABARAP
EEF2
ELP5
CTDNEP1
CLDN7
MEF2D
CDKN2C
ZER1
FAF1
ATP8B1
CMTR1
RPSA
CLCN7
CEP192
EIF5
GTF2I
TK1
AFMID
ABRAXAS2
EEF1AKMT2
TMEM217
TBC1D22B
HAUS1
ATP5F1A
C19orf48
GSTO2
GIPC1
TMEM128
TXNDC15
LATS1
TPRN
TMEM203
NDOR1
DNAJB1
TECR
SMPD4
MZT2B
IER5L
RAB4B
MIA
FARSA
GTF2B
LANCL2
COQ8A
C4B_2
C4B
STK19
LOC110384692
DXO
C4A
EPHB3
FAM204A
EDF1
YEATS4
COQ10A
ANKRD52
PHAX
ALDH7A1
STX6
RNASEH2C
KAT5
TRMT61B
DYNLL1
CREM
ADARB1
PPP1CA
RAD9A
PNRC2
RHNO1
FOXM1
OAZ3
CAPN10
ZNF518A
TFDP2
PSME3
BECN1
KLF10
RPS3
PARPBP
NUP37
ATP9B
CNOT1
NOP14
GRK4
TENT5C
STARD7
PANK2
SUCO
NDUFB8
HIF1AN
ANXA7
KLF5
PRSS22
SLC2A1
THOC3
VAMP1
CRY2
CFAP20
ATP6V1C1
TMPO
SH3GL2
MRPL20
CCNL2
PEX3
ADAT2
DBNDD2
MTHFD2
RUSC2
ACAD9
XPO4
MARK3
RRP7A
UQCRC1
VCL
SHBG
FXR2
H2BC5
H1-4
GSTT4
CABIN1
PCNA
TMEM230
AARS2
ZNF398
ZNF425
MRTFA
HMGCS1
ZNF124
UNK
H3-3B
PCCB
DPP9
C6orf226
SRSF11
LRRC40
POLG
TMEM42
PTEN
KLLN
TAF1B
TMEM262
ZFPL1
CDCA5
ZFAND5
ZBTB20
DDX1
GNB2
IL4I1
NUP62
ATF5
WDR61
ELF1
WBP4
SF3A1
CCDC157
SRRD
HPS4
TOP3B
HSP90B1
C6orf132
SPOUT1
DCAF10
CSRNP2
ZNF594
HDAC4
NDUFV1
MAPK11
NRL
SLC25A42
PCK2
FBXW2
TSNAXIP1
RANBP10
GARS1
DEXI
CLEC16A
NSFL1C
CHCHD1
FUT11
SLC35B1
SFPQ
RNASEK
C17orf49
ABAT
BCL6B
ASF1B
TDRD9
ATP5MPL
NEK9
GID4
ATPAF2
STAT1
RPS26
ASCC1
ANAPC16
CCT2
ZFAT
SLC25A38
BCKDHB
PITPNM1
SERTAD1
PRX
VRK2
SMIM13
ANKRD17
TEDDM1
GLUL
PSMD8
LDHA
RNASEH1
EXOSC8
ALG5
PGAM1
FOS
SNX13
SURF6
MRPS7
MIF4GD
GGA3
HOMEZ
UBB
FAR1
PDK2
SETD1A
ORAI3
NBN
TIMM44
LRRC57
HAUS2
PLEKHM3
NOM1
RAD50
SLC35E3
CLIC4
EFCAB2
PFDN2
NIT1
UBIAD1
STRIP2
NDUFAB1
MRPL37
CYB5RL
ASNS
ATP6V0D1
AGRP
P2RY11
PPAN-P2RY11
PPAN
ANGPTL6
ZNF517
ZNF34
RPL8
RANBP2
C14orf93
PIGU
THBS1
ICE2
C10orf143
LGMN
TSEN54
CASKIN2
LLGL2
STARD4
STIP1
TEKT2
ADPRS
KPTN
FBXO24
LRCH4
NOCT
SPTLC1
SFSWAP
MAEA
MALSU1
PPRC1
H4C14
H3C15
H3C14
H2AC19
H2AC18
H4C15
RPS6KB2
PTPRCAP
TPP2
PRRT2
MAZ
FAM161B
COQ6
WDHD1
SOCS4
ZFP1
CBWD5
CBWD3
CBWD6
PMPCA
ENTR1
SIVA1
SLC39A5
RNF41
NABP2
CEP55
LUC7L
FAM234A
MON2
NAGK
ZBTB45
SLC27A5
ACTB
FAM133B
SMIM41
ATG101
BLOC1S2
SMIM12
H3C13
H2BC18
LASP1
TBRG4
KCTD7
BICD1
AVPI1
LRCH3
HTRA2
DQX1
MAN2C1
ORMDL3
GSDMB
VPS33A
TIPARP
MKNK2
GRHL2
PSMD6
MTG1
FNIP1
RPUSD4
FAM118B
TIGAR
DNAJC3
REXO1
NDUFAF3
IMPDH2
DALRD3
TAGLN2
RAB8A
HDAC10
TUBGCP6
NOL7
PLAG1
CHCHD7
ANAPC1
ARL6IP1
SCFD1
ZNF672
WDR6
METTL9
HBS1L
PHF5A
ACO2
IARS1
MCCC1
SPRYD4
FRG2C
MRPL40
HIRA
RPP38
ACBD7
HSPA1L
HSPA1A
LSM2
MAPKAPK5
ZBTB8OS
RBBP4
SLC25A41
KHSRP
PCNX4
PCDH9
SRPRA
TIFA
CNTRL
C5
ZNF775
CCNA2
CAPZA2
RTF2
WDR4
TOMM40
CZIB
PAK4
ZC3H10
RPL41
ESYT1
SCNN1A
LTBR
CFAP43
HPS5
GTF2H1
H1-10
YIF1A
TMEM151A
MFSD14A
TRIP4
PCLAF
GCHFR
RMDN3
CAAP1
SUPV3L1
HES1
SH3GLB2
MIGA2
ALDH3A2
CHPF2
ABCF2-H2BE1
ABCF2
PCBP2
TMEM109
PRPF19
SENP2
PITRM1
SNRPD1
EXT1
CNIH3
KHDRBS1
INO80
PHF23
DVL2
ATXN2
MMAA
C2orf69
DOK7
PALLD
RPL17-C18orf32
RPL17
C18orf32
GADD45G
TRIM13
EXO5
DCPS
ARL4D
EPN1
CANX
ACOX3
TRMT44
TOP3A
SMCR8
DCP1B
CALU
HSPE1-MOB4
HSPE1
HSPD1
SNAPC3
PPP4R3A
MATR3
MARCHF3
EHD4
ING5
BOD1L1
WFDC3
DNTTIP1
NTMT1
C9orf50
NCL
DLG4
ACADVL
RBM4B
DPY19L4
GPX1
SYCE2
C4orf36
ANXA2
SLC7A6OS
PRMT7
CLN8
SPG11
ATXN7L2
CYB561D1
CLASRP
EXOSC6
ATF3
PGM2
MAP4
FEM1A
STYXL1
MDH2
C16orf95
SELENOI
ADGRF3
MAPKBP1
FLYWCH1
MAGEF1
TXNL4A
SC5D
TMEM170A
DNAJC10
TPT1
CNBP
FREM2
AFF1
SMIM10L1
PRH1-TAS2R14
PRH1
UBL5
NARF
CYBC1
PIN1
FAM71E1
EMC10
BRIX1
NELFA
BUD13
MAML3
SHC1
EIF2B5
PYGO2
PBXIP1
LOC101928120
HACD2
PDF
NIP7
COG8
MED4
C2orf42
LPCAT3
KLHL12
SRSF5
WDR18
RNMT
FAM210A
MVK
MSTO1
RPL6
PTPN11
ZSWIM6
DTX2
PA2G4
SUPT5H
RPS16
PLPBP
CYP20A1
PDIA4
USP32
SH3BGRL3
GPN2
TTC21B
ERCC6
HGS
ARL16
BCL2L1
C5orf51
FAM156A
FAM156B
NDUFV3
AHCTF1
COA6
UBAP2
NDUFS6
MRPL36