ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9607666 | NTERA-2
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◣ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

H2AW
GPR35
ZGPAT
ARFRP1
SOAT2
LINGO4
DYSF
CLEC4G
MUC20
TRABD
OTP
LMOD1
KIF21B
MAMDC2
MAP3K6
NR2F6
PRSS47
LFNG
CYP1A1
FOXK1
KCNJ4
GALP
TMEM59L
CRLF1
SLC16A8
KLF16
EXOC2
LINGO1
CYP26A1
SPIB
SH3D21
HPD
CDX1
LDB3
GJB6
PLEKHA6
BIRC7
IGFBP5
ZNF746
AGO1
SFXN3
PDZD7
TCTEX1D4
BTBD19
NAT8L
SERPINF2
GLI1
CCDC120
PNPLA6
ADGRA2
NODAL
TRIM46
MAPK15
FOXL2NB
FOXL2
CATSPER4
WIZ
SSBP4
TRMT112
PRDX5
LEFTY2
INPP5B
RHOT2
RHBDL1
TYROBP
HCST
SH3BP4
METTL11B
PSMG3
SSTR5
BHLHA15
MYL10
ITGB2
VWA1
SERPINB9
ZNF79
KMT5C
WFIKKN1
RIPOR1
KRTAP12-1
NAPSA
SKIL
GABRB2
ZBTB46
CADPS
COL4A2-AS2
RXRB
SLC39A7
COL11A2
ERCC1
TNFRSF6B
TPPP3
KCNQ4
PLD2
DNAJB5
TTYH3
CCL26
SHANK2
ARRB1
NUP93
PAX7
LAPTM5
C7orf33
BMF
PLCB3
N4BP3
MDM2
RCC1
PDE6B
CPLX1
FBXO41
HTR6
TLX2
SH3PXD2A
TPRA1
CCDC88B
DLX5
CDK18
SH2B1
COX5A
PCDH1
SOCS3
LAMB2
UNKL
LHX4
KRTAP10-12
PLPP2
TRPV4
SERPINB6
GRWD1
NBEAL2
EXTL1
LZTFL1
CCDC12
KCNF1
ADAMTS2
PRELID3B
APOBEC3G
LAMA5
PTK6
RNF208
SCYL1
TNNC1
NISCH
ANKRD23
PDE12
BRI3
JUNB
ATP2A1
SLC6A12
LY6E
SPATA25
CTSA
NEURL2
CRELD1
TBX6
DNAH1
YPEL3
MEGF8
DIPK1B
USP3
APOBEC3D
CASD1
PMEPA1
SNCG
MMRN2
RUNX1T1
ANTKMT
METRN
SERPINE1
RCVRN
PANK2
CD7
EVPL
DBH
LIMK1
SLC26A11
LIF
TRIP10
GPR108
MAP11
MACF1
FXYD3
NUDT8
NUP210L
LSP1
CRYBG2
ATP2B2
IL12RB1
ATP6V0A4
PKNOX2
SPN
STEAP3
HPDL
GLIS2
FAM110D
MTRNR2L1
EIF4A2
FGF4
PLCB2
PRAM1
AHDC1
AKIRIN1
CYSRT1
CBFA2T3
SULT1A1
CRIP2
PCBP4
GPR62
LEFTY1
C15orf39
TST
MPST
NBPF15
ZMIZ2
AHSP
SEMA4G
TTC7A
MCFD2
TRAPPC3
MAP7D1
PFKL
ARL8A
TRIL
MAPKAPK2
A4GALT
TCF7
DYRK3
HOXB1
GAMT
FRMD1
ANKRD33
ARHGEF16
HOXC4
CAMKK1
KIF19
LHX6
TP53I3
RIPOR3
TCEA2
TAC4
MBD2
NCS1
GATD3B
GATD3A
CCDC22
CACNA1F
CDC34
CARD14
GCK
DPEP3
PRR5
PRR5-ARHGAP8
SNX16
ADAMTSL4
CITED4
CORO6
YJEFN3
SNED1
GALNT9
ZNF554
IFNLR1
DMPK
LOC105376731
GRM4
CYB5R2
FAM166C
CPE
MXRA8
ORMDL3
RPS8
ADAD2
UCKL1
RNASEK
C17orf49
FSCN1
MIDEAS
OTX1
CHCHD10
C22orf15
LMF1
SOX8
TLN1
CREB3
HAPLN3
MINDY2
TLE6
TRIM48
ADGRA1
SPACA6
SOX5
IL24
CNOT2
INHBE
LDLRAP1
PITPNM2
CEP295NL
RARB
PRTG
DUX4
SLC51A
ZDHHC19
MYH11
DHDDS
BABAM2
RBKS
GPR162
AP1B1
SIM2
PCTP
GUCA2A
BCL7A
SHANK1
CLEC11A
LGR6
TEAD4
ATP6V1B1
SPATS2L
HEY2
SKIDA1
CFAP20DC
TDRD10
DUSP23
ZFHX3
DLC1
MYEOV
LRIG1
WDR18
DONSON
HECTD4
WBP1L
HOXA1
NR2C1
CPA1
POLR2H
CLCN2
MCF2L
CCDC33
NRSN2
ATP8B3
LHCGR
MYRF
SULF2
SNX12
ZNF615
PGF
MAB21L4
HUS1
FGR
PLCH2
ANTXRL
PMF1-BGLAP
PMF1
AGAP2
PALD1
MAPK12
KLK7
TLE1
TWF2
EFNA2
MEGF9
APC2
TP53INP1
ANHX
SF3A3
MDK
ANKDD1A
TIMP3
SVOPL
FBLN1
CSRNP1
CLDN2
CDC42EP2
DUSP4
SLC25A6
HEYL
ARPC1B
NR2C2
HPN
NPM2
CST6
KDM6B
CRABP2
DOK7
SNX8
GGT2
UPK3B
BRD2
ACP4
LOC105372440
KCNK6
SLC39A14
YIF1B
TBC1D1
B4GALT5
RGSL1
TSPAN18
PPP1R1A
UROC1
SPATA20
PPP2R3A
C17orf113
MTRNR2L2
MSH3
DHFR
CEBPE
AIFM3
BOK
WDR74
SDE2
CD244
NFE2
HOXB3
CHD7
HMX3
POLD1
LOXL1
SOCS2
FAM83E
RAB3IL1
RPRM
TTYH2
MTRNR2L8
AP5B1
THRA
FGF16
TNP1
ARHGEF35
CLEC4C
KANSL3
FER1L5
C16orf70
CEND1
EFNA1
EMP2
MYCN
COL9A2
MAN1B1
UAP1L1
STX18
FAM120B
TEX264
ARHGEF3
DLL1
KIAA0930
SLPI
RCAN1
SEPHS2
ZNF512B
ANKRD28
MMP11
DVL3
NES
DUS1L
COQ10A
SHH
CXCR5
ZPR1
APOA5
C5orf63
HELZ2
PLCD1
MBD6
DDIT3
PTGES3
SHISA5
UTS2R
FOXE3
AQP7
MEOX1
NR6A1
DMAP1
SMIM35
INHBA
CHST8
LHX2
COL27A1
RPRML
CORO2B
APBA2
NFIC
GDPD5
NECTIN4
TTLL10
TTC7B
FTL
GPC6
LOC102724265
CYBC1
RNF224
SMARCD3
SMIM5
RARA
CDCA7L
GPCPD1
SHISAL2A
KIAA1522
MSI1
UPF3A
TMEM37
GPSM1
TMEM132B
SRCAP
LOC730183
MAP2K3
MYLK3
IL17RD
CNTFR
FOXP1
ZNF346
IGFBP6
MUC3A
SLC51B
SBNO2
ADGRL1
TNRC18
NUDT16L1
NEFH
HAP1
IGSF21
XKR7
NUF2
NOL4L
PCGF3
SLC41A1
SLC4A2
CDK5
SUSD3
ETV4
GARS1
USP7
TMEM39B
FAM155B
SETD1B
CYBA
BIRC6
KIF13B
AP3B2
ATP1A3
RAVER1
S100A16
CDC25B
MOB3C
RASSF7
LMNTD2
NKIRAS2
SYT15
LOC102724488
MACROH2A2
LPCAT3
TRAF7
PGP
BRICD5
INTS10
MPP2
TTLL6
CTSZ
CLDN9
TJP3
PRKCZ
DACT3
FAM3B
NINJ2
RGS16
NAALAD2
NFAT5
ZFHX4
SEMA5B
CLIP1
ZNF710
TRH
ALLC
FRG2C
PKM
CCDC57
SIPA1
PLK3
PDE4C
OTOP1
VOPP1
GBA
FGFR1
GSN
CRB2
IKZF3
POMGNT1
ENO2
BCL11B
LRMDA
HHIPL1
MCPH1
ABCB5
CCDC85C
SPAG8
HINT2
SERPING1
SSR4
IDH3G
CAPN13
RSPO1
ECE1
GPX4
ISCA1
THEM4
FBXO31
MAN2C1
SERTAD2
ENTPD8
SERPINA10
AIFM2
IL17RB
CHDH
CPT1B
CHKB
ARHGEF5
LTA
TNC
CORO7-PAM16
CORO7
ANKRD9
CNR1
NEK3
NFYC
PDE2A
TNFRSF19
FOXJ3
SEMA6D
LDB1
TSPAN14
KRT24
TMEM240
ZNF385A
MT2A
ATP8B4
C1orf232
TTYH1
FAM169A
SLC30A4
NAA38
CHD3
PCCA
RSBN1L
FAM178B
CHD4
UTF1
WNT10B
ARHGAP40
UXS1
WNT1
SMG6
CYP11A1
PHLDA3
SECTM1
FLNC
SV2A
STK11
MYBPH
PELATON
C1QTNF8
NUP107
PUS1
PFN3
SLAMF1
HNRNPD
THPO
CHRD
EVPLL
C1orf198
NEUROD2
ICAM1
ARSI
SEC22B
RFX1
NCBP2AS2
NCBP2
NFE2L1
ASF1B
PEAR1
OBSCN
CNPY3
ZBTB7B
CA14
STRA6
SLC11A2
NYX
FGF19
NKX1-1
TMC6
TMC8
KCNH2
BOLA3
TRMT1
NACC1
KAT6A
RGPD8
RGPD5
RGPD6
SAG
XKR8
SLC24A1
SFXN4
DGKG
TTLL8
CCAR2
C8orf58
CEP131
RORC
NANOS3
TNS3
INPP5F
RNF183
ETNK2
PTP4A2
MGAT3
SEPTIN5
GP1BB
BFSP1
ATF3
DAB2IP
BCAP31
ABCD1
KCNB1
SPAAR
HRCT1
HOMER3
ZBTB7A
AIRE
TESMIN
ZNF202
SINHCAF
SCARA3
CHRNB2
TMEM184A
DCDC2B
PLIN2
TSGA10IP
TAF6L
SRSF10
GLIPR2
SIK3
ACSF3
TRPM1
FSTL3
PYGM
SIAH1
BBC3
NIPSNAP2
PGAP6
PDGFA
CFAP74
BTG2
MPV17L
DNMT3L
ZNF335
RABL2B
RABL2A
RWDD1
PSMD1
MAPKAPK5
TAOK3
SUDS3
NME6
NUP85
CACTIN
POLR3F
DZANK1
FAM187A
EFTUD2
CCDC103
NVL
IPO13
DYNC1LI2
VDAC2
GOSR2
HSPA9
VTI1B
POLR2E
PSMG2
CEP76
NUP205
MRPS7
GGA3
HADHB
HADHA
RPL21
NCLN
EXOSC5
BCKDHA
TBCK
AIMP1
C19orf48
BLCAP
DCTN1
TSNAX
REXO1
SLC35B1
ATP5MG
STAM
TSN
STAM2
SEC61B
FARSB
PSMD12
LYRM4
FARS2
SRD5A1
NSUN2
PES1
PNO1
PAK1IP1
C6orf52
RBBP5
UPF2
SKP1
ZNF576
IRGQ
NDUFA4
ZNF503
COX7A2L
CAPRIN1
SART3
ISCU
ACTR10
ZRANB2
GOLGA5
TTC8
DPH6
IQCG
SUPV3L1
VARS1
PI4KB
TMED1
RPL35A
RPS23
ATP6AP1L
RPS12
SMC2
MRPS5
ANAPC7
FAM104A
C17orf80
RABGGTB
SELENOF
HS2ST1
USP1
MRPL11
PDAP1
BUD31
PCBP1
EIF4ENIF1
UFM1
ADK
XPNPEP3
ST13
RPS27A
CLHC1
AP3M1
ICE1
APOM
BAG6
PROSER1
NHLRC3
FRG2
COMMD1
CCT4
SF3B3
COG4
OSGEP
APEX1
RPS29
PAF1
MED29
TM9SF1
NEUROG2
NFKBIL1
DDX39B
ATP6V1G2
LRR1
NEUROG3
CCDC200
HES1
PIN4
OR6B2
NDUFA10
PTGES2
OAZ3
SUCLG1
UBE2I
HES3
ARHGAP11A-SCG5
ARHGAP11A
TAF9
RAD17
AK6
STK36
RNF25
MRTO4
EMC1
HOXA4
CDX2
VEZT
FGD6
FZD8
SPATC1L
ARID3B
SEC11C
RPL7
RDH10
EIF2S3
GADD45GIP1
BICRA
SYBU
CDC73
HOXA3
PMAIP1
ID2
IER3
FLOT1
C16orf91
ARHGAP10
RPN1
GORAB
TMEM107
NDUFS7
GTF3C4
DDX31
ZP4
DHRS3
NEUROG1
ATOH1
NEUROD1
CNPY2
DPP9
SP2
BNIP3
KAT6B
ZNF383
BBS9
IGFBP2
LBX1
TPM1
TLE4
MRPL38
DNAJB7
TLE3
PHOX2B
SPCS1
GLT8D1
PDHX
APIP
TTI2
HOXA2
ST18
TBX3
DUSP6
INSM1
LIN28A
METTL24
ASB2
PCBD2
TEPSIN
NDUFAF8
ERRFI1
ADAM18
ANKLE2
DNM2
PCGF1
LBX2
NBAS
COL23A1
TBX2
ALKBH5
P4HB
MLEC
PRUNE2
CS
TMEM70
ELOC
DLL4
SP5
RPS10-NUDT3
RPS10
AXDND1
PDHB
SMAD3
SYNPO
CLGN
DAPL1
DLX4
LPIN1
NPAS4
CAMTA1
ID3
ARHGEF28
MRPL34
PDE4D
DOLPP1
DCTN3
RAB5B
ARRDC4