ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX6039037 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◣ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

RABL2A
RABL2B
MAPKAPK5
ZNF335
PSMD1
CACTIN
ZNF503
DYNC1LI2
NME6
POLR3F
DZANK1
RWDD1
TAOK3
SUDS3
VTI1B
PSMG2
CEP76
IPO13
NUP85
FAM187A
EFTUD2
CCDC103
VDAC2
NVL
GATA4
STAM2
HOXA2
LYRM4
FARS2
SKP1
HSPA9
NCLN
GOSR2
TBCK
AIMP1
UBXN10
UPF2
DCTN1
SRD5A1
NSUN2
POLR2E
NUP205
ATP5MG
IMPG1
IFI16
TSN
DUX4
REXO1
EXOSC5
BCKDHA
COX7A2L
MRPS7
GGA3
SEC61B
FRG2C
BLCAP
C19orf48
STAM
MRPS5
TSNAX
ACTR10
ICE1
NTRK2
SLC35B1
RPL21
GOLGA5
TTC8
VARS1
PSMD12
PNO1
ARHGEF10L
FARSB
SUPV3L1
HADHB
HADHA
BBS9
PES1
FAM104A
C17orf80
HOXB3
HOXB5
PI4KB
HAND1
PAK1IP1
C6orf52
EIF4ENIF1
RABGGTB
USP1
MECOM
ZRANB2
ZNF576
IRGQ
ETFBKMT
XPNPEP3
ST13
BABAM2
RBKS
ADK
AP3M1
UBE2I
SMC2
ANAPC7
SCRG1
CELF4
UFM1
RPS23
ATP6AP1L
TM9SF1
ADAM18
LAPTM4B
DPH6
RPS12
RUNX1T1
IQCG
RPL35A
LRRN4
CAPRIN1
ERI3
NDUFA4
SF3B3
COG4
SART3
ISCU
PCBP1
PAF1
MED29
TBX2
SELENOF
HS2ST1
PROSER1
NHLRC3
NFKBIL1
DDX39B
ATP6V1G2
RBBP5
SUCLG1
CLGN
MRPL11
TMED1
RPS27A
CLHC1
NEO1
OSGEP
APEX1
OR6B2
NDUFA10
SIRT4
APOM
BAG6
TBX3
NR2F1
COMMD1
CCT4
OAZ3
DMD
HOXC4
HOXC6
VPS13A
OBP2A
CITED2
CCN1
DMAC1
ELOVL6
HEXIM2
KDM2B
HOXA4
HOXA3
PDE12
PTGES2
CD244
UNC5C
RARB
BICRA
NTAQ1
MRTO4
EMC1
SHOX2
RSRC1
PRXL2A
ANKLE2
HES1
LIN28A
MEIS1
PDAP1
BUD31
NDUFV2
ZAP70
LZTS1
PLEKHF1
STK36
RNF25
TMEM141
EIF2S3
PRUNE2
PLAGL1
TLE3
NUBP1
DIAPH3
MELK
CXXC4
TMEM120B
KRTAP23-1
PDE6B
CPA1
DCTN3
ARID3C
RPL7
RDH10
ZNF608
PIN4
CYP26A1
FAM205A
ZFHX4
SNCG
MMRN2
MGST1
METTL24
SKIL
SLC19A2
WT1
SSH1
TAF9
RAD17
AK6
TPM1
RARA
TTI2
EMP1
P2RX6
FRG2
CNR1
NXPH2
ASPG
ADAMTS8
ZNF3
COPS6
ACKR3
TMEM9
ARHGAP11A-SCG5
ARHGAP11A
TYRO3
HIP1
ID2
MRTFB
ERVW-1
PAEP
FLVCR1
FOXP2
SEH1L
PPFIA2
HOXB9
COLEC12
TLE2
NIBAN1
MEOX1
TMEM14B
ZGPAT
ARFRP1
CATSPERG
PACRGL
PGPEP1L
LIX1
KIAA1217
RPN1
POP5
USP34
ZNF587B
LRIG3
GADD45A
LYPD1
SOX5
SEPTIN9
NEMP2
CCDC200
GC
FGF7
PLCH2
CNPY2
PKDCC
RPS24
POLR3A
SPTBN1
HOXB8
HOXB7
GOLGA8K
TMEM107
BNC2
TUBB
MDC1
PPP1R3D
FAM217B
SCMH1
SH3RF2
ACVR1
TNP1
NDUFS7
RBPJ
HOXC5
EIF3D
CCDC183
CFLAR
PEDS1-UBE2V1
PEDS1
POLR2D
CYP51A1
KDM3A
PCDH18
GABRB2
SERINC3
RPS29
LRR1
SLC48A1
KRTAP13-1
DSCAML1
ZBTB18
TXNRD1
GADD45GIP1
HOXA6
HOXA5
PCDH15
SPRR2F
TLE4
CCDC174
SMAD3
ITGA3
SACM1L
FBXO34
CNTN1
SALL4
AKAP12
RND3
ABCC9
ZFHX3
POLDIP3
SVOPL
PKNOX1
SEC11C
TMEM14A
ADRB3
NAGLU
FEM1B
EVPL
METTL25
CCDC59
TMSB4Y
KANK1
ZSWIM6
FZD8
CBFA2T2
POU2F1
SH2B1
NBAS
MYPN
FAM72C
FAM72D
AQP1
H2BC5
H1-4
GOLGA8H
PDZRN3
AKAP13
TCF7L2
EYA1
ERCC1
CDC42EP3
CDIN1
SLC22A5
VANGL2
SIPA1L1
GPR82
GORAB
ZNF383
REC8
ECHDC1
CAPN7
NPM3
FGF8
RAPGEF4
HERC6
TBX18
SVEP1
SNX16
IGF2BP3
C9orf153
GTF3C4
DDX31
HUS1
PPP1R21
CDC73
RNASEH2B
CCN2
MPDZ
NELL2
BCL11B
SLCO2B1
SORBS2
GFRA3
SCHIP1
SPRY1
SFXN3
PDZD7
C1orf105
PGF
NNMT
MXD1
FOXP1
TRPS1
SPIRE1
RBM20
HMX2
MXRA7
C12orf29
OSBP2
GYPC
PFKFB3
NFIB
RCOR3
FSIP1
SLC7A7
ZNF341
ARL6IP5
UBA3
ZYX
FAM131B
HEY2
HMGCS2
ERCC4
ACY3
PDGFRA
NRG2
SCOC
SIGLEC15
PGK1
CDK6
WDR82
ASXL3
JCAD
MYLK3
TMCC3
R3HCC1L
ZNF430
ID3
TNFRSF19
KCTD7
GDPD5
ZP3
NT5C3A
GNGT1
HAPLN1
TMEM185A
USP17L20
USP17L22
RAB17
COPZ1
KIF4B
ZNF746
HNRNPD
OTUD4
CDH18
GPSM3
PBX2
RNF207
TYRP1
RERG
INPP4B
PDE6A
WDR74
ANKRD33B
CCDC175
ALKBH5
SLC7A5
VTN
SARM1
IRS2
RCOR1
SYNJ2BP-COX16
SYNJ2BP
VOPP1
MAD2L2
DRAXIN
GOLGA8T
ANXA11
CACYBP
FHL2
THRA
BNIP3
ABCA4
TCF4
MGST2
PLA2G2E
SALL3
DUSP6
SHB
SSBP3
CEP70
CFAP69
UBL4B
TRIP12
FBXO36
CD248
SLC9A3R1
ESRRG
CDK15
PCNX4
ZNF853
CDH3
WDFY3
NDUFB3
FAM126B
ENTPD4
ABLIM3
SERTAD2
ZNF280D
MID1
ACYP1
ZC2HC1C
PKP2
MYOM2
KRT8
KRT18
NR2F2
ZNF367
DLG2
CRKL
ZSCAN30
ELAPOR2
CS
OLFML1
MEGF6
ITGBL1
SLITRK6
ALPK2
PCBD2
CPPED1
DNAH12
HSPB3
MPPED2
WWP2
TNNT2
SPRED2
BNIP2
IL1RAPL1
PDHB
ATXN2L
CLASP2
RIPOR2
LIPC
DHRS3
CEP41
SNX8
SLC25A6
PLAAT2
PDCL3
MEIS3
C9orf92
CSRP1
HNRNPA2B1
CBX3
FNDC5
SUPT7L
SLC4A1AP
KAT6B
UBE2H
CELF2
QPRT
SLC28A3
GRWD1
CTF1
BCL7C
ADAMTS3
DIP2C
SSUH2
ELK4
RANBP17
GFRA1
RGS5
ARHGAP28
PAQR8
PMFBP1
DGKZ
SEC24A
GATA6
DNAJB4
ALX1
RASSF4
ART5
ART1
NEUROG2
MTRNR2L1
NEUROG3
MTRNR2L2
MSH3
DHFR
HES3
CDX2
VEZT
FGD6
SOAT2
IGFBP6
SPATC1L
MTRNR2L8
ARID3B
NFE2
PMAIP1
IER3
FLOT1
ARHGAP10
ZP4
SYBU
NEUROG1
ATOH1
NEUROD1
DPP9
SP2
LEFTY2
IGFBP2
LBX1
SEC22B
TRIP10
GPR108
SPATA25
CTSA
H2AW
ST18
NEURL2
HOXA1
INSM1
CDCA7L
ASB2
TEPSIN
NDUFAF8
ERRFI1
FGF19
DNM2
TPRA1
MAMDC2
CCDC33
P4HB
PDHX
APIP
PHOX2B
FBXO31
HPD
MINDY2
TMEM70
ELOC
DLL4
ANKRD28
SP5
C16orf91
DAPL1
DLX4
LPIN1
NPAS4
CAMTA1
ARHGEF28
MRPL34
PDE4D
KIF21B
DOLPP1
TLE1
STX18
RAB5B
SPCS1
GLT8D1
KANSL3
FER1L5
RXRB
ANK2
DONSON
UPF3A
PHC2
ATF6
SLC39A7
MSX1
COL23A1
SYNPO
PRRX1
SMPDL3A
OTUD7B
KATNB1
PPP6R3
ARRDC4
KDM6B
TRIB1
MRPL38
FRA10AC1
MYLK4
SQSTM1
CLCN3
BCL3
GPCPD1
XKR7
NINJ2
RARG
MFSD10
MTMR4
ABHD2
ABCC10
TOP2A
KCNAB2
ZNF687
ZNF718
ZNF595
PANK2
PCGF2
NBPF1
ID1
CCNL2
NRL
MRPS31
PSPN
ALKBH7
SMG6
CNOT2
MIDEAS
FURIN
BAIAP2
RFX1
ITGAV
ADAP1
NFKBIA
SMARCD2
STIP1
OSBP
EIF2AK3
PSMB3
ZFAND2A
RASSF5
RNF103-CHMP3
RMND5A
DCAF11
LRATD2
PPCDC
KNL1
PCNA
IQSEC3
GADD45G
SOD2
ATP5F1B
TRIM41
DNAJB7
NR2F6
AHDC1
RBBP7
KAZALD1
MDM2
ABHD8
SLC45A4
PCGF1
LBX2
KMT5A
LPCAT3
HMGCS1
AGO1
KDM8
JUP
CSF3R
RHBDD1
NLK
SMIM20
SP1
MALRD1
ANKHD1-EIF4EBP3
ANKHD1
RTN4
FTL
DYNLT1
ARSG
NCOA2
GPC6
RAB11B
G3BP1
B4GAT1
MYRIP
GLRX5
MACROH2A1
EVA1A
GRSF1
MUC3A
CRLS1
CCL26
RBFOX2
POLG
TLE6
FAM107B
RGS12
TRAF7
ARHGAP24
SREBF1
DDA1
SHF
PXYLP1
SPG7
TRIM46
MEIS2
PLEKHG2
METTL11B
MIDN
PSMD6
SOCS3
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
FST
PRMT5
ANTKMT
DAGLB
BFSP1
TMEM94
INAVA
SSBP4
LCK
FAM167B
NEK3
STAP2
MYEOV
HPCAL1
SLC6A12
NCDN
KIAA0319L
FGR
ZFP36
SLC30A4
PLEC
NELFA
ARAP1
STX1A
RGS3
H3C12
H2BC17
H2AC17
COX5A
SH3YL1
ACP1
MRPS28
ATP6V1E2
ANKMY1
SERPINE1
RAB37
FRMD3
LTBR
ADM
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
NKD1
CNKSR3
ARHGAP4
KMT2A
CAPNS2
BRMS1
EVI5L
LIG3
CPT1A
SMIM11B
SMIM11A
RHOQ
MRPS24
ILF2
RNF166
GATD3B
GATD3A
DNAJB3
LAPTM5
UGP2
PRDM10
HNMT
CDS2
PRKACA
AXDND1
TDRKH
HOXB1
MBD2
SYNJ2
DIABLO
CMSS1
CACNA1D
ARID5A
CSRNP1
RAC1
PHETA1
ARID2
MTF2
LFNG
ARID4A
INAFM2
GTF3A
LUC7L2
LNPEP
DMBX1
ZNF414
PNKD
FAM72A
SEC14L1
DLC1
HTR5A
IKBKB
CIC
MBD6
DDIT3
WTAP
UBE2F
ARL8A
ROGDI
MLEC
MSX2
TUBB4B
HMGB1
MT2A
TRABD2B
ANKRD1
AIFM2
COMTD1
IQGAP2
TCTEX1D4
BTBD19
TIGD1
EIF4E2
LRP5L
INSM2
IL6R
USP42
DUSP9
TPCN1
C12orf73
NRSN2
TUBGCP3
CFL1
RNPEPL1
LAMP1
RNF149
NR2C1
RNF34
CCDC88A
GOT1
ZNF77
CCDC88B
RASSF2
LRIG1
UACA
NCOA7
BHLHE40
SH2D6
H6PD
CR1L
NEDD9
EPM2A
SH3BP2
KLHDC2
PAX6
HOXB4
SYTL3
HSPA1B
ING1
RAI14
LMNA
PIKFYVE
IRF9
TLN1
CREB3
PIGV
USP3
CBX4
NRCAM
PRDM12
TRDMT1
EIF1B
CPSF4L
KRI1
CDKN2D
ZNF76
NCBP2AS2
NCBP2
RBM15
KLF6
CCL16
ZNF827
LRCH4
FBXO24
NHLRC1
SEMA5B
TRAF4
RPS10-NUDT3
RPS10
SLC25A19
SCAP
TRIM7
TES
ORMDL3
GPAA1
EXOSC4
PC
NKX1-1
MYADM