ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX6039040 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◣ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

RABL2B
RABL2A
ZNF335
PSMD1
IPO13
POLR3F
DZANK1
DYNC1LI2
CACTIN
NME6
NUP205
FAM187A
EFTUD2
CCDC103
MAPKAPK5
NEUROG3
PSMG2
CEP76
TAOK3
SUDS3
RPL21
NUP85
MRPS7
GGA3
VDAC2
NVL
DCTN1
HSPA9
RWDD1
VTI1B
GOSR2
TBCK
AIMP1
TSNAX
DPH6
STAM2
SKP1
HADHB
HADHA
STAM
POLR2E
C19orf48
BABAM2
RBKS
ATP5MG
SEC61B
PAK1IP1
C6orf52
SRD5A1
NSUN2
SMC2
EXOSC5
BCKDHA
ZNF576
IRGQ
ACTR10
MRPS5
NCLN
COX7A2L
TMED1
SLC35B1
TTC8
PI4KB
TSN
PNO1
NEUROG1
LYRM4
FARS2
PDAP1
BUD31
GOLGA5
FARSB
PDE6B
ADK
AP3M1
BLCAP
PES1
SUPV3L1
VARS1
FAM104A
C17orf80
REXO1
RPS23
ATP6AP1L
IQCG
RPL35A
EIF4ENIF1
ZNF503
CAPRIN1
UPF2
COMMD1
CCT4
ZRANB2
TM9SF1
SELENOF
HS2ST1
FRG2C
RBBP5
SART3
ISCU
CDX2
NDUFA4
USP1
PSMD12
NEUROD1
ANAPC7
ICE1
CDCA7L
PCBP1
UFM1
TMEM70
ELOC
APOM
BAG6
PROSER1
NHLRC3
OSGEP
APEX1
DUX4
DLL4
PAF1
MED29
MYRIP
SF3B3
COG4
ATOH1
MRPL11
RABGGTB
DLX4
XPNPEP3
ST13
ST18
INSM1
CABIN1
RPS12
PTGES2
PIN4
VEZT
FGD6
ZGPAT
ARFRP1
RPS29
LRR1
OR6B2
NDUFA10
RPS27A
CLHC1
EIF2S3
RBPJ
NFKBIL1
DDX39B
ATP6V1G2
FRG2
HES1
GALNT10
GADD45GIP1
RBL2
POP5
BNIP3
RPL7
RDH10
MBD2
TAF9
RAD17
AK6
DENND1A
GORAB
DNAJB8
PCBD2
TRIP10
GPR108
DTNB
LPIN1
ID3
ZNF746
RAB11B
MRS2
ANKLE2
NEUROG2
HSPA1B
WDR6
SHB
GADD45G
ANKRD1
MRTO4
EMC1
ACOT2
PDE12
SEC11C
STK36
RNF25
PRUNE2
DAPL1
FGFRL1
ZNF664-RFLNA
ZNF664
CCDC92
FZD8
GBX1
SEC22B
LEFTY2
PMAIP1
PDHX
APIP
HESX1
CCDC33
MSX2
TLE2
SKIL
NFE2
EHF
GTF3C4
DDX31
AXDND1
RYBP
NKIRAS1
NR1D2
ARHGAP11A-SCG5
ARHGAP11A
ZNF704
APLN
ALKBH5
TPRA1
ZNF383
SUCLG1
PLA1A
MBNL2
RPN1
MSX1
FRAT2
NXPH4
SPIN1
FOXC1
DUSP6
MAL
ZNF649
TIGD1
EIF4E2
PAX8
CDC73
ARHGEF38
MAST2
ACOT1
ID2
RARA
LIG3
GABRB2
TLE3
TVP23C
UBE2I
SPCS1
GLT8D1
LYPD6B
OAZ3
TRPM3
AP3D1
CNTN4
SRSF11
LRRC40
MEOX1
UPF3A
SLC25A6
S100A10
GSR
CCDC200
RTL10
GNB1L
FOXP1
METTL24
SKOR1
LIN28A
LMO4
FTL
CNPY2
GC
RAN
CERKL
TPM1
MELTF
KDM6B
HOXB9
RARB
RIMS1
RUNX1T1
BCAT2
BFSP1
RAD54L2
RSPO4
RBBP7
NEFH
OTX2
ANTKMT
METRN
B3GNT4
KRTAP2-2
KRTAP2-1
KCNK2
CALM2
CDX1
TMEM275
DMBX1
PRSS47
NTNG2
GSX1
CYP26A1
AP1B1
CBX4
TBC1D8
PDHB
TMPPE
GLB1
COL11A2
DUSP4
SLC22A24
GATA4
LCOR
PKDCC
SYNJ2
MKRN2OS
MKRN2
KAT6B
RPS10-NUDT3
RPS10
USP17L20
USP17L22
USP17L11
USP17L21
USP17L12
UBXN11
CD52
KIF21B
USP17L18
USP17L19
HOXB1
INKA2
MTCH2
ADM
BANP
APBB1IP
CLEC10A
PHLDB2
ZNF850
FBXO32
NAGLU
DUSP14
C15orf61
SHROOM1
CCDC174
WDR74
DDX3X
KRT8
KRT18
TNFRSF19
PCLO
OTP
ST6GALNAC3
COCH
SERTAD2
MRPL38
SMARCA4
KMT5A
HOXA3
SNX1
CIAO2A
BICRA
RNF207
GTF3A
CHN2
CPVL
STRADA
FOXP2
KAZALD1
LYPD1
KLF17
SNRPA
C19orf54
LPCAT3
MLH1
EPM2AIP1
BCOR
EIF4H
IRX4
C16orf91
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
RAB17
SOAT2
IGFBP6
SLC4A8
GALNT6
RBM26
GRHL2
HNRNPD
ZNF891
ZNF10
MEF2B
ZFP37
PAH
NRDE2
SMAGP
ASCL1
SEPTIN2
HDLBP
HECTD3
OTUD7B
REC8
PNPLA1
NCOA2
ZMIZ2
KMT5C
H3-3A
PCDH8
RNF32
MYSM1
PLEKHA6
CNR1
TMEM88B
ANKRD65
SLC30A4
TCHP
TCF7
CLDN9
TACC1
SCAMP4
ADAT3
KCNJ4
CLDN15
CNPY3
JAKMIP1
WNT3
COL23A1
DYNLT1
ZNF436
ATP6V0A4
MACROH2A1
JAK1
MACF1
TAS2R8
TAS2R7
MTRNR2L1
HOXA1
ZNF397
VENTX
TMPRSS4
JUP
METTL11B
BRWD1
SPATA25
CTSA
NEURL2
ZNF395
FAM53B
PCDHAC1
AQP7
SYBU
CEMP1
USP44
AGO1
STX18
NR2C1
USP17L15
KCNB1
MARVELD3
KMT2A
NRG1
SH2B1
PCTP
CDS1
SEMA6D
GATA3
PEX14
DFFA
KRTAP12-1
SERPINF1
ZCWPW1
MEPCE
RPS24
POLR3A
MECOM
ESRRG
BEND4
EOMES
OR51T1
MAPRE1
SERTAD3
FBXL4
MAPK12
ANXA9
GYG2
CNN2
RUSC2
KCNN2
SH3YL1
ACP1
KCNS3
P3R3URF-PIK3R3
P3R3URF
HINT1
STON1-GTF2A1L
MDM2
PRELID3B
AKAP10
GJA10
BAMBI
CLEC4G
COX5A
ADAM17
ERI1
ERRFI1
SOD2
ACAT2
TARBP2
MAP3K12
PRKD1
ACYP1
ROGDI
ZC2HC1C
SLC35E3
ZBTB25
ZBTB1
PKIB
LIPK
EVC2
EVC
NELFA
PRDM10
NANP
TRAP1
ZNF248
PLXNB1
CS
CNOT2
UFSP2
C4orf47
KDM3A
IGF2BP3
DNAJB5
CENPBD1
CTF1
BCL7C
BTBD3
PFN2
RBBP8NL
MRPL34
ABHD8
LIX1
YTHDF2
MAP2K3
CDC42EP3
SLC40A1
METTL27
ZNF90
CLGN
NFIC
ZSCAN30
CDC42SE2
KDM4C
BBS9
KCNQ4
MINDY2
PLA2G4D
ING1
PSMA7
KDM7A
SGK1
PIGU
PTPRG
CLK1
CATSPERG
FAM162A
CCDC58
CTSZ
RBMS3
IKZF2
NTAN1
CPLX1
RPS3A
DHRS3
METTL25
CCDC59
FAM110A
ZDHHC17
ANKRD63
KAT6A
CTBP2
MUC20
ACTB
TMEM211
GATD3B
GATD3A
GLI1
NRG2
PDZRN3
HES3
CXXC4
RGPD8
RGPD5
ORMDL3
EIF5
BCO2
KLHL4
DONSON
PEX2
HES7
PDE4D
ZNF485
ZNF341
MDK
ABLIM3
SNX3
ABCC6
ZBTB17
NOL4
ZBTB20
RAPH1
HIC2
TSHZ1
HSPA4L
ZNF827
LAD1
PPP1R13B
FSCN1
CMTR1
RPS8
SYDE2
EPS8
TRIP12
FBXO36
RILPL1
SLC11A2
ZFAND6
TBX19
CLCN3
OTX1
NAA40
NPNT
GOLM2
IGFBP2
RHOBTB1
MTRNR2L2
MSH3
DHFR
MTRNR2L8
HOXA4
SPATC1L
ARID3B
MAMDC2
IER3
FLOT1
ARHGAP10
TMEM107
NDUFS7
ZP4
DPP9
SP2
ERCC1
LBX1
TLE4
DNAJB7
PHOX2B
TTI2
H2AW
HOXA2
TBX3
ASB2
TEPSIN
NDUFAF8
FGF19
ADAM18
DNM2
PCGF1
LBX2
NBAS
TBX2
HOXB3
P4HB
MLEC
FBXO31
HPD
ANKRD28
SP5
SMAD3
SYNPO
HUS1
NPAS4
CAMTA1
ARHGEF28
ZFHX3
DOLPP1
DCTN3
TLE1
RAB5B
KANSL3
FER1L5
ARRDC4
RXRB
ANK2
PGK1
TMEM120B
ARID3C
PHC2
XKR7
HOXC4
ATF6
SLC39A7
CCN1
PRRX1
CBFA2T2
SMPDL3A
KATNB1
PPP6R3
LZTS1
PANK2
TRIB1
FRA10AC1
MYLK4
BAIAP2
SNX16
SQSTM1
TMEM101
ABHD2
BCL3
GPCPD1
NINJ2
SMARCD2
SIRT4
RARG
MFSD10
MTMR4
NR2F1
ABCC10
TOP2A
ID1
KCNAB2
KDM2B
ZNF687
ZNF718
ZNF595
ZNF367
SACM1L
PCGF2
NBPF1
ZFHX4
ARSG
CCNL2
NRL
MUC3A
MRPS31
QPRT
PSPN
ALKBH7
SMG6
HEXIM2
MIDEAS
FURIN
RFX1
ITGAV
ADAP1
POLDIP3
NUBP1
NFKBIA
STIP1
CNTN1
OSBP
EIF2AK3
PSMB3
ZFAND2A
RASSF5
RNF103-CHMP3
RMND5A
DCAF11
ZNF608
LRATD2
PPCDC
KNL1
PCNA
IQSEC3
PSMD6
ATP5F1B
TRIM41
PXYLP1
NR2F6
AHDC1
HNRNPA2B1
CBX3
SLC45A4
HMGCS1
KDM8
CSF3R
RHBDD1
NLK
SMIM20
POLG
SP1
MALRD1
ANKHD1-EIF4EBP3
ANKHD1
RTN4
GPC6
G3BP1
SEPTIN9
B4GAT1
GLRX5
EVA1A
GRSF1
DSCAML1
DLC1
CRLS1
CCL26
MBD6
DDIT3
SLC7A5
RBFOX2
TPCN1
TLE6
FAM107B
RGS12
TRAF7
ARHGAP24
SREBF1
DDA1
FAM72C
CITED2
SHF
TMEM94
SPG7
GADD45A
TRIM46
MEIS2
PLEKHG2
MIDN
DLG2
SOCS3
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
MTF2
FST
PKN2
CCDC43
PRMT5
DAGLB
RGS3
EIF3D
INAVA
SSBP4
LCK
FAM167B
NEK3
STAP2
MYEOV
HPCAL1
SLC6A12
NCDN
KIAA0319L
FGR
ZBTB18
ARID2
ZFP36
PLEC
CYP51A1
ARAP1
CBX5
STX1A
ABCA4
TLN1
CREB3
H3C12
H2BC17
H2AC17
MRPS28
ATP6V1E2
HOXC6
ANKMY1
SERPINE1
RAB37
TCF7L2
GMEB2
FRMD3
UGP2
LTBR
HNMT
HMGB1
NKD1
CNKSR3
ARID5A
ARHGAP4
CAPNS2
BRMS1
TRDMT1
EVI5L
KIAA0319
CPT1A
ARHGEF10L
SMIM11B
SMIM11A
RHOQ
MRPS24
ILF2
RNF166
CEP41
DNAJB3
LAPTM5
CIC
SNCG
MMRN2
FAM72D
CDS2
PRKACA
TDRKH
DIABLO
CMSS1
LNPEP
CACNA1D
CSRNP1
LIMA1
PLAGL1
IFI16
HOXC5
TXNRD1
RAC1
BAHCC1
PHETA1
LFNG
ARID4A
INAFM2
TXNDC11
LUC7L2
ZNF414
PNKD
FAM72A
SEC14L1
EVPL
SYTL3
HTR5A
KCTD7
IKBKB
ZNF76
WTAP
UBE2F
ARL8A
TUBB4B
CXCR4
MT2A
TRABD2B
CERK
AIFM2
COMTD1
IQGAP2
SLC35A3
TCTEX1D4
BTBD19
SORBS2
LRP5L
INSM2
IL6R
USP42
DUSP9
NRM
C12orf73
NRSN2
TUBGCP3
CFL1
GSTP1
RNPEPL1
LAMP1
VOPP1
RNF149
RNF34
CCDC88A
GOT1
ZNF77
CCDC88B
NRXN1
CDK6
USPL1
RASSF2
LRIG1
UACA
NCOA7
BHLHE40
SH2D6
H6PD
CR1L
NEDD9
EPM2A
SH3BP2
KLHDC2
PAX6
TMEM60
PHTF2
HOXB4
RAI14
LMNA