ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584305 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◣ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

NEUROG2
ZNF335
ZP4
RABL2B
MAPKAPK5
PSMD1
RABL2A
NME6
HES1
IPO13
VEZT
FGD6
NEUROG3
RWDD1
CACTIN
HES3
VDAC2
TAOK3
SUDS3
NUP85
ZNF503
POLR3F
DZANK1
HSPA9
IGFBP2
DYNC1LI2
RPL21
NVL
ATP5MG
FAM187A
EFTUD2
CCDC103
VTI1B
PAK1IP1
C6orf52
ARHGAP10
TBCK
AIMP1
DCTN1
FRG2C
BLCAP
NUP205
POLR2E
ACTR10
SRD5A1
NSUN2
REXO1
CDX2
DPH6
SKP1
PMAIP1
C19orf48
NCLN
EXOSC5
BCKDHA
STAM2
PSMG2
CEP76
UPF2
MRPS7
GGA3
SLC35B1
STAM
PES1
TSN
PNO1
DUX4
GOSR2
HADHB
HADHA
SUPV3L1
INSM1
LYRM4
FARS2
FARSB
SEC61B
ANAPC7
RBBP5
CAPRIN1
SKIL
ZNF576
IRGQ
IQCG
RPL35A
ZDHHC1
BABAM2
RBKS
LZTS1
PSMD12
TSNAX
TMED1
PCBP1
MRPS5
SART3
ISCU
ATOH1
GOLGA5
NDUFA4
VARS1
SF3B3
COG4
EIF4ENIF1
ICE1
TTC8
PAF1
MED29
MRPL11
COX7A2L
RPS12
PI4KB
SMC2
PDAP1
BUD31
BNIP3
RPS23
ATP6AP1L
OSGEP
APEX1
GADD45G
MALRD1
RBBP7
USP1
PANK4
HES5
HOXA4
ZRANB2
TM9SF1
LEFTY2
NEUROG1
KDM8
FAM104A
C17orf80
TTYH1
SELENOF
HS2ST1
NBAS
CCDC33
TESC
RPS27A
CLHC1
NFKBIL1
DDX39B
ATP6V1G2
UFM1
XPNPEP3
ST13
PAX6
PRRX1
ADK
AP3M1
UBE2I
ST18
FZD8
RPS29
LRR1
DLL4
CPSF4L
PHOX2B
RABGGTB
PDHB
PROSER1
NHLRC3
HOXB1
CR1L
PTGES2
NEUROD1
HOXB3
HOXB4
BICRA
PNKD
HHIP
APOM
BAG6
RASL10B
HNRNPA2B1
CBX3
PIN4
SULF1
NOXO1
GFER
TAF9
RAD17
AK6
FRG2
TRABD2B
CNTN1
NEDD9
ERRFI1
GTF3A
NUTM2D
PDPN
RYBP
PDE6B
MRTO4
EMC1
STRA6
DDX3X
SLC10A2
SOX12
HOXD3
SEC11C
EPHA5
MYRIP
DLX4
STK36
RNF25
RGS12
TMEM120B
NEK3
KAZALD1
CSRNP1
ARHGAP11A-SCG5
ARHGAP11A
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
BFSP1
LIMCH1
PRUNE2
COMMD1
CCT4
CCDC200
OR6B2
NDUFA10
METTL11B
ZFX
KDM2B
LRATD2
GADD45GIP1
PDHX
APIP
CNTN4
HES7
TPRA1
TTLL6
RPN1
LPIN1
FJX1
GFRA3
CACNA1D
RPH3A
TLE4
OTX1
HNF1A
EIF2S3
TIGD1
EIF4E2
SPACA1
TMEM107
RAI14
KIF26A
ABCB5
ZGPAT
ARFRP1
CNPY2
SYBU
PCBD2
OAZ3
BRWD1
WDR59
UPF3A
LRIG1
CLGN
PDGFA
RPL7
RDH10
REV3L
SUCLG1
HOXA3
SOCS3
CLDN2
CDC73
ANKLE2
LBX1
SOX11
HNRNPD
DCTN3
ARID3C
RARA
TCF7L2
DMBX1
AXDND1
ZMAT4
TNC
GTF3C4
DDX31
REC8
WBP1L
DHRS3
TBC1D8
ADAM18
SALL1
ZNF383
CCN1
CAMTA1
ECM1
BAHCC1
LIN28B
PDE12
HOXA2
DSCAML1
CDX1
DBX1
HOXB8
HOXB7
FGFR4
CATSPERG
MSX2
BAIAP2
XIAP
GORAB
C15orf61
CPN2
ANK2
MAST2
KIF21B
GPR176
VOPP1
CD99L2
SIK1B
SIK1
USP17L20
USP17L22
TSHZ1
PPM1B
SLC39A6
ELP2
TMEM131L
ZADH2
PRDM12
RBPJ
WDR74
STOML2
TMPPE
GLB1
ADAMTS15
PACSIN2
CYP26A1
RADIL
PIPOX
QPRT
ALDH1A2
LIG3
BAZ2B
TPM1
GAD2
KDM6B
ABLIM3
KLF17
ZSWIM6
EBF3
CPLX1
HMGN1
ID2
METTL24
CDC42EP2
ZNF746
SOX21
FAM107A
LRRC15
MYLK4
SLC22A2
LZTFL1
OR8J1
DHX32
ONECUT2
TBX3
CEMP1
ERCC1
HOXA5
DST
PKNOX2
CHN2
CPVL
LINGO1
ALKBH6
SYNE4
RPS10-NUDT3
RPS10
RPS24
POLR3A
TLE2
EIF4H
ALKBH5
SLC7A5
SOX6
FABP5
FGF19
MTCH2
RNF138
FBLN1
JAKMIP1
LHX2
MSX1
ZFHX4
ADGRL2
ABHD11
ZCWPW1
MEPCE
SMC6
GEN1
TRAP1
ANTKMT
METRN
SALL4
EIF2S1
ATP6V1D
TLE6
KLF6
RUNX1T1
TLE1
ID3
NEBL
PHC2
YAP1
SPOCK2
KMT2A
TBL1XR1
HOXA6
ITPRIP
CYP51A1
SPCS1
GLT8D1
H3-3A
ZNF775
NUP210
KMT2B
C12orf73
DAAM1
TPST2
GREB1
MEX3B
RPRM
KRT20
PAX3
KLHL15
CNKSR3
ITIH4
MUSTN1
PIGR
MEIS3
STMN1
NR6A1
TLE3
SEMA6D
SRGAP3
HEY1
BBS9
HOXC4
SNCG
MMRN2
KEAP1
EIF4E3
DAPL1
HOXD1
STK38
TFDP2
PAX4
CA4
HOXC5
CUEDC1
LRRC10B
SERPING1
TPCN1
FGF2
PCDH11Y
TMEM70
ELOC
ALOX5AP
TUBB3
TANC1
USP17L11
USP17L21
USP17L12
USP17L18
ADM
HOXB9
CER1
CS
MEF2C
TAGLN3
MEIS2
IFI16
FBXO10
TCF4
TCF20
CEP97
PLAGL1
TMEM14A
MEOX1
IL37
RARB
LIN28A
NKIRAS1
NR1D2
ASXL3
ENO1
MSI2
ZFHX3
HOXA9
HOXA7
MARCHF7
LAPTM4A
SP5
NUTM2G
PCBP4
SRSF11
LRRC40
BNIP2
USH1C
ME2
PANK2
TYRO3
PCDH18
RGS16
LDLRAD3
PBX3
SEMA4B
C1orf141
IP6K3
ERI1
ELMO1
PLEKHA6
LYPD6B
CSTF2T
FOXD1
CDK14
N4BP3
BTF3
HRK
M1AP
DUSP6
ABAT
NELFA
GPR157
REV1
MTRNR2L1
MTRNR2L2
MSH3
DHFR
MTRNR2L8
SOAT2
IGFBP6
SPATC1L
ARID3B
MAMDC2
NFE2
IER3
FLOT1
C16orf91
NDUFS7
SH2B1
DPP9
SP2
KAT6B
SEC22B
SPATA25
CTSA
TRIP10
GPR108
MRPL38
DNAJB7
NEURL2
TTI2
H2AW
HOXA1
CDCA7L
ASB2
TEPSIN
NDUFAF8
DNM2
PCGF1
LBX2
FOXP1
COL23A1
TBX2
P4HB
MLEC
FBXO31
HPD
MINDY2
ANKRD28
SMAD3
SYNPO
HUS1
NPAS4
TNFRSF19
ARHGEF28
MRPL34
PDE4D
DOLPP1
STX18
RAB5B
KANSL3
FER1L5
ARRDC4
RXRB
PGK1
DONSON
XKR7
HSPA1B
ATF6
SLC39A7
CBFA2T2
SMPDL3A
OTUD7B
KATNB1
PPP6R3
TRIB1
FRA10AC1
CCDC174
SNX16
SQSTM1
TMEM101
CLCN3
ABHD2
BCL3
POP5
GPCPD1
PDZRN3
NINJ2
SMARCD2
GATA4
SIRT4
RARG
MFSD10
MTMR4
NR2F1
ABCC10
TOP2A
ID1
KCNAB2
ZNF687
ZNF718
ZNF595
ZNF367
SACM1L
PCGF2
NBPF1
ARSG
CCNL2
NRL
MUC3A
FOXP2
MRPS31
PSPN
ALKBH7
SMG6
CNOT2
DYNLT1
HEXIM2
MIDEAS
FURIN
RFX1
ITGAV
ADAP1
POLDIP3
NUBP1
NFKBIA
PKDCC
STIP1
OSBP
EIF2AK3
PSMB3
ZFAND2A
RASSF5
RNF103-CHMP3
RMND5A
DCAF11
ZNF608
PPCDC
KNL1
PCNA
IQSEC3
PSMD6
SOD2
ATP5F1B
TRIM41
RNF207
PXYLP1
NR2F6
AHDC1
MDM2
ABHD8
SLC45A4
KMT5A
LPCAT3
HMGCS1
AGO1
JUP
CSF3R
RHBDD1
NLK
SMIM20
POLG
SP1
ANKHD1-EIF4EBP3
ANKHD1
RTN4
FTL
PRDM10
NCOA2
GPC6
RAB11B
G3BP1
SEPTIN9
B4GAT1
GLRX5
MACROH2A1
EVA1A
GRSF1
DLC1
CRLS1
CCL26
MBD6
DDIT3
RBFOX2
FAM107B
TRAF7
ARHGAP24
SREBF1
DDA1
FAM72C
CITED2
SHF
TMEM94
SPG7
GADD45A
TRIM46
PLEKHG2
MIDN
DLG2
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
MTF2
FST
PKN2
CCDC43
PRMT5
KDM3A
DAGLB
RGS3
EIF3D
INAVA
ACYP1
SSBP4
LCK
FAM167B
STAP2
MYEOV
HPCAL1
SLC6A12
NCDN
KIAA0319L
FGR
ZBTB18
ARID2
ZFP36
SLC30A4
PLEC
ARAP1
CBX5
STX1A
ABCA4
TLN1
CREB3
H3C12
H2BC17
H2AC17
COX5A
SH3YL1
ACP1
MRPS28
ATP6V1E2
HOXC6
ANKMY1
SERPINE1
RAB37
GMEB2
FRMD3
UGP2
LTBR
HNMT
HMGB1
NKD1
ARID5A
ARHGAP4
CAPNS2
BRMS1
TRDMT1
EVI5L
KIAA0319
CPT1A
ARHGEF10L
SMIM11B
SMIM11A
RHOQ
MRPS24
ILF2
RNF166
GATD3B
GATD3A
CEP41
DNAJB3
LAPTM5
CIC
FAM72D
CDS2
PRKACA
TDRKH
MBD2
SYNJ2
DIABLO
CMSS1
LNPEP
LIMA1
TXNRD1
RAC1
PHETA1
LFNG
ARID4A
INAFM2
TXNDC11
LUC7L2
ZNF414
FAM72A
SEC14L1
EVPL
SYTL3
HTR5A
KCTD7
IKBKB
ZNF76
WTAP
UBE2F
ARL8A
ROGDI
TUBB4B
CXCR4
MT2A
CERK
ANKRD1
AIFM2
COMTD1
IQGAP2
SLC35A3
TCTEX1D4
BTBD19
SORBS2
LRP5L
INSM2
IL6R
USP42
DUSP9
NRM
NRSN2
TUBGCP3
CFL1
GSTP1
RNPEPL1
LAMP1
RNF149
NR2C1
RNF34
CCDC88A
GOT1
ZNF77
CCDC88B
NRXN1
CDK6
USPL1
RASSF2
UACA
NCOA7
BHLHE40
SH2D6
H6PD
EPM2A
SH3BP2
KLHDC2
TMEM60
PHTF2
ING1
LMNA
PIKFYVE
IRF9
PIGV
USP3
CBX4
NRCAM
ZDHHC4
CHD8
EIF1B
ZNF3
KRI1
CDKN2D
NCBP2AS2
NCBP2
RBM15
CCL16
ZNF827
LRCH4
FBXO24
CRKL
NHLRC1
OPRM1
SEMA5B
TRAF4
SLC25A19
SCAP
TRIM7
TES
ORMDL3
ERI3
GPAA1
EXOSC4
PC
YTHDF2
NKX1-1
MYADM
ANKS4B
STX16
TSPAN4
POLR2L
TF
MARCHF3
CLK1
INHBE
RXRA
CDC42EP3
GFOD1
TCHP
ICAM1
E4F1
SRSF2
MFSD11
POLR3E
NFE2L1
PARK7
NANP
CXXC5
CEBPE
NEO1
TACC1
KPNA4
HSP90B1
CYB5R4
POLR2J3
PCTP
UNC13D
PXMP4
FAAP24
CEP89
ANP32E
HECTD4
ATP2B2
MPND
ATG16L1
ZC2HC1C
TUBB
TTC30B
GPT2
C14orf93
UBE2C
RNF144A
CCDC114
SH3BP4
SRCAP
LOC730183
KCNH7
MVD
ACVR1
DGKZ
TOMM40
MPC1
IRS1
PAQR8
GBA
GPR35
UGT1A1
L1CAM
LASP1
DDX1
LMO4
GGT1
TRAF2
GPATCH8
SNX1
CIAO2A
HNRNPC
PKM
ATP23
ATP5MC1
UBXN10