ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584308 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◣ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
PSMD1
NUP205
RABL2A
POLR3F
DZANK1
NME6
IPO13
RABL2B
NVL
CACTIN
RWDD1
TAOK3
SUDS3
RPL21
FARSB
C19orf48
TBCK
AIMP1
NUP85
POLR2E
HSPA9
PAK1IP1
C6orf52
VDAC2
MAPKAPK5
PES1
ATP5MG
FAM187A
EFTUD2
CCDC103
NCLN
ANAPC7
SEC61B
MRPS7
GGA3
PSMG2
CEP76
HADHB
HADHA
GOSR2
ZRANB2
DCTN1
EXOSC5
BCKDHA
VTI1B
ZNF576
IRGQ
BLCAP
PNO1
UPF2
IQCG
RPL35A
STAM
LYRM4
FARS2
DYNC1LI2
XPNPEP3
ST13
STAM2
PI4KB
SART3
ISCU
NEUROG2
SF3B3
COG4
PCBP1
PSMD12
TSN
TMED1
SELENOF
HS2ST1
RPS27A
CLHC1
FZD8
CAPRIN1
NDUFA4
CDX2
ACTR10
UFM1
NBAS
ADK
AP3M1
SRD5A1
NSUN2
RPS12
LBX1
SMPDL3A
VARS1
ZNF503
RBBP5
RPS23
ATP6AP1L
SMC2
SUPV3L1
MRPL11
TSNAX
SLC35B1
PRDM12
ERRFI1
ADAM18
TPM1
EVA1A
ANK2
DUX4
REXO1
SKP1
TTC8
COX7A2L
PDAP1
BUD31
FGF19
RABGGTB
OSGEP
APEX1
APOM
BAG6
PROSER1
NHLRC3
C16orf91
FOXP2
DCTN3
ARID3C
PIN4
ICE1
MYO10
CCN1
LRGUK
ARHGAP11A-SCG5
ARHGAP11A
FAM104A
C17orf80
MRPS5
GOLGA5
MYLK4
DPH6
LRIG3
TMEM107
PAF1
MED29
TMEM14A
EIF4ENIF1
USP1
BABAM2
RBKS
SYNPO
SYBU
DMRT3
TMEM120B
HES3
IGFBP2
PDHB
SEC22B
MALRD1
SOX21
PTGES2
FRG2C
DBX1
DAPL1
RGS12
MOBP
ABLIM3
NEUROG3
C12orf73
FOXD3
PAX8
RPL7
RDH10
BICRA
PDZRN3
TLE4
ZFHX4
MXI1
SOAT2
IGFBP6
NR2F1
RGL1
SEC11C
VEZT
FGD6
ABCG2
KCNK16
PHC2
ARHGAP10
UBE2I
LRATD2
NFKBIL1
DDX39B
ATP6V1G2
KRT20
MEIS2
ARHGAP24
PHOX2B
SPACA1
SUCLG1
HOXA4
TLE1
KDM8
HES1
EIF2S3
LRIG1
GPR176
RPS29
LRR1
PCDH11Y
COMMD1
CCT4
ZNF383
SEMA6D
CEP41
STK36
RNF25
CCDC33
LMO4
MRTO4
EMC1
ARHGEF28
OR6B2
NDUFA10
REV3L
CCDC88C
NUTM2D
MNX1
CACNA1D
TAF9
RAD17
AK6
TM9SF1
ZNF608
VCAN
HHIP
RAI14
PRRX1
NEK3
B3GALT5
KDM2B
SULF1
GADD45GIP1
CHMP4C
ATOH1
METTL24
TLE2
ZFX
TEX2
STXBP5L
FHL1
WT1
CLEC18C
BFSP1
PKDCC
METTL11B
NRG2
ELMOD2
BNIP3
RPS24
POLR3A
BAIAP2
SALL1
TP53INP1
TPO
TLE3
CNPY2
RBP3
ALKBH5
FGFR2
PJA2
HOXA3
DTX4
CNTN4
PLEKHA5
ASXL3
TBX3
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
SLC7A5
TTR
MTMR7
TYRO3
LMO1
PDE6B
TNFRSF19
CETN1
CR1L
MAB21L2
TESC
TPST2
SLA
OCLN
DMBX1
HNF1A
NPAS1
GORAB
MSX1
SECISBP2L
GFRA1
TANGO6
CLDN2
NEUROG1
PDE1B
NXPH2
TRABD2B
PDE12
RUNX1T1
PPP1R12B
DHX32
OAZ3
CYP26A1
FRS2
PIK3C2A
NEUROD1
SLAMF8
CCDC198
SLC14A1
HOXA2
VOPP1
CATSPERG
GTF3C4
DDX31
HOXB3
DLX4
HOXB4
CD69
FRG2
PPFIBP2
RPN1
TRMT9B
GCSAM
CLGN
NCOR2
SLC10A2
CS
TBC1D8
AGMO
RARB
TCF7L2
ZNF367
CXXC4
GALNT14
PANK4
HES5
HOXD3
MEF2C
NOTCH1
CNN3
PPBP
TTI2
ZCCHC13
BAZ2B
SOX6
BBS9
ALDH1A2
CPEB2
BHLHE22
SALL4
ATOH8
SNCG
MMRN2
CTXN3
SLC39A6
ELP2
CDH16
HOXB1
SCHIP1
SOST
ST8SIA3
ZFHX3
ECM1
HOXC4
PTGR1
CDC73
ADGRL2
CER1
RBBP7
CAMTA1
KIF21B
ID1
PRDM13
ADM
SYTL2
RARA
ZDHHC1
RHOB
ZGPAT
ARFRP1
PAM
CHD8
GATA3
TCF4
THRA
PARS2
MRPL38
GAD2
JAKMIP1
EPB41L5
OTUD6A
ST18
ABCA4
PRRC2C
OR5A2
TMEFF2
CLEC18B
AGPAT4
PCBD2
CBY2
TMCC3
DUSP6
PRKCA
LIMK2
ZBTB2
SLC35E3
NXPH4
WRAP53
TP53
NUP93
TMEM132C
CCDC169-SOHLH2
CCDC169
ID2
RBM20
P2RY14
CCDC200
KMT2A
LIPG
ALG14
LIN28A
CITED2
GJA1
PDPN
WDR59
LMO3
TNRC6B
TRIM2
SASH1
KCNIP4
PDHX
APIP
ZNF746
PHACTR2
ALOX5AP
AJUBA
SSBP3
OAZ2
ARSF
PIMREG
FLNB
CNTN1
CFAP69
NEUROD4
TFDP2
MXRA7
DMRTA1
INSM1
LHX2
AXDND1
PMFBP1
DLGAP1
NDUFB3
FAM126B
LRRC10B
FOXP1
ARMC12
PCDH18
TWIST1
HOXA1
DAAM1
KCNN2
TAS2R8
TAS2R7
FOXB1
FAM107A
SPON1
ANKS1B
ACBD5
UTRN
TPRA1
REC8
GPC6
LIN28B
FERD3L
SOCS3
METTL25
CCDC59
IPO11
BMP5
FAM120B
DLL1
LZTS1
FHDC1
ERCC1
IGFN1
FMO3
CDC42EP2
RPS10-NUDT3
RPS10
FABP5
LAPTM4A
SH2B1
VANGL2
POU2F1
PAX3
GALNTL5
ARID5B
CDK14
USP17L20
USP17L22
USP17L11
USP17L21
USP17L12
JDP2
USP17L18
SHOX2
RSRC1
SVOPL
MTRNR2L1
WDR74
MTRNR2L2
MSH3
DHFR
SKIL
MTRNR2L8
SPATC1L
ARID3B
MAMDC2
NFE2
PMAIP1
IER3
FLOT1
NDUFS7
ZP4
DHRS3
DPP9
SP2
KAT6B
LEFTY2
SPATA25
CTSA
TRIP10
GPR108
DNAJB7
NEURL2
SPCS1
GLT8D1
H2AW
CDCA7L
ASB2
TEPSIN
NDUFAF8
ANKLE2
DNM2
PCGF1
LBX2
COL23A1
TBX2
P4HB
MLEC
PRUNE2
FBXO31
HPD
MINDY2
TMEM70
ELOC
DLL4
ANKRD28
SP5
SMAD3
LPIN1
HUS1
NPAS4
ID3
MRPL34
PDE4D
DOLPP1
STX18
RAB5B
KANSL3
FER1L5
ARRDC4
RXRB
PGK1
DONSON
UPF3A
XKR7
HSPA1B
ATF6
SLC39A7
NELFA
CBFA2T2
OTUD7B
KATNB1
RBPJ
PPP6R3
KDM6B
PANK2
TRIB1
FRA10AC1
CCDC174
SNX16
SQSTM1
TMEM101
CLCN3
ABHD2
BCL3
POP5
GPCPD1
NINJ2
SMARCD2
GATA4
SIRT4
RARG
MFSD10
MTMR4
ABCC10
TOP2A
KCNAB2
ZNF687
ZNF718
ZNF595
SACM1L
PCGF2
NBPF1
ARSG
CCNL2
NRL
MUC3A
SRSF11
MRPS31
QPRT
PSPN
ALKBH7
SMG6
CNOT2
DYNLT1
HEXIM2
MIDEAS
FURIN
RFX1
LRRC40
ITGAV
ADAP1
POLDIP3
NUBP1
NFKBIA
STIP1
OSBP
EIF2AK3
PSMB3
ZFAND2A
RASSF5
RNF103-CHMP3
RMND5A
DCAF11
PPCDC
KNL1
PCNA
IQSEC3
GADD45G
PSMD6
SOD2
ATP5F1B
TRIM41
RNF207
PXYLP1
NR2F6
AHDC1
HNRNPA2B1
CBX3
KAZALD1
MDM2
ABHD8
SLC45A4
KMT5A
LPCAT3
HMGCS1
AGO1
JUP
CSF3R
RHBDD1
NLK
SMIM20
POLG
SP1
ANKHD1-EIF4EBP3
ANKHD1
RTN4
FTL
PRDM10
NCOA2
RAB11B
G3BP1
SEPTIN9
B4GAT1
LIG3
MYRIP
GLRX5
MACROH2A1
GRSF1
DSCAML1
DLC1
CRLS1
CCL26
MBD6
DDIT3
RBFOX2
TPCN1
TLE6
FAM107B
TRAF7
HNRNPD
SREBF1
DDA1
FAM72C
SHF
TMEM94
SPG7
GADD45A
TRIM46
PLEKHG2
MIDN
DLG2
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
MTF2
FST
PKN2
CCDC43
PRMT5
KDM3A
ANTKMT
DAGLB
RGS3
EIF3D
INAVA
ACYP1
SSBP4
LCK
FAM167B
STAP2
MYEOV
HPCAL1
SLC6A12
NCDN
KIAA0319L
FGR
ZBTB18
ARID2
ZFP36
SLC30A4
PLEC
CYP51A1
ARAP1
CBX5
STX1A
TLN1
CREB3
H3C12
H2BC17
H2AC17
COX5A
SH3YL1
ACP1
MRPS28
ATP6V1E2
HOXC6
ANKMY1
SERPINE1
RAB37
GMEB2
FRMD3
UGP2
LTBR
HNMT
EIF4H
HMGB1
NKD1
CNKSR3
ARID5A
ARHGAP4
CAPNS2
BRMS1
TRDMT1
EVI5L
KIAA0319
CPT1A
ARHGEF10L
SMIM11B
SMIM11A
RHOQ
MRPS24
ILF2
RNF166
GATD3B
GATD3A
DNAJB3
LAPTM5
CIC
FAM72D
CDS2
PRKACA
TDRKH
MBD2
SYNJ2
DIABLO
CMSS1
LNPEP
CSRNP1
LIMA1
PLAGL1
IFI16
HOXC5
TXNRD1
RAC1
BAHCC1
PHETA1
LFNG
ARID4A
INAFM2
TXNDC11
GTF3A
LUC7L2
ZNF414
PNKD
FAM72A
SEC14L1
EVPL
SYTL3
HTR5A
KCTD7
IKBKB
ZNF76
WTAP
UBE2F
ARL8A
ROGDI
MSX2
TUBB4B
CXCR4
MT2A
CERK
ANKRD1
AIFM2
COMTD1
IQGAP2
SLC35A3
TCTEX1D4
BTBD19
SORBS2
TIGD1
EIF4E2
LRP5L
INSM2
IL6R
USP42
DUSP9
NRM
NRSN2
TUBGCP3
CFL1
GSTP1
RNPEPL1
LAMP1
RNF149
NR2C1
RNF34
CCDC88A
GOT1
ZNF77
CCDC88B
NRXN1
CDK6
USPL1
RASSF2
UACA
NCOA7
BHLHE40
SH2D6
H6PD
NEDD9
EPM2A
SH3BP2
KLHDC2
PAX6
TMEM60
PHTF2
ING1
LMNA
PIKFYVE
IRF9
PIGV
USP3
CBX4
NRCAM
ZDHHC4
EIF1B
CPSF4L
ZNF3
KRI1
CDKN2D
NCBP2AS2
NCBP2
RBM15
KLF6
CCL16
ZNF827
LRCH4
FBXO24
CRKL
NHLRC1
OPRM1
SEMA5B
TRAF4
SLC25A19
SCAP
TRIM7
TES
ORMDL3
ERI3
GPAA1
EXOSC4
PC
YTHDF2
NKX1-1
MYADM
ANKS4B
STX16
NKIRAS1
TSPAN4
POLR2L
METRN
TF
MARCHF3
CLK1
INHBE
RXRA
CDC42EP3
GFOD1
TCHP
ICAM1
E4F1
SRSF2
MFSD11
POLR3E
ENO1
NFE2L1
PARK7
NANP
CXXC5
CEBPE
NEO1
TACC1
KPNA4
HSP90B1
CYB5R4
POLR2J3
PCTP
UNC13D
PXMP4
FAAP24
CEP89
ANP32E
HECTD4
ATP2B2
MPND
ATG16L1
ZC2HC1C
TUBB
TTC30B
GPT2
C14orf93
UBE2C
RNF144A
CCDC114
SH3BP4
SRCAP
LOC730183
KCNH7
MVD
ACVR1
DGKZ
TOMM40
MPC1
IRS1
PACSIN2
PAQR8
GBA
BRWD1
GPR35
UGT1A1
L1CAM
LASP1
DDX1
ZCWPW1
MEPCE
GGT1