ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX6039039 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◣ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

RABL2B
ZNF335
RABL2A
PSMD1
DYNC1LI2
PSMG2
CEP76
CACTIN
NME6
IPO13
POLR3F
DZANK1
MAPKAPK5
TAOK3
SUDS3
FAM187A
EFTUD2
CCDC103
NVL
NEUROG3
DPH6
VTI1B
NUP85
VDAC2
DCTN1
RPL21
C19orf48
NUP205
TBCK
AIMP1
HSPA9
NCLN
STAM
GOSR2
MRPS7
GGA3
TSNAX
RWDD1
POLR2E
SKP1
HADHB
HADHA
STAM2
CDX2
TTC8
SEC61B
PNO1
ZNF576
IRGQ
SLC35B1
ATP5MG
RPS23
ATP6AP1L
MRPS5
SRD5A1
NSUN2
ZNF503
PAK1IP1
C6orf52
SMC2
CDCA7L
BLCAP
UPF2
TSN
BABAM2
RBKS
VARS1
FARSB
CAPRIN1
PDAP1
BUD31
DLX4
NEUROD1
EIF4ENIF1
REXO1
SUPV3L1
PES1
COX7A2L
ACTR10
FRG2C
LYRM4
FARS2
EXOSC5
BCKDHA
TMED1
SELENOF
HS2ST1
GOLGA5
ZRANB2
FGFRL1
IQCG
RPL35A
FAM104A
C17orf80
USP1
TM9SF1
FZD8
PI4KB
PSMD12
RBBP5
MRS2
ICE1
ADK
AP3M1
NDUFA4
WDR6
RPS27A
CLHC1
PTGES2
INSM1
PAF1
MED29
COMMD1
CCT4
DLL4
VEZT
FGD6
NEUROG1
SART3
ISCU
MRPL11
RPS12
PDE6B
UFM1
RABGGTB
OSGEP
APEX1
XPNPEP3
ST13
DNAJB7
PCBP1
ANAPC7
ATOH1
DUX4
APOM
BAG6
PROSER1
NHLRC3
RAB11B
DNAJB8
DUSP6
NFKBIL1
DDX39B
ATP6V1G2
SF3B3
COG4
ST18
MYRIP
DAPL1
RBL2
SHB
HESX1
POP5
GALNT10
PIN4
FOXC1
HES1
FRAT2
STK36
RNF25
ID3
EIF2S3
TAF9
RAD17
AK6
RPS29
LRR1
FRG2
LEFTY2
LPIN1
ANKRD1
SEC11C
DENND1A
PMAIP1
PNPLA1
GBX1
ARHGAP11A-SCG5
ARHGAP11A
LIG3
GADD45GIP1
KLF17
SUCLG1
EHF
BNIP3
OR6B2
NDUFA10
CALM2
NXPH4
ZNF664-RFLNA
ZNF664
CCDC92
TPRA1
UBE2I
GADD45G
SKIL
CERKL
PAX8
RPL7
RDH10
SEC22B
TLE2
PCBD2
RBPJ
ZNF383
CCDC200
GATA4
NCOR2
MRTO4
EMC1
PDHX
APIP
TMEM70
ELOC
MSX2
ACOT2
MBNL2
NEUROG2
PHLDB2
AMOT
GORAB
HSPA1B
TIGD1
EIF4E2
MAL
GTF3C4
DDX31
DTNB
COCH
NKIRAS1
NR1D2
UPF3A
KDM6B
GJA10
ALKBH5
BMP7
HCRTR1
TMPPE
GLB1
MLH1
EPM2AIP1
RAB17
TVP23C
OTX2
ARHGEF38
CNPY2
HES3
SYBU
MYSM1
SLC22A24
RPN1
GSR
ZGPAT
ARFRP1
CDC73
RAD54L2
ZNF649
OAZ3
LYPD6B
AXDND1
PRUNE2
DMBX1
USP44
MBD2
APLN
ZNF592
HOXB1
BANP
C15orf61
HEY2
CHN2
CPVL
CCDC85A
TRIP10
GPR108
PKIB
LDLRAD4
SPCS1
GLT8D1
BICRA
ANKLE2
DSCAML1
SCAMP4
ADAT3
RAN
DUSP4
SRSF11
LRRC40
PLA1A
MACROH2A1
CABIN1
RPP25
STK38
USP17L20
USP17L11
USP17L21
USP17L12
USP17L18
FZD10
MEOX1
ZNF397
TFAP2A
INKA2
CNTN4
KIF21B
OPRL1
LKAAEAR1
PTCH1
USP17L22
NOG
HNRNPA2B1
CBX3
CLEC10A
GATA3
ELF3
BAMBI
RSPO4
MRPL38
ATP6V0A4
LYPD1
FOXP2
KCNK2
ZNF850
DDX3X
BCOR
PDE12
ZCWPW1
MEPCE
SNX1
CIAO2A
MTRNR2L1
TBC1D8
RPH3A
PCDHAC1
RGSL1
SLC40A1
CFAP126
HAND1
JAKMIP1
OLIG3
HNRNPD
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
RYBP
DIRAS1
ARHGAP28
CLDN15
LRMDA
HOXA3
GRHL2
METTL11B
PLEKHA5
NFE2
HIC2
ANXA9
LIN28A
NCOA2
NTAN1
RBBP8NL
NDUFV2
TYRO3
STRADA
MAST2
C6orf163
SOX14
HOXA1
TAS2R8
TAS2R7
TCHP
IGF2
PAH
USP17L15
SLC12A3
ASCL1
DLX6
RARA
ZFAND3
SLC16A12
CDS1
NFIC
MID1
RUNX1T1
SNX16
RNF32
CYP26A1
TMEM41B
CD101
PDCD2
CHPT1
ZNF746
VENTX
BTBD3
H3-3A
TMEM275
DCLRE1C
ACOT1
SGK1
TBL1XR1
YAP1
TVP23B
PXMP2
POLE
BTF3
KAZALD1
KLF6
C16orf91
NAGLU
LCOR
RIMS2
METTL24
CEMP1
ZNF436
ZNF853
TRAP1
OSCAR
NDUFA3
RBBP7
ZNF90
FOXF1
GALNT8
ZMIZ2
PCLO
ZFP37
KAT6B
FDFT1
CCDC33
ARL14EP
LIPK
PRDM10
PRDM12
TEX46
KDM1A
EIF4H
SLC25A6
LEF1
ZNF891
ZNF10
HOXB9
CXXC4
WDR74
MTCH2
EN1
OTX1
RIMS1
CD99L2
ZNF81
TMEM185A
PTPRE
TENT4B
RPS10-NUDT3
RPS10
SPIN1
KCNJ4
FAM53B
PTPRG
CHD8
SP7
CLDN9
HINT1
CCDC169-SOHLH2
CCDC169
NAV2
STRA6
LIX1
CENPBD1
PRSS8
CBX4
COL11A2
FANK1
STON1-GTF2A1L
FAM89A
WNT3
OTP
CCDC88C
PODXL
APBB1IP
FAM24B
PAX7
FAM120B
DLL1
AGO1
TRIM45
GOLM1
SUCLG2
MACROD2
ORMDL3
ERI1
FTL
COMT
TXNRD2
ALDH3A2
PLAGL1
GYG2
GNG4
CNOT2
BCAT2
UPK2
NELFA
PRSS47
SHBG
FXR2
GC
PKNOX1
SEMA3C
DUSP12
CDX1
RASL10B
YTHDF2
KIF26A
BTG1
EVC2
EVC
DHRS3
ZNF552
ZNF296
GEMIN7
SH2B1
NFAM1
ZFP64
SYDE2
FREM1
ZNF292
SERTAD2
REV1
ANKRD28
PARP16
HOXB3
RARB
MTRNR2L2
MSH3
DHFR
MTRNR2L8
HOXA4
SOAT2
IGFBP6
SPATC1L
ARID3B
MAMDC2
ID2
IER3
FLOT1
ARHGAP10
TMEM107
NDUFS7
ZP4
DPP9
SP2
ERCC1
SPATA25
CTSA
BBS9
IGFBP2
LBX1
TPM1
TLE4
TLE3
PHOX2B
NEURL2
TTI2
H2AW
HOXA2
TBX3
ASB2
TEPSIN
NDUFAF8
ERRFI1
FGF19
ADAM18
DNM2
PCGF1
LBX2
NBAS
FOXP1
COL23A1
TBX2
P4HB
MLEC
FBXO31
HPD
MINDY2
CS
SP5
PDHB
SMAD3
SYNPO
CLGN
HUS1
NPAS4
CAMTA1
TNFRSF19
ARHGEF28
MRPL34
PDE4D
ZFHX3
DOLPP1
DCTN3
TLE1
STX18
RAB5B
KANSL3
FER1L5
ARRDC4
RXRB
ANK2
PGK1
TMEM120B
ARID3C
DONSON
PHC2
XKR7
HOXC4
ATF6
SLC39A7
MSX1
CCN1
PRRX1
CBFA2T2
SMPDL3A
OTUD7B
KATNB1
PPP6R3
RPS24
POLR3A
LZTS1
PANK2
TRIB1
FRA10AC1
CCDC174
MYLK4
BAIAP2
SQSTM1
TMEM101
CLCN3
ABHD2
BCL3
GPCPD1
PDZRN3
NINJ2
SMARCD2
SIRT4
RARG
MFSD10
MTMR4
NR2F1
ABCC10
TOP2A
ID1
KCNAB2
KDM2B
ZNF687
ZNF718
ZNF595
ZNF367
SACM1L
PCGF2
NBPF1
ZFHX4
ARSG
CCNL2
NRL
MUC3A
MRPS31
QPRT
PSPN
ALKBH7
SMG6
DYNLT1
HEXIM2
MIDEAS
FURIN
RFX1
ITGAV
ADAP1
POLDIP3
NUBP1
NFKBIA
PKDCC
STIP1
CNTN1
OSBP
EIF2AK3
PSMB3
ZFAND2A
RASSF5
RNF103-CHMP3
RMND5A
DCAF11
ZNF608
LRATD2
PPCDC
KNL1
PCNA
IQSEC3
PSMD6
SOD2
ATP5F1B
TRIM41
RNF207
PXYLP1
NR2F6
AHDC1
MDM2
ABHD8
SLC45A4
KMT5A
LPCAT3
HMGCS1
KDM8
JUP
CSF3R
RHBDD1
NLK
SMIM20
POLG
SP1
MALRD1
ANKHD1-EIF4EBP3
ANKHD1
RTN4
GPC6
G3BP1
SEPTIN9
B4GAT1
GLRX5
EVA1A
GRSF1
DLC1
CRLS1
CCL26
MBD6
DDIT3
SLC7A5
RBFOX2
TPCN1
TLE6
FAM107B
RGS12
TRAF7
ARHGAP24
SREBF1
DDA1
FAM72C
CITED2
SHF
TMEM94
SPG7
GADD45A
TRIM46
MEIS2
PLEKHG2
MIDN
DLG2
SOCS3
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
MTF2
FST
PKN2
CCDC43
PRMT5
KDM3A
ANTKMT
DAGLB
RGS3
BFSP1
EIF3D
INAVA
ACYP1
SSBP4
LCK
FAM167B
NEK3
STAP2
MYEOV
HPCAL1
SLC6A12
NCDN
KIAA0319L
FGR
ZBTB18
ARID2
ZFP36
SLC30A4
PLEC
CYP51A1
ARAP1
CBX5
STX1A
ABCA4
TLN1
CREB3
H3C12
H2BC17
H2AC17
COX5A
SH3YL1
ACP1
MRPS28
ATP6V1E2
HOXC6
ANKMY1
SERPINE1
RAB37
TCF7L2
GMEB2
FRMD3
UGP2
LTBR
HNMT
ADM
HMGB1
NKD1
CNKSR3
ARID5A
ARHGAP4
KMT2A
CAPNS2
BRMS1
TRDMT1
EVI5L
KIAA0319
CPT1A
ARHGEF10L
SMIM11B
SMIM11A
RHOQ
MRPS24
ILF2
RNF166
GATD3B
GATD3A
CEP41
DNAJB3
LAPTM5
CIC
SNCG
MMRN2
FAM72D
CDS2
PRKACA
TDRKH
SYNJ2
DIABLO
CMSS1
LNPEP
CACNA1D
CSRNP1
LIMA1
IFI16
HOXC5
TXNRD1
RAC1
BAHCC1
PHETA1
LFNG
ARID4A
INAFM2
TXNDC11
GTF3A
LUC7L2
ZNF414
PNKD
FAM72A
SEC14L1
EVPL
SYTL3
HTR5A
KCTD7
IKBKB
ZNF76
WTAP
UBE2F
ARL8A
ROGDI
TUBB4B
CXCR4
MT2A
TRABD2B
CERK
AIFM2
COMTD1
IQGAP2
SLC35A3
TCTEX1D4
BTBD19
SORBS2
LRP5L
INSM2
IL6R
USP42
DUSP9
NRM
C12orf73
NRSN2
TUBGCP3
CFL1
GSTP1
RNPEPL1
LAMP1
VOPP1
RNF149
NR2C1
RNF34
CCDC88A
GOT1
ZNF77
CCDC88B
NRXN1
CDK6
USPL1
RASSF2
LRIG1
UACA
NCOA7
BHLHE40
SH2D6
H6PD
CR1L
NEDD9
EPM2A
SH3BP2
KLHDC2
PAX6
TMEM60
PHTF2
HOXB4
ING1
RAI14
LMNA
PIKFYVE
IRF9
PIGV
USP3
NRCAM
ZDHHC4
EIF1B
CPSF4L
ZNF3
KRI1
CDKN2D
NCBP2AS2
NCBP2
RBM15
CCL16
ZNF827
LRCH4
FBXO24
CRKL
NHLRC1
OPRM1
SEMA5B
TRAF4
SLC25A19
SCAP
TRIM7
TES
ERI3
GPAA1
EXOSC4
PC
NKX1-1
MYADM
ANKS4B
STX16
TSPAN4
POLR2L
METRN
TF
MARCHF3
CLK1
INHBE
RXRA
CDC42EP3
GFOD1
ICAM1
E4F1
SRSF2
MFSD11
POLR3E
ENO1
NFE2L1
PARK7
NANP
CXXC5
CEBPE
NEO1
TACC1
KPNA4
HSP90B1
CYB5R4
POLR2J3
PCTP
UNC13D
PXMP4