ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584304 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◣ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
RABL2B
NEUROG2
RABL2A
NUP205
ZP4
POLR3F
DZANK1
PSMD1
NME6
NEUROG3
MAPKAPK5
TBCK
AIMP1
NVL
HSPA9
POLR2E
NUP85
ARHGAP10
CACTIN
IPO13
HES3
DYNC1LI2
ZNF503
BLCAP
PES1
RWDD1
TAOK3
SUDS3
RPL21
FARSB
C19orf48
FAM187A
EFTUD2
CCDC103
VDAC2
GOSR2
PAK1IP1
C6orf52
MRPS7
GGA3
VTI1B
NCLN
SART3
ISCU
ACTR10
DCTN1
PSMG2
CEP76
PNO1
SEC61B
SF3B3
COG4
DUX4
HES1
EXOSC5
BCKDHA
SUPV3L1
UFM1
SKP1
TSN
IQCG
RPL35A
ATP5MG
PCBP1
TSNAX
PSMD12
ANAPC7
UPF2
MRPL11
RPS27A
CLHC1
SLC35B1
STAM2
STAM
LYRM4
FARS2
COX7A2L
DPH6
REXO1
SRD5A1
NSUN2
CDX2
ZNF576
IRGQ
ZRANB2
HADHB
HADHA
TMED1
RPS12
RBBP5
TTC8
VEZT
FGD6
SELENOF
HS2ST1
PI4KB
SMC2
FRG2C
CAPRIN1
MRPS5
FAM104A
C17orf80
XPNPEP3
ST13
ATOH1
PAF1
MED29
OSGEP
APEX1
IGFBP2
NDUFA4
BABAM2
RBKS
VARS1
NBAS
LZTS1
EIF4ENIF1
GADD45G
GOLGA5
INSM1
ADK
AP3M1
PMAIP1
CCDC33
MALRD1
PDAP1
BUD31
USP1
RPS23
ATP6AP1L
RABGGTB
PROSER1
NHLRC3
ZDHHC1
TM9SF1
ICE1
NFKBIL1
DDX39B
ATP6V1G2
LEFTY2
PTGES2
HOXA4
PHOX2B
KDM8
NEUROG1
SEC11C
BICRA
RPL7
RDH10
APOM
BAG6
CR1L
PIN4
BNIP3
RPS29
LRR1
SUCLG1
CACNA1D
STK36
RNF25
SULF1
ST18
ARHGAP11A-SCG5
ARHGAP11A
TMEM120B
PAX6
ABLIM3
KRT20
MOBP
COMMD1
CCT4
CDX1
TAF9
RAD17
AK6
DLL4
OAZ3
FZD8
SLC10A2
OR6B2
NDUFA10
NEUROD1
TPM1
EPHA5
PANK4
HES5
CLDN2
PRUNE2
TCF7L2
TTYH1
LRATD2
CPSF4L
SOAT2
IGFBP6
CNTN1
UBE2I
DMBX1
FRG2
C16orf91
DCTN3
ARID3C
SALL1
TPRA1
RPN1
CDC42EP2
GADD45GIP1
NUTM2D
ADAM18
GORAB
HOXB3
HOXB4
SMC6
GEN1
ZNF383
PDE6B
ITIH4
MUSTN1
HOXD3
ERRFI1
RBBP7
PRRX1
TBC1D8
SPACA1
PDE12
CCN1
WDR59
SKIL
TESC
RAI14
DLX4
GAD2
SYBU
MRTO4
EMC1
DSCAML1
HHIP
FJX1
TIGD1
EIF4E2
HOXB1
HOXA3
PDHB
HOXA2
ALKBH5
CNPY2
FGF19
GTF3A
PAH
ASCL1
HES7
METTL24
KDM2B
PCBD2
NEK3
SALL4
ZNF746
KIF26A
PDHX
APIP
EIF2S3
HNRNPA2B1
CBX3
ZFX
PTGR1
RBPJ
CATSPERG
EVA1A
STOML2
ADGRL2
RPH3A
ZGPAT
ARFRP1
REV3L
STRA6
TMEM107
CDON
PDPN
HOXB8
HOXB7
EIF2S1
ATP6V1D
ANK2
METTL11B
TSHZ1
KLF17
NOXO1
GFER
ZADH2
GTF3C4
DDX31
AXDND1
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
GFRA3
CYP51A1
LRIG1
TMEM14A
TLE4
BFSP1
MYO10
CLGN
CAMTA1
MRPL38
THRA
RPS24
POLR3A
HNF1A
VOPP1
REC8
SNCG
MMRN2
OTX1
HSPA1B
ID1
HOXC5
CDH16
NFE2
CCDC200
CNTN4
DHX32
TMPPE
GLB1
ADM
RARB
LIG3
LRGUK
MSX1
LBX1
P2RX6
MEIS3
MEIS2
SLC35E3
STK38
DDX3X
LIMCH1
LIN28B
SOX6
PCDH11Y
TPST2
ABCB5
PAX3
TLE3
AGO1
HOXA5
LRIG3
TLN1
CREB3
CPLX1
ALOX5AP
CD99L2
CPN2
WDR74
DAAM1
TRABD2B
SOX21
CSTF2T
TCF4
QPRT
EIF4E3
ZFHX4
PANK2
ZNF367
H3C12
H2BC17
H2AC17
RARA
RGS12
SH2D3C
BNIP2
USP17L20
USP17L22
BRWD1
HSPB8
PAX8
PJA2
PLEKHA5
GAS1
DAPL1
C12orf73
DLG4
ACADVL
PNKD
SOCS3
TTLL6
PLAGL1
PRDM12
PCBP4
SLC44A3
TTI2
SNX1
CIAO2A
NEDD9
FAM107A
NELFA
MTRNR2L1
MTRNR2L2
MSH3
DHFR
MTRNR2L8
CYP26A1
SPATC1L
ARID3B
MAMDC2
CDC73
ID2
IER3
FLOT1
NDUFS7
DHRS3
SH2B1
DPP9
SP2
KAT6B
SEC22B
ERCC1
SPATA25
CTSA
BBS9
TRIP10
GPR108
DNAJB7
NEURL2
SPCS1
GLT8D1
H2AW
TBX3
HOXA1
DUSP6
LIN28A
CDCA7L
ASB2
TEPSIN
NDUFAF8
ANKLE2
DNM2
PCGF1
LBX2
FOXP1
COL23A1
RUNX1T1
TBX2
P4HB
MLEC
FBXO31
HPD
MINDY2
CS
TMEM70
ELOC
ANKRD28
SP5
RPS10-NUDT3
RPS10
SMAD3
SYNPO
LPIN1
HUS1
NPAS4
ID3
TNFRSF19
ARHGEF28
MRPL34
PDE4D
ZFHX3
KIF21B
DOLPP1
TLE1
STX18
RAB5B
KANSL3
FER1L5
ARRDC4
RXRB
PGK1
DONSON
UPF3A
PHC2
XKR7
HOXC4
ATF6
SLC39A7
CBFA2T2
SMPDL3A
OTUD7B
KATNB1
PPP6R3
KDM6B
TRIB1
FRA10AC1
CCDC174
MYLK4
BAIAP2
SNX16
SQSTM1
TMEM101
CLCN3
ABHD2
BCL3
POP5
GPCPD1
PDZRN3
NINJ2
SMARCD2
GATA4
SIRT4
RARG
MFSD10
MTMR4
NR2F1
ABCC10
TOP2A
KCNAB2
ZNF687
ZNF718
ZNF595
SACM1L
PCGF2
NBPF1
ARSG
CCNL2
NRL
MUC3A
FOXP2
SRSF11
MRPS31
PSPN
ALKBH7
SMG6
CNOT2
DYNLT1
HEXIM2
MIDEAS
FURIN
RFX1
LRRC40
ITGAV
ADAP1
POLDIP3
NUBP1
NFKBIA
PKDCC
STIP1
OSBP
EIF2AK3
PSMB3
ZFAND2A
TLE2
RASSF5
RNF103-CHMP3
RMND5A
DCAF11
ZNF608
PPCDC
KNL1
PCNA
IQSEC3
PSMD6
SOD2
ATP5F1B
TRIM41
RNF207
PXYLP1
NR2F6
AHDC1
KAZALD1
MDM2
ABHD8
SLC45A4
KMT5A
LPCAT3
HMGCS1
JUP
CSF3R
RHBDD1
NLK
SMIM20
POLG
SP1
ANKHD1-EIF4EBP3
ANKHD1
RTN4
FTL
PRDM10
NCOA2
GPC6
RAB11B
G3BP1
SEPTIN9
B4GAT1
MYRIP
GLRX5
MACROH2A1
GRSF1
DLC1
CRLS1
CCL26
MBD6
DDIT3
SLC7A5
RBFOX2
TPCN1
TLE6
FAM107B
TRAF7
HNRNPD
ARHGAP24
SREBF1
DDA1
FAM72C
CITED2
SHF
TMEM94
SPG7
GADD45A
TRIM46
PLEKHG2
MIDN
DLG2
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
MTF2
FST
PKN2
CCDC43
PRMT5
KDM3A
ANTKMT
DAGLB
RGS3
EIF3D
INAVA
ACYP1
SSBP4
LCK
FAM167B
STAP2
MYEOV
HPCAL1
SLC6A12
NCDN
KIAA0319L
FGR
ZBTB18
ARID2
ZFP36
SLC30A4
PLEC
ARAP1
CBX5
STX1A
ABCA4
COX5A
SH3YL1
ACP1
MRPS28
ATP6V1E2
HOXC6
ANKMY1
SERPINE1
RAB37
GMEB2
FRMD3
UGP2
LTBR
HNMT
EIF4H
HMGB1
NKD1
CNKSR3
ARID5A
ARHGAP4
KMT2A
CAPNS2
BRMS1
TRDMT1
EVI5L
KIAA0319
CPT1A
ARHGEF10L
SMIM11B
SMIM11A
RHOQ
MRPS24
ILF2
RNF166
GATD3B
GATD3A
CEP41
DNAJB3
LAPTM5
CIC
FAM72D
CDS2
PRKACA
TDRKH
MBD2
SYNJ2
DIABLO
CMSS1
LNPEP
CSRNP1
LIMA1
IFI16
TXNRD1
RAC1
BAHCC1
PHETA1
LFNG
ARID4A
INAFM2
TXNDC11
LUC7L2
ZNF414
FAM72A
SEC14L1
EVPL
SYTL3
HTR5A
KCTD7
IKBKB
ZNF76
WTAP
UBE2F
ARL8A
ROGDI
MSX2
TUBB4B
CXCR4
MT2A
CERK
ANKRD1
AIFM2
COMTD1
IQGAP2
SLC35A3
TCTEX1D4
BTBD19
SORBS2
LRP5L
INSM2
IL6R
USP42
DUSP9
NRM
NRSN2
TUBGCP3
CFL1
GSTP1
RNPEPL1
LAMP1
RNF149
NR2C1
RNF34
CCDC88A
GOT1
ZNF77
CCDC88B
NRXN1
CDK6
USPL1
RASSF2
UACA
NCOA7
BHLHE40
SH2D6
H6PD
EPM2A
SH3BP2
KLHDC2
TMEM60
PHTF2
ING1
LMNA
PIKFYVE
IRF9
PIGV
USP3
CBX4
NRCAM
ZDHHC4
CHD8
EIF1B
ZNF3
KRI1
CDKN2D
NCBP2AS2
NCBP2
RBM15
KLF6
CCL16
ZNF827
LRCH4
FBXO24
CRKL
NHLRC1
OPRM1
SEMA5B
TRAF4
SLC25A19
SCAP
TRIM7
TES
ORMDL3
ERI3
GPAA1
EXOSC4
PC
YTHDF2
NKX1-1
MYADM
ANKS4B
STX16
NKIRAS1
TSPAN4
POLR2L
METRN
TF
MARCHF3
CLK1
INHBE
RXRA
CDC42EP3
GFOD1
TCHP
ICAM1
E4F1
SRSF2
MFSD11
POLR3E
ENO1
NFE2L1
PARK7
NANP
CXXC5
CEBPE
NEO1
TACC1
KPNA4
HSP90B1
CYB5R4
POLR2J3
PCTP
UNC13D
PXMP4
FAAP24
CEP89
ANP32E
HECTD4
ATP2B2
MPND
ATG16L1
ZC2HC1C
TUBB
TTC30B
GPT2
C14orf93
UBE2C
RNF144A
CCDC114
SH3BP4
SRCAP
LOC730183
KCNH7
MVD
ACVR1
DGKZ
TOMM40
MPC1
IRS1
PACSIN2
PAQR8
GBA
GPR35
UGT1A1
L1CAM
LASP1
DDX1
ZCWPW1
MEPCE
LMO4
GGT1
TRAF2
GPATCH8
HNRNPC
PKM
ATP23
ATP5MC1
UBXN10
TBL1X
MPV17L2
CELSR3
ETV4
TANK
ALDH4A1
PLEKHF2
CASC3
CALM2
ETFBKMT
CCDC107
HSPE1-MOB4
HSPE1
HSPD1
LYL1
TMC6
PRR14
STARD4
KMT2E
SCYL1
TMTC4
H4C12
HNRNPUL1
CBFA2T3
FILIP1L
DUSP12
ARNTL
YARS1
S100PBP
PRAM1
SNX3
SDSL
RHBG
ZNF148
LRRC59
METTL25
CCDC59
ZCCHC3
STAT3
FMC1-LUC7L2
FMC1
IL6ST
SHC1
SHB
RFX8
CKS1B
RTBDN
HIBADH
RAB17
PITPNM1
CAT
TMC8
TCERG1
MRS2
GSN
ELOVL6
PLEKHO2
RMDN3
LDLR
DNAJB1
SLC9A1
GRWD1
MAPKAPK3
KRT8
TMC7
LRRN4
PGP
BRICD5
ATP5MPL
KPNB1
FAM24A
CYCS
C8orf37
MAP1LC3B
MTRF1L
BCAR3
DBX1
PPFIBP2
CCDC38
AMDHD1
DEAF1
NCOR2
BAZ1B
IGF2BP3
NRSN1
ERBB2
OPRL1
DCP1A
NRP1
SKA2
PRR11
DTX4
SIRT1
ELF1
ARIH2
CMTR1
ZNF740
CSAD
FARSA
CALR
GRK5
UPP1
TMEM59L
FAM227B