ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584309 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◣ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
RABL2B
RABL2A
PSMD1
NME6
MAPKAPK5
NUP85
LBX1
RWDD1
CACTIN
VDAC2
IPO13
TAOK3
SUDS3
HSPA9
NVL
NEUROG2
POLR3F
DZANK1
BLCAP
DYNC1LI2
FAM187A
EFTUD2
CCDC103
PSMG2
CEP76
NUP205
HADHB
HADHA
VTI1B
RPL21
LYRM4
FARS2
STAM
POLR2E
C19orf48
GOSR2
ATP5MG
FARSB
CAPRIN1
ACTR10
NCLN
FZD8
EXOSC5
BCKDHA
PES1
ZNF503
FRG2C
SRD5A1
NSUN2
SEC61B
TSNAX
TBCK
AIMP1
ZNF576
IRGQ
REXO1
MRPS7
GGA3
TSN
SKP1
UPF2
TTC8
DCTN1
STAM2
SLC35B1
DUX4
RBBP5
PAK1IP1
C6orf52
IQCG
RPL35A
DPH6
SUPV3L1
PCBP1
PI4KB
PNO1
GOLGA5
COX7A2L
MRPL11
VARS1
SART3
ISCU
PDAP1
BUD31
UFM1
ZRANB2
RABGGTB
EIF4ENIF1
ANAPC7
ICE1
PROSER1
NHLRC3
PSMD12
ANK2
HES3
MYLK4
XPNPEP3
ST13
NDUFA4
RPS12
RPS23
ATP6AP1L
SELENOF
HS2ST1
SMPDL3A
C16orf91
FGF19
SMC2
USP1
TMED1
OSGEP
APEX1
BABAM2
RBKS
HOXA4
ADK
AP3M1
TLE4
HES1
APOM
BAG6
EVA1A
RPS27A
CLHC1
DBX1
SEC22B
IGFBP2
DCTN3
ARID3C
MRPS5
VEZT
FGD6
PIN4
SF3B3
COG4
TRABD2B
PAF1
MED29
CDX2
BFSP1
RGS12
FAM104A
C17orf80
NEUROG3
TMEM120B
NBAS
ARHGAP11A-SCG5
ARHGAP11A
ABCG2
LRATD2
PRDM12
UBE2I
PRRX1
BNIP3
ARHGAP10
NFKBIL1
DDX39B
ATP6V1G2
TAF9
RAD17
AK6
COMMD1
CCT4
FOXP2
MEIS2
OR6B2
NDUFA10
SYBU
BICRA
SOX21
TPM1
ARHGAP24
SYNPO
RUNX1T1
ATOH1
FRG2
DMRT3
MRTO4
EMC1
MXI1
RPS29
LRR1
ADAM18
TMEM14A
FOXD3
CCN1
MALRD1
DSCAML1
SKIL
RPL7
RDH10
EIF2S3
LRAT
ERRFI1
TM9SF1
PRUNE2
CACNA1D
SUCLG1
PCDH11Y
INSM1
PAX8
HOXB3
HOXB4
SEC11C
CEP41
ID1
KDM8
PDHB
PRDM13
FGFR2
PTGES2
TLE1
TPST2
HOXA3
LMO4
HOXD3
OR8J1
NUTM2D
TPRA1
RAI14
ATOH8
SLC7A5
SPACA1
METTL24
MSX1
GTF3C4
DDX31
CCDC33
RBBP7
PDE1B
LRIG1
PDZRN3
BAIAP2
PDHX
APIP
CLEC18C
GPR176
LRGUK
ANKLE2
PMAIP1
TLE3
GADD45GIP1
TMEM107
DTX4
KDM2B
HNF1A
WT1
OAZ3
CYP26A1
KIF26A
METTL11B
TPO
DLX4
C12orf73
NR2F1
NEUROD1
LRIG3
NRARP
RGL1
ZFHX4
DAPL1
SPTBN1
SALL1
MYO10
FHL1
SLA
UBE2QL1
CCDC200
PKDCC
TRIM71
SULF1
CDH16
TLE2
HOXB1
ARHGEF28
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
B3GALT5
SEMA6D
TRAF3IP2
TBX3
TMEM70
ELOC
ZNF608
ELMOD2
CAMTA1
NEUROG1
STK36
RNF25
LRRC10B
CDC73
KIF21B
ZFX
PANK4
HES5
CD69
LPIN1
PIM1
LZTS1
NEK3
DMBX1
NEBL
SLAMF8
DAAM1
RPN1
RHOB
PHC2
DDX3X
MAB21L2
ZP4
PCBD2
CCDC198
CHMP4C
GFRA3
CNTN1
ZFHX3
HOXC4
PLAGL1
ZGPAT
ARFRP1
YAP1
C10orf90
TESC
CR1L
NRXN1
CATSPERG
CLDN2
POP5
WRAP53
TP53
USP17L20
USP17L22
LHX2
HOXA2
NXPH4
CNPY2
SOCS3
FOXP1
CLGN
MEF2C
GORAB
FABP5
OCLN
KMT2A
PDE6B
PLPPR1
CNN3
ZNF367
TP53INP1
SOX6
MEOX1
HHIP
HNRNPA2B1
CBX3
MEIS3
ITIH4
MUSTN1
ZNF746
TBC1D8
SALL4
TEX2
RBP3
CETN1
PLEKHA5
SLC39A6
ELP2
NRG2
REC8
CRABP2
ALKBH5
VCAN
IGFN1
RARA
ABLIM3
PAM
GADD45G
DHRS9
NCOR2
FAM222A
SKA2
PRR11
LMO1
SKOR1
LIN28B
PLCH1
NBPF26
NBPF19
NBPF14
PDE12
ADM
GNG12
GUCY2C
ZNF383
ENO1
ERCC1
BBS9
DUSP6
NELFA
DRD2
NCCRP1
REV3L
ECM1
CSN3
CLEC18A
ID2
PDPN
KRT20
PJA2
NPAS1
PCDH18
FAM107A
NEUROD4
LIN28A
ARHGEF1
DHX32
RAN
B3GALT2
FSTL1
DLL4
NCOA2
RASL10B
PKNOX2
PGF
CDC42EP2
GATA3
JAKMIP1
MTMR7
NBPF9
LIMK2
POLR1D
LNX2
SPCS1
GLT8D1
LIX1
TTR
CDRT15L2
RCOR1
WDR59
SYDE2
GSX2
GALNTL5
USP17L11
USP17L21
USP17L12
USP17L18
CDX1
ASXL3
SLC1A3
TNFRSF19
GAD2
FOXB1
KCNK16
LMO3
PRRC2C
GCSAM
VAV3
AGMO
VSTM2L
ARL4C
SOST
GTF3A
NEDD9
PAX3
FGFR4
MNX1
LRP2
DLG2
IRS2
HEY1
DGKZ
ARMC12
CCN2
TSPAN13
PHOX2B
OR5A2
TBL1XR1
MIDEAS
SH3BP5
MRPL38
ADGRL2
DUSP2
ZCCHC13
IPO11
TNP2
PRM3
TYRO3
PEX2
GJA3
SLC10A2
UGT1A4
WBP1L
TMEM132C
PRSS47
TRMT9B
PNKD
FLVCR2
KRTAP12-1
PTPRZ1
CHD8
TMCC3
SFTPC
CA14
KAT6B
PPP1R12B
CLEC18B
CS
ZBTB18
VANGL2
GPC4
BMPR1B
EFNB1
ASPH
BCO1
SH2B1
GFRA1
HES4
VASN
SNCG
MMRN2
TCF4
PAX7
ST18
MSX2
AGPAT4
GPC6
NR2F6
PMFBP1
ABAT
EPB41L5
SLC18A1
TAGLN3
BRWD1
RCOR3
DICER1
PFKM
FAM181A
RPS24
POLR3A
FLRT3
ME2
TRDMT1
PIMREG
WDR74
MYRIP
CRB2
PCBP4
VOPP1
DMD
CER1
CENPS-CORT
CENPS
ABHD11
SLC22A2
CMTR1
TAS2R8
TAS2R7
RAPGEF4
NOTCH1
CNR1
CNOT2
MECOM
PREX2
MTRNR2L1
RARB
MTRNR2L2
MSH3
DHFR
MTRNR2L8
SOAT2
IGFBP6
SPATC1L
ARID3B
MAMDC2
NFE2
IER3
FLOT1
NDUFS7
DHRS3
DPP9
SP2
LEFTY2
SPATA25
CTSA
TRIP10
GPR108
DNAJB7
NEURL2
TTI2
H2AW
HOXA1
CDCA7L
ASB2
TEPSIN
NDUFAF8
DNM2
PCGF1
LBX2
COL23A1
TBX2
P4HB
MLEC
FBXO31
HPD
MINDY2
ANKRD28
SP5
RPS10-NUDT3
RPS10
AXDND1
SMAD3
HUS1
NPAS4
ID3
MRPL34
PDE4D
DOLPP1
STX18
RAB5B
KANSL3
FER1L5
ARRDC4
RXRB
PGK1
DONSON
UPF3A
XKR7
HSPA1B
ATF6
SLC39A7
CBFA2T2
OTUD7B
KATNB1
RBPJ
PPP6R3
KDM6B
PANK2
TRIB1
FRA10AC1
CCDC174
SNX16
SQSTM1
TMEM101
CLCN3
ABHD2
BCL3
GPCPD1
NINJ2
SMARCD2
GATA4
SIRT4
RARG
MFSD10
MTMR4
ABCC10
TOP2A
KCNAB2
ZNF687
ZNF718
ZNF595
SACM1L
PCGF2
NBPF1
ARSG
CCNL2
NRL
MUC3A
SRSF11
MRPS31
QPRT
PSPN
ALKBH7
SMG6
DYNLT1
HEXIM2
FURIN
RFX1
LRRC40
ITGAV
ADAP1
POLDIP3
NUBP1
NFKBIA
STIP1
OSBP
EIF2AK3
PSMB3
ZFAND2A
RASSF5
RNF103-CHMP3
RMND5A
DCAF11
PPCDC
KNL1
PCNA
IQSEC3
PSMD6
SOD2
ATP5F1B
TRIM41
RNF207
PXYLP1
AHDC1
KAZALD1
MDM2
ABHD8
SLC45A4
KMT5A
LPCAT3
HMGCS1
AGO1
JUP
CSF3R
RHBDD1
NLK
SMIM20
POLG
SP1
ANKHD1-EIF4EBP3
ANKHD1
RTN4
FTL
PRDM10
RAB11B
G3BP1
SEPTIN9
B4GAT1
LIG3
GLRX5
MACROH2A1
GRSF1
DLC1
CRLS1
CCL26
MBD6
DDIT3
RBFOX2
TPCN1
TLE6
FAM107B
TRAF7
HNRNPD
SREBF1
DDA1
FAM72C
CITED2
SHF
TMEM94
SPG7
GADD45A
TRIM46
PLEKHG2
MIDN
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
MTF2
FST
PKN2
CCDC43
PRMT5
KDM3A
ANTKMT
DAGLB
RGS3
EIF3D
INAVA
ACYP1
SSBP4
LCK
FAM167B
STAP2
MYEOV
HPCAL1
SLC6A12
NCDN
KIAA0319L
FGR
ARID2
ZFP36
SLC30A4
PLEC
CYP51A1
ARAP1
CBX5
STX1A
ABCA4
TLN1
CREB3
H3C12
H2BC17
H2AC17
COX5A
SH3YL1
ACP1
MRPS28
ATP6V1E2
HOXC6
ANKMY1
SERPINE1
RAB37
TCF7L2
GMEB2
FRMD3
UGP2
LTBR
HNMT
EIF4H
HMGB1
NKD1
CNKSR3
ARID5A
ARHGAP4
CAPNS2
BRMS1
EVI5L
KIAA0319
CPT1A
ARHGEF10L
SMIM11B
SMIM11A
RHOQ
MRPS24
ILF2
RNF166
GATD3B
GATD3A
DNAJB3
LAPTM5
CIC
FAM72D
CDS2
PRKACA
TDRKH
MBD2
SYNJ2
DIABLO
CMSS1
LNPEP
CSRNP1
LIMA1
IFI16
HOXC5
TXNRD1
RAC1
BAHCC1
PHETA1
LFNG
ARID4A
INAFM2
TXNDC11
LUC7L2
ZNF414
FAM72A
SEC14L1
EVPL
SYTL3
HTR5A
KCTD7
IKBKB
ZNF76
WTAP
UBE2F
ARL8A
ROGDI
TUBB4B
CXCR4
MT2A
CERK
ANKRD1
AIFM2
COMTD1
IQGAP2
SLC35A3
TCTEX1D4
BTBD19
SORBS2
TIGD1
EIF4E2
LRP5L
INSM2
IL6R
USP42
DUSP9
NRM
NRSN2
TUBGCP3
CFL1
GSTP1
RNPEPL1
LAMP1
RNF149
NR2C1
RNF34
CCDC88A
GOT1
ZNF77
CCDC88B
CDK6
USPL1
RASSF2
UACA
NCOA7
BHLHE40
SH2D6
H6PD
EPM2A
SH3BP2
KLHDC2
PAX6
TMEM60
PHTF2
ING1
LMNA
PIKFYVE
IRF9
PIGV
USP3
CBX4
NRCAM
ZDHHC4
EIF1B
CPSF4L
ZNF3
KRI1
CDKN2D
NCBP2AS2
NCBP2
RBM15
KLF6
CCL16
ZNF827
LRCH4
FBXO24
CRKL
NHLRC1
OPRM1
SEMA5B
TRAF4
SLC25A19
SCAP
TRIM7
TES
ORMDL3
ERI3
GPAA1
EXOSC4
PC
YTHDF2
NKX1-1
MYADM
ANKS4B
STX16
NKIRAS1
TSPAN4
POLR2L
METRN
TF
MARCHF3
CLK1
INHBE
RXRA
CDC42EP3
GFOD1
TCHP
ICAM1
E4F1
SRSF2
MFSD11
POLR3E
NFE2L1
PARK7
NANP
CXXC5
CEBPE
NEO1
TACC1
KPNA4
HSP90B1
CYB5R4
POLR2J3
PCTP
UNC13D
PXMP4
FAAP24
CEP89
ANP32E
HECTD4
ATP2B2
MPND
ATG16L1
ZC2HC1C
TUBB
TTC30B