ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584307 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◣ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

RABL2B
RABL2A
MAPKAPK5
POLR3F
DZANK1
PSMD1
NME6
IPO13
ZNF335
NCLN
DYNC1LI2
CACTIN
TAOK3
SUDS3
RWDD1
NUP85
NEUROG2
VDAC2
POLR2E
VTI1B
MRPS7
GGA3
PSMG2
CEP76
HSPA9
NUP205
TSN
FAM187A
EFTUD2
CCDC103
TBCK
AIMP1
GOSR2
NVL
REXO1
DCTN1
TSNAX
RPL21
STAM2
SKP1
ZNF576
IRGQ
EXOSC5
BCKDHA
PES1
SEC61B
C19orf48
CAPRIN1
STAM
BLCAP
SRD5A1
NSUN2
PNO1
RBBP5
SLC35B1
UPF2
LYRM4
FARS2
FARSB
ACTR10
ATP5MG
NEUROG3
PCBP1
NDUFA4
PAK1IP1
C6orf52
HADHB
HADHA
GOLGA5
PSMD12
ZRANB2
TMED1
COX7A2L
VARS1
TTC8
DPH6
SUPV3L1
LBX1
ANAPC7
PI4KB
SART3
ISCU
UFM1
PDAP1
BUD31
MRPS5
ICE1
FRG2C
IQCG
RPL35A
SF3B3
COG4
SELENOF
HS2ST1
RPS23
ATP6AP1L
MRPL11
RABGGTB
ADK
AP3M1
BABAM2
RBKS
DUX4
USP1
PROSER1
NHLRC3
SMC2
FAM104A
C17orf80
EIF4ENIF1
OSGEP
APEX1
XPNPEP3
ST13
RPS12
RPS27A
CLHC1
BICRA
PAF1
MED29
HES3
ZNF503
UBE2I
COMMD1
CCT4
TM9SF1
OR6B2
NDUFA10
HES1
BNIP3
VEZT
FGD6
NBAS
MRTO4
EMC1
ARHGAP11A-SCG5
ARHGAP11A
ATOH1
FZD8
DCTN3
ARID3C
PIN4
APOM
BAG6
RPS29
LRR1
RBBP7
GTF3C4
DDX31
NEUROD1
INSM1
NFKBIL1
DDX39B
ATP6V1G2
C16orf91
RPN1
ARHGAP10
ARHGEF1
FRG2
SUCLG1
CDC73
NEUROG1
CCDC33
OAZ3
EIF2S3
ANKLE2
TAF9
RAD17
AK6
PMAIP1
SKIL
TPM1
ADAM18
CDX2
SEC11C
RPL7
RDH10
PCBD2
PDHX
APIP
GADD45GIP1
CR1L
LPIN1
PRUNE2
CCDC200
ZGPAT
ARFRP1
EVA1A
STK36
RNF25
ZP4
PRDM12
ALKBH5
IGFBP2
PTGES2
DLX4
ZNF383
KDM8
SRSF11
LRRC40
CNPY2
TLE2
ANK2
PDHB
NOXO1
GFER
DBX1
FGF19
SH2B1
AXDND1
RYBP
GORAB
TMEM70
ELOC
LRATD2
ECM1
ERRFI1
KIF26A
CCN1
KIF21B
SEC22B
WDR59
TRABD2B
HOXB1
CLDN2
PDE12
MYLK4
EIF4H
TEX46
KDM1A
NELFA
SLC7A5
RBPJ
DMBX1
SULF1
MEIS2
RGS12
CASC3
DLL4
PRRX1
BFSP1
DTX4
CLEC18C
MYRIP
KDM2B
SPCS1
GLT8D1
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
BBS9
HSPA1B
LRGUK
MALRD1
TBC1D8
TMEM120B
RAI14
PDE6B
JAKMIP1
SYNPO
DDX3X
TPRA1
BRWD1
TLE4
NUTM2D
CLGN
ZNF746
ZCWPW1
MEPCE
GFRA3
NRDE2
CDIP1
HOXB3
ID1
HOXB4
TESC
TIGD1
EIF4E2
SOAT2
IGFBP6
POP5
DGKZ
HOXA4
MRPL38
ARL14EP
GTF3A
NRXN1
SLC7A6OS
PRMT7
HOXD3
CNTLN
C12orf73
CS
PCBP2
FAM83E
SPHK2
RPL18
SMPDL3A
SLC10A2
SYBU
GATA3
ZFHX3
PAX8
PNKD
DAPL1
FOXP2
SOX21
TRIM41
VOPP1
LRIG1
ZNF341
USP17L20
USP17L22
RNF138
RPS10-NUDT3
RPS10
GADD45G
NCBP3
CCDC43
DMRT3
RNF32
ADGRL2
NEUROD4
GPT
MFSD3
ERCC1
RPS26
WDR47
SFT2D2
CHN2
CPVL
ACBD6
B3GALT5
MXI1
GAD2
SKOR1
NPAS4
SRRM3
CALHM6
ZNF292
RASL10B
BAIAP2
CATSPERG
SLC39A6
ELP2
DUSP2
DAAM1
PKNOX2
ITIH4
MUSTN1
TCHP
E2F6
CDH16
TPST2
RARA
CHD8
HNF1A
OR8J1
CPLX1
AP1B1
CNN3
C12orf42
SPACA1
TMEM107
HNRNPA2B1
CBX3
CDC42EP2
VANGL2
DNAJB2
SALL1
CLEC18B
ID2
MYO10
CAMTA1
CDX1
EVI5
RUNX1T1
SGK3
HHIP
MSX2
KMT2A
PEX2
DHX32
SEMA4B
HNRNPD
ZNF891
ZNF10
LRP2
RHBDD1
TRDMT1
RCOR1
ITPRIP
KAT6A
TUBB3
PLXNB1
RGL1
POLR2J3
FTCDNL1
MET
SEMA6D
TBC1D15
ZNF367
NEK3
USP17L11
USP17L21
USP17L12
USP17L18
USP17L15
YAP1
MTRNR2L1
WDR74
RARB
MTRNR2L2
MSH3
DHFR
MTRNR2L8
CYP26A1
SPATC1L
ARID3B
MAMDC2
HOXA3
NFE2
IER3
FLOT1
NDUFS7
DHRS3
DPP9
SP2
KAT6B
LEFTY2
SPATA25
CTSA
TRIP10
GPR108
DNAJB7
TLE3
PHOX2B
NEURL2
TTI2
H2AW
HOXA2
ST18
TBX3
HOXA1
DUSP6
LIN28A
METTL24
CDCA7L
ASB2
TEPSIN
NDUFAF8
DNM2
PCGF1
LBX2
FOXP1
COL23A1
TBX2
P4HB
MLEC
FBXO31
HPD
MINDY2
ANKRD28
SP5
SMAD3
HUS1
ID3
TNFRSF19
ARHGEF28
MRPL34
PDE4D
DOLPP1
TLE1
STX18
RAB5B
KANSL3
FER1L5
ARRDC4
RXRB
PGK1
DONSON
UPF3A
PHC2
XKR7
HOXC4
ATF6
SLC39A7
MSX1
CBFA2T2
OTUD7B
KATNB1
PPP6R3
RPS24
POLR3A
KDM6B
LZTS1
PANK2
TRIB1
FRA10AC1
CCDC174
SNX16
SQSTM1
TMEM101
CLCN3
ABHD2
BCL3
GPCPD1
PDZRN3
NINJ2
SMARCD2
GATA4
SIRT4
RARG
MFSD10
MTMR4
NR2F1
ABCC10
TOP2A
KCNAB2
ZNF687
ZNF718
ZNF595
SACM1L
PCGF2
NBPF1
ZFHX4
ARSG
CCNL2
NRL
MUC3A
MRPS31
QPRT
PSPN
ALKBH7
SMG6
CNOT2
DYNLT1
HEXIM2
MIDEAS
FURIN
RFX1
ITGAV
ADAP1
POLDIP3
NUBP1
NFKBIA
PKDCC
STIP1
CNTN1
OSBP
EIF2AK3
PSMB3
ZFAND2A
RASSF5
RNF103-CHMP3
RMND5A
DCAF11
ZNF608
PPCDC
KNL1
PCNA
IQSEC3
PSMD6
SOD2
ATP5F1B
RNF207
PXYLP1
NR2F6
AHDC1
KAZALD1
MDM2
ABHD8
SLC45A4
KMT5A
LPCAT3
HMGCS1
AGO1
JUP
CSF3R
NLK
SMIM20
POLG
SP1
ANKHD1-EIF4EBP3
ANKHD1
RTN4
FTL
PRDM10
NCOA2
GPC6
RAB11B
G3BP1
SEPTIN9
B4GAT1
LIG3
GLRX5
MACROH2A1
GRSF1
DSCAML1
DLC1
CRLS1
CCL26
MBD6
DDIT3
RBFOX2
TPCN1
TLE6
FAM107B
TRAF7
ARHGAP24
SREBF1
DDA1
FAM72C
CITED2
SHF
TMEM94
SPG7
GADD45A
TRIM46
PLEKHG2
METTL11B
MIDN
DLG2
SOCS3
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
MTF2
FST
PKN2
PRMT5
KDM3A
ANTKMT
DAGLB
RGS3
EIF3D
INAVA
ACYP1
SSBP4
LCK
FAM167B
STAP2
MYEOV
HPCAL1
SLC6A12
NCDN
KIAA0319L
FGR
ZBTB18
ARID2
ZFP36
SLC30A4
PLEC
CYP51A1
ARAP1
CBX5
STX1A
ABCA4
TLN1
CREB3
H3C12
H2BC17
H2AC17
COX5A
SH3YL1
ACP1
MRPS28
ATP6V1E2
HOXC6
ANKMY1
SERPINE1
RAB37
TCF7L2
GMEB2
FRMD3
UGP2
LTBR
HNMT
ADM
HMGB1
NKD1
CNKSR3
ARID5A
ARHGAP4
CAPNS2
BRMS1
EVI5L
KIAA0319
CPT1A
ARHGEF10L
SMIM11B
SMIM11A
RHOQ
MRPS24
ILF2
RNF166
GATD3B
GATD3A
CEP41
DNAJB3
LAPTM5
CIC
SNCG
MMRN2
FAM72D
CDS2
PRKACA
TDRKH
MBD2
SYNJ2
DIABLO
CMSS1
LNPEP
CACNA1D
CSRNP1
LIMA1
PLAGL1
IFI16
HOXC5
TXNRD1
RAC1
BAHCC1
PHETA1
LFNG
ARID4A
INAFM2
TXNDC11
LUC7L2
ZNF414
FAM72A
SEC14L1
EVPL
SYTL3
HTR5A
KCTD7
IKBKB
ZNF76
WTAP
UBE2F
ARL8A
ROGDI
TUBB4B
CXCR4
MT2A
CERK
ANKRD1
AIFM2
COMTD1
IQGAP2
SLC35A3
TCTEX1D4
BTBD19
SORBS2
LRP5L
INSM2
IL6R
USP42
DUSP9
NRM
NRSN2
TUBGCP3
CFL1
GSTP1
RNPEPL1
LAMP1
RNF149
NR2C1
RNF34
CCDC88A
GOT1
ZNF77
CCDC88B
CDK6
USPL1
RASSF2
UACA
NCOA7
BHLHE40
SH2D6
H6PD
NEDD9
EPM2A
SH3BP2
KLHDC2
PAX6
TMEM60
PHTF2
ING1
LMNA
PIKFYVE
IRF9
PIGV
USP3
CBX4
NRCAM
ZDHHC4
EIF1B
CPSF4L
ZNF3
KRI1
CDKN2D
NCBP2AS2
NCBP2
RBM15
KLF6
CCL16
ZNF827
LRCH4
FBXO24
CRKL
NHLRC1
OPRM1
SEMA5B
TRAF4
SLC25A19
SCAP
TRIM7
TES
ORMDL3
ERI3
GPAA1
EXOSC4
PC
YTHDF2
NKX1-1
MYADM
ANKS4B
STX16
NKIRAS1
TSPAN4
POLR2L
METRN
TF
MARCHF3
CLK1
INHBE
RXRA
CDC42EP3
GFOD1
ICAM1
E4F1
SRSF2
MFSD11
POLR3E
ENO1
NFE2L1
PARK7
NANP
CXXC5
CEBPE
NEO1
TACC1
KPNA4
HSP90B1
CYB5R4
PCTP
UNC13D
PXMP4
FAAP24
CEP89
ANP32E
HECTD4
ATP2B2
MPND
ATG16L1
ZC2HC1C
TUBB
TTC30B
GPT2
C14orf93
UBE2C
RNF144A
CCDC114
SH3BP4
SRCAP
LOC730183
KCNH7
MVD
ACVR1
TOMM40
MPC1
IRS1
PACSIN2
PAQR8
GBA
GPR35
UGT1A1
L1CAM
LASP1
DDX1
LMO4
GGT1
TRAF2
GPATCH8
SNX1
CIAO2A
HNRNPC
PKM
ATP23
ATP5MC1
UBXN10
TBL1X
MPV17L2
CELSR3
TCF4
ETV4
TANK
ALDH4A1
PLEKHF2
CALM2
ABLIM3
ETFBKMT
CCDC107
HSPE1-MOB4
HSPE1
HSPD1
LYL1
TMC6
PRR14
STARD4
KMT2E
SCYL1
TMTC4
H4C12
HNRNPUL1
CBFA2T3
FILIP1L
DUSP12
ARNTL
YARS1
S100PBP
PRAM1
SNX3
SDSL
RHBG
ZNF148
LRRC59
METTL25
CCDC59
ZCCHC3
STAT3
FMC1-LUC7L2
FMC1
IL6ST
SHC1
SHB
RFX8
CKS1B
TMPPE
RTBDN
GLB1
HIBADH
RAB17
PITPNM1
CAT
TMC8
TCERG1
MRS2
GSN
ELOVL6
PLEKHO2
RMDN3
LDLR
DNAJB1
SLC9A1
GRWD1
MAPKAPK3
KRT8
TMC7
LRRN4
PGP
BRICD5
ATP5MPL
KPNB1
FAM24A
CYCS
C8orf37
MAP1LC3B
MTRF1L
BCAR3
PPFIBP2
CCDC38
AMDHD1
TMEM14A
DEAF1
NCOR2
BAZ1B
IGF2BP3
NRSN1
ERBB2
OPRL1
DCP1A
NRP1
SKA2
PRR11