ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584302 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◣ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
SP5
RABL2B
RABL2A
POLR3F
DZANK1
ZNF503
MAPKAPK5
CACTIN
LEFTY2
NME6
NUP85
PSMG2
CEP76
HSPA9
IPO13
NVL
PSMD1
POLR2E
TAOK3
SUDS3
RWDD1
PHOX2B
NEUROG2
VDAC2
C19orf48
SLC35B1
EXOSC5
BCKDHA
DYNC1LI2
NDUFA4
FRG2C
ZNF576
IRGQ
TSN
FARSB
DCTN1
UPF2
RPL21
GOSR2
TBCK
AIMP1
VTI1B
FAM187A
EFTUD2
CCDC103
NUP205
ATP5MG
REXO1
PMAIP1
NCLN
ANAPC7
ACTR10
DUX4
CAPRIN1
BLCAP
STAM
SEC61B
MRPS7
GGA3
HADHB
HADHA
STAM2
MSX1
PNO1
SKP1
DPH6
PI4KB
IQCG
RPL35A
GRSF1
PES1
TMED1
COX7A2L
CNTN1
SRD5A1
NSUN2
SMC6
GEN1
PAK1IP1
C6orf52
GOLGA5
TSNAX
TTC8
LYRM4
FARS2
ZP4
BABAM2
RBKS
RBBP5
UBE2I
ICE1
MRPS5
PSMD12
UFM1
TCF7L2
PDAP1
BUD31
SART3
ISCU
PAF1
MED29
PCBP1
RPS12
RPS23
ATP6AP1L
SF3B3
COG4
USP1
RPS27A
CLHC1
PROSER1
NHLRC3
FAM104A
C17orf80
SELENOF
HS2ST1
SUPV3L1
VARS1
SMC2
ZRANB2
RABGGTB
TM9SF1
EIF4ENIF1
ARHGAP10
PRSS56
PRRX1
GRIP1
ADK
AP3M1
HES3
MUC12
MRPL11
APOM
BAG6
PIN4
NEUROG3
OSGEP
APEX1
PTGES2
SPECC1
BICRA
XPNPEP3
ST13
NFKBIL1
DDX39B
ATP6V1G2
FRG2
STK36
RNF25
HES7
OR2L13
OR2AJ1
COMMD1
CCT4
PAX6
SIX1
CCDC33
RPS29
LRR1
MESP1
OR6B2
NDUFA10
PDE6B
LZTS1
MSGN1
NEUROG1
SUCLG1
ATOH1
OAZ3
PDZD2
CCDC200
DEFB106B
DEFB106A
GADD45GIP1
ID2
ADGRL2
OTX1
H3C12
H2BC17
H2AC17
TLE3
ABLIM3
CDX1
GADD45G
ARHGAP11A-SCG5
ARHGAP11A
EOLA2
CERS6
ZGPAT
ARFRP1
CR1L
TAF9
RAD17
AK6
ZSWIM6
RPL7
RDH10
TLE6
ZNF383
SEC11C
SLAMF8
ID3
STK38
KRT20
SLC39A8
KCNJ5
SRCIN1
HOXA3
CNPY2
RXRB
SLC39A7
HSD17B8
PBX3
IGFBP2
RPN1
LYPD6B
TMPPE
GLB1
EBP
SP8
SHMT2
NEBL
ALDH1A2
MRTO4
EMC1
CDC73
HOXA4
EIF2S3
PDHX
APIP
HOXB3
CLGN
HOXB4
KLF17
ANKLE2
SMPD1
CPSF4L
CDC42EP2
KLHL25
APBA1
OTX2
COQ3
SCN2A
TBX3
VENTX
HOXD3
CDON
CACNA1D
SKIL
MSX2
DKK1
GPR78
NKD1
GAD2
GTF3C4
DDX31
USP17L20
USP17L22
PDPN
HOXA2
SNCG
MMRN2
BNIP2
GORAB
KDM2B
USP17L11
USP17L21
USP17L12
USP17L18
TLE2
ST18
PDE12
EYA1
MEIS3
LRATD2
PTGES3
SRGAP2C
SRGAP2B
USP17L15
IPO8
NFE2
FGFR2
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
SOST
GIMAP5
METTL11B
CBX4
ALKBH5
NKX2-2
PAX2
ZNF746
SP7
CSTF2T
LRGUK
ASIP
SYBU
FTL
ATP1A4
PAX8
ITGB5
RPS24
POLR3A
TPRA1
CCN1
NR6A1
MPP4
DMBX1
GATA3
HERPUD1
PRUNE2
WASHC3
TTYH1
REC8
CTXN3
CWC22
SPCS1
GLT8D1
TMEM123
UQCC2
CPN2
FAM3C
DPEP1
HES1
CHN2
CPVL
CCDC85A
TMEM107
ECM2
UNC5C
AGO1
FGF2
KCNN2
PPM1B
PRICKLE1
HAO1
LEF1
MYRIP
SH2D3C
LZTFL1
ABCA5
PCBD2
MSI2
EML4
RBFOX2
VOPP1
DLL4
EIF2S1
ATP6V1D
MVB12A
CDK15
MTRNR2L1
WDR74
RARB
MTRNR2L2
MSH3
DHFR
MTRNR2L8
CDX2
SOAT2
IGFBP6
VEZT
FGD6
FZD8
CYP26A1
SPATC1L
ARID3B
MAMDC2
RARA
IER3
FLOT1
C16orf91
NDUFS7
DHRS3
SH2B1
NEUROD1
DPP9
SP2
BNIP3
KAT6B
SEC22B
ERCC1
SPATA25
CTSA
BBS9
LBX1
TPM1
TRIP10
GPR108
TLE4
MRPL38
DNAJB7
NEURL2
TTI2
H2AW
HOXA1
DUSP6
INSM1
LIN28A
METTL24
CDCA7L
ASB2
TEPSIN
NDUFAF8
ERRFI1
FGF19
ADAM18
DNM2
PCGF1
LBX2
NBAS
FOXP1
COL23A1
RUNX1T1
TBX2
P4HB
MLEC
FBXO31
HPD
MINDY2
CS
TMEM70
ELOC
ANKRD28
RPS10-NUDT3
RPS10
AXDND1
PDHB
SMAD3
SYNPO
DAPL1
DLX4
LPIN1
HUS1
NPAS4
CAMTA1
TNFRSF19
ARHGEF28
MRPL34
PDE4D
ZFHX3
KIF21B
DOLPP1
DCTN3
TLE1
STX18
RAB5B
KANSL3
FER1L5
ARRDC4
ANK2
PGK1
TMEM120B
ARID3C
DONSON
UPF3A
PHC2
XKR7
HSPA1B
HOXC4
ATF6
NELFA
CBFA2T2
SMPDL3A
OTUD7B
KATNB1
RBPJ
PPP6R3
KDM6B
PANK2
TRIB1
FRA10AC1
CCDC174
MYLK4
BAIAP2
SNX16
SQSTM1
TMEM101
CLCN3
ABHD2
BCL3
POP5
GPCPD1
PDZRN3
NINJ2
SMARCD2
GATA4
SIRT4
RARG
MFSD10
MTMR4
NR2F1
ABCC10
TOP2A
ID1
KCNAB2
ZNF687
ZNF718
ZNF595
ZNF367
SACM1L
PCGF2
NBPF1
ZFHX4
ARSG
CCNL2
NRL
MUC3A
FOXP2
SRSF11
MRPS31
QPRT
PSPN
ALKBH7
SMG6
CNOT2
DYNLT1
HEXIM2
MIDEAS
FURIN
RFX1
LRRC40
ITGAV
ADAP1
POLDIP3
NUBP1
NFKBIA
PKDCC
STIP1
OSBP
EIF2AK3
PSMB3
ZFAND2A
RASSF5
RNF103-CHMP3
RMND5A
DCAF11
ZNF608
PPCDC
KNL1
PCNA
IQSEC3
PSMD6
SOD2
ATP5F1B
TRIM41
RNF207
PXYLP1
NR2F6
AHDC1
RBBP7
HNRNPA2B1
CBX3
KAZALD1
MDM2
ABHD8
SLC45A4
KMT5A
LPCAT3
HMGCS1
KDM8
JUP
CSF3R
RHBDD1
NLK
SMIM20
POLG
SP1
MALRD1
ANKHD1-EIF4EBP3
ANKHD1
RTN4
PRDM10
NCOA2
GPC6
RAB11B
G3BP1
SEPTIN9
B4GAT1
LIG3
GLRX5
MACROH2A1
EVA1A
DSCAML1
DLC1
CRLS1
CCL26
MBD6
DDIT3
SLC7A5
TPCN1
FAM107B
RGS12
TRAF7
HNRNPD
ARHGAP24
SREBF1
DDA1
FAM72C
CITED2
SHF
TMEM94
SPG7
GADD45A
TRIM46
MEIS2
PLEKHG2
MIDN
DLG2
SOCS3
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
MTF2
FST
PKN2
CCDC43
PRMT5
KDM3A
ANTKMT
DAGLB
RGS3
BFSP1
EIF3D
INAVA
ACYP1
SSBP4
LCK
FAM167B
NEK3
STAP2
MYEOV
HPCAL1
SLC6A12
NCDN
KIAA0319L
FGR
ZBTB18
ARID2
ZFP36
SLC30A4
PLEC
CYP51A1
ARAP1
CBX5
STX1A
ABCA4
TLN1
CREB3
COX5A
SH3YL1
ACP1
MRPS28
ATP6V1E2
HOXC6
ANKMY1
SERPINE1
RAB37
GMEB2
FRMD3
UGP2
LTBR
HNMT
ADM
EIF4H
HMGB1
CNKSR3
ARID5A
ARHGAP4
KMT2A
CAPNS2
BRMS1
TRDMT1
EVI5L
KIAA0319
CPT1A
ARHGEF10L
SMIM11B
SMIM11A
RHOQ
MRPS24
ILF2
RNF166
GATD3B
GATD3A
CEP41
DNAJB3
LAPTM5
CIC
FAM72D
CDS2
PRKACA
TDRKH
HOXB1
MBD2
SYNJ2
DIABLO
CMSS1
LNPEP
CSRNP1
LIMA1
PLAGL1
IFI16
HOXC5
TXNRD1
RAC1
BAHCC1
PHETA1
LFNG
ARID4A
INAFM2
TXNDC11
GTF3A
LUC7L2
ZNF414
PNKD
FAM72A
SEC14L1
EVPL
SYTL3
HTR5A
KCTD7
IKBKB
ZNF76
WTAP
UBE2F
ARL8A
ROGDI
TUBB4B
CXCR4
MT2A
TRABD2B
CERK
ANKRD1
AIFM2
COMTD1
IQGAP2
SLC35A3
TCTEX1D4
BTBD19
SORBS2
TIGD1
EIF4E2
LRP5L
INSM2
IL6R
USP42
DUSP9
NRM
C12orf73
NRSN2
TUBGCP3
CFL1
GSTP1
RNPEPL1
LAMP1
RNF149
NR2C1
RNF34
CCDC88A
GOT1
ZNF77
CCDC88B
NRXN1
CDK6
USPL1
RASSF2
LRIG1
UACA
NCOA7
BHLHE40
SH2D6
H6PD
NEDD9
EPM2A
SH3BP2
KLHDC2
TMEM60
PHTF2
ING1
RAI14
LMNA
PIKFYVE
IRF9
PIGV
USP3
NRCAM
PRDM12
ZDHHC4
CHD8
EIF1B
ZNF3
KRI1
CDKN2D
NCBP2AS2
NCBP2
RBM15
KLF6
CCL16
ZNF827
LRCH4
FBXO24
CRKL
NHLRC1
OPRM1
SEMA5B
TRAF4
SLC25A19
SCAP
TRIM7
TES
ORMDL3
ERI3
GPAA1
EXOSC4
PC
YTHDF2
NKX1-1
MYADM
ANKS4B
STX16
NKIRAS1
TSPAN4
POLR2L
METRN
TF
MARCHF3
CLK1
INHBE
RXRA
CDC42EP3
GFOD1
TCHP
ICAM1
E4F1
SRSF2
MFSD11
POLR3E
ENO1
NFE2L1
PARK7
NANP
CXXC5
CEBPE
NEO1
TACC1
KPNA4
HSP90B1
CYB5R4
POLR2J3
PCTP
UNC13D
PXMP4
FAAP24
CEP89
ANP32E
HECTD4
ATP2B2
MPND
ATG16L1
ZC2HC1C
TUBB
TTC30B
GPT2
C14orf93
UBE2C
RNF144A
CCDC114
SH3BP4
SULF1
SRCAP
LOC730183
KCNH7
MVD
ACVR1
DGKZ
TOMM40
MPC1
IRS1
PACSIN2
PAQR8
GBA
BRWD1
GPR35
UGT1A1
L1CAM
LASP1
DDX1
ZCWPW1
MEPCE
LMO4
GGT1
TRAF2
GPATCH8
SNX1
CIAO2A
HNRNPC
PKM
ATP23
ATP5MC1
UBXN10
TBL1X
MPV17L2
CELSR3
TCF4
ETV4
TANK
ALDH4A1
PLEKHF2
CASC3
CALM2
ETFBKMT
CCDC107
HSPE1-MOB4
HSPE1
HSPD1
LYL1
TMC6
PRR14
STARD4
KMT2E
SCYL1
TMTC4
H4C12
HNRNPUL1
CBFA2T3
FILIP1L
DUSP12
ARNTL
YARS1
S100PBP
PRAM1
SNX3
SDSL
RHBG
ZNF148
LRRC59
METTL25
CCDC59
ZCCHC3
STAT3
FMC1-LUC7L2
FMC1
IL6ST
SHC1
SHB
RFX8
CKS1B
RTBDN
HIBADH
RAB17
PITPNM1
CAT
TMC8
TCERG1
MRS2
GSN
ELOVL6
PLEKHO2
RMDN3
LDLR
DNAJB1
SLC9A1
GRWD1
MAPKAPK3
KRT8
TMC7
LRRN4
PGP
BRICD5
ATP5MPL
KPNB1
FAM24A
CYCS
C8orf37
MAP1LC3B
MTRF1L
BCAR3
DBX1
PPFIBP2
CCDC38
AMDHD1
TMEM14A
DEAF1
NCOR2
BAZ1B
IGF2BP3
NRSN1
ERBB2
OPRL1
DCP1A
NRP1
SKA2