ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX17639400 | NB-4
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◣ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

MTRNR2L1
MTRNR2L8
PDE6B
ZGPAT
ARFRP1
MTRNR2L2
MSH3
DHFR
IER3
FLOT1
NFE2
BABAM2
RBKS
COL23A1
CCDC200
PRAM1
CCDC88B
LAPTM5
DUX4
SKIL
INAVA
SMIM20
KAT6B
RASGRP2
STX1A
PCNA
CDS2
UPF3A
ZNF746
ICAM1
NR2C2
C16orf54
MUC3A
MEF2D
ANKMY1
RNPEPL1
ARHGEF18
ARHGAP4
MRPS31
FRG2C
KANSL3
FER1L5
ARID3B
ZNF740
CSAD
NDUFA4
ERCC1
CXXC5
RARG
LIMK1
PITPNM2
NCOA4
SMG6
FTL
RNF166
KEAP1
PPCDC
ZNF414
AGTRAP
SERTAD2
SCAP
MYEOV
FRG2
MTG1
GH1
SRCAP
LOC730183
ZNF718
ZNF595
HUS1
ANPEP
MUC1
GDPGP1
CIB1
NR2C1
CEBPE
DNAJC16
CASP9
ZGLP1
TXNDC11
MYRF
USP37
CNOT9
ASB2
LPCAT3
SPDYE13
MDM2
PARP2
PICALM
MAP3K8
DENND6A
DZIP3
CIP2A
MBD6
DDIT3
DNAJB2
COX5A
CTCF
CCDC114
PLIN2
EMP3
MYO1G
TRPM2
SHISAL2A
MTRF1L
YARS1
S100PBP
MRPL4
PDE4B
ZNF217
SOD2
WTAP
OPRL1
LKAAEAR1
PPP3CB
SREBF1
RASSF2
SEC14L1
CCL2
SLC35C1
MED9
PPP1R27
MCRIP1
TYROBP
RAB3D
MACROH2A1
MPC1
SBF1
KAZALD1
CXCR4
SEPTIN2
HDLBP
CD38
TMEM182
ANKRD18B
KMT5A
SIK1B
SIK1
DRC7
STX18
ING1
ZNRD2
FAM89B
ARL4A
EHBP1L1
SH2B3
MAP1LC3B2
MFN2
PECAM1
ACACA
MAP2K3
TRIM8
EPM2A
PKM
NCOA2
BHLHE40
GFOD1
GPR35
RPS6KA1
RARB
KRI1
CDKN2D
FARSA
CALR
IPPK
FAR2
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
THAP11
NUTF2
CENPT
ADAM17
NIBAN3
SPAAR
NOL4L
S1PR2
IDH1
PRELID3B
HRH1
CNOT2
SYTL1
HPCAL1
BAZ1B
RHOF
NAMPT
MTHFR
CLCN6
SPATA1
GNG5
PDSS2
CYP2E1
SOAT2
IGFBP6
GPATCH8
RAP1GAP2
SLC25A19
CBFA2T3
BOLA3
GALNT9
SH2B1
CYB5R4
TOX2
JUND
RNF103-CHMP3
RMND5A
RNF149
DNAJB1
WT1
CYTH4
NRL
DCAF11
MYADM
MACC1
MYO18A
MAPK8
ZC3H4
ARID2
LYL1
BIN2
CDKN2AIP
UBE2R2
SH3BP2
SLC11A2
TCTEX1D4
BTBD19
RNASEH1
PIK3AP1
TAGLN2
ICAM3
GYPC
CD82
PA2G4
HES1
SPATA25
CTSA
NEURL2
CTBP2
ANXA11
TBL1XR1
CLDND2
NKG7
UPP1
OAZ1
VPS37C
RNF168
KRAS
ADGRG5
ADIPOR2
SDE2
TSPAN16
PHF19
ICAM5
ICAM4
ADPRHL1
AZIN1
TRIP10
GPR108
AP5B1
SLC4A2
CDK5
MIDN
BAG2
AP1B1
CCDC102A
BCL3
ZCCHC24
SMARCD2
PGLS
SLC25A35
NPBWR2
PTEN
KLLN
LOC114841035
FKBP2
PDCD4
DDX5
CEP95
SLC20A1
LIPA
BCAP29
MINDY2
ZC3H6
POM121
CYP4V2
GSPT1
QPRT
CENPH
RARA
ARSG
IGF2BP3
BCAT1
WDR12
CARF
MRPL2
KLC4
ZSWIM9
LIG1
FAM200B
SSBP4
LMBR1
ROM1
EML3
FMNL1
CNR2
FAM83E
SPHK2
RPL18
AP2S1
STING1
ACTL9
DHX35
ZNF114
PXYLP1
PIGO
ZNF335
RABL2B
RABL2A
RWDD1
PSMD1
MAPKAPK5
TAOK3
SUDS3
NME6
NUP85
CACTIN
POLR3F
DZANK1
FAM187A
EFTUD2
CCDC103
NVL
IPO13
DYNC1LI2
VDAC2
GOSR2
HSPA9
VTI1B
POLR2E
PSMG2
CEP76
NUP205
MRPS7
GGA3
HADHB
HADHA
RPL21
NCLN
EXOSC5
BCKDHA
TBCK
AIMP1
C19orf48
BLCAP
DCTN1
TSNAX
REXO1
SLC35B1
ATP5MG
STAM
TSN
STAM2
SEC61B
FARSB
PSMD12
LYRM4
FARS2
SRD5A1
NSUN2
PES1
PNO1
PAK1IP1
C6orf52
RBBP5
UPF2
SKP1
ZNF576
IRGQ
ZNF503
COX7A2L
CAPRIN1
SART3
ISCU
ACTR10
ZRANB2
GOLGA5
TTC8
DPH6
IQCG
SUPV3L1
VARS1
PI4KB
TMED1
RPL35A
RPS23
ATP6AP1L
RPS12
SMC2
MRPS5
ANAPC7
FAM104A
C17orf80
RABGGTB
SELENOF
HS2ST1
USP1
MRPL11
PDAP1
BUD31
PCBP1
EIF4ENIF1
UFM1
ADK
XPNPEP3
ST13
RPS27A
CLHC1
AP3M1
ICE1
APOM
BAG6
PROSER1
NHLRC3
WDR74
COMMD1
CCT4
SF3B3
COG4
OSGEP
APEX1
RPS29
PAF1
MED29
TM9SF1
NEUROG2
NFKBIL1
DDX39B
ATP6V1G2
LRR1
NEUROG3
PIN4
OR6B2
NDUFA10
PTGES2
OAZ3
SUCLG1
UBE2I
PDE12
HES3
ARHGAP11A-SCG5
ARHGAP11A
TAF9
RAD17
AK6
STK36
RNF25
MRTO4
EMC1
HOXA4
CDX2
VEZT
FGD6
FZD8
CYP26A1
SPATC1L
SEC11C
MAMDC2
RPL7
RDH10
EIF2S3
GADD45GIP1
BICRA
SYBU
CDC73
HOXA3
PMAIP1
ID2
C16orf91
ARHGAP10
RPN1
GORAB
TMEM107
NDUFS7
GTF3C4
DDX31
ZP4
DHRS3
NEUROG1
ATOH1
NEUROD1
CNPY2
DPP9
SP2
BNIP3
SEC22B
LEFTY2
ZNF383
BBS9
IGFBP2
LBX1
TPM1
TLE4
MRPL38
DNAJB7
TLE3
PHOX2B
SPCS1
GLT8D1
PDHX
APIP
TTI2
H2AW
HOXA2
ST18
TBX3
HOXA1
DUSP6
INSM1
CCDC33
LIN28A
METTL24
CDCA7L
PCBD2
TEPSIN
NDUFAF8
ERRFI1
FGF19
ADAM18
ANKLE2
DNM2
TPRA1
PCGF1
LBX2
NBAS
FOXP1
RUNX1T1
TBX2
HOXB3
ALKBH5
P4HB
MLEC
PRUNE2
FBXO31
HPD
CS
TMEM70
ELOC
DLL4
ANKRD28
SP5
RPS10-NUDT3
RPS10
AXDND1
PDHB
SMAD3
SYNPO
CLGN
DAPL1
DLX4
LPIN1
NPAS4
CAMTA1
ID3
TNFRSF19
ARHGEF28
MRPL34
PDE4D
ZFHX3
KIF21B
DOLPP1
DCTN3
TLE1
RAB5B
ARRDC4
RXRB
ANK2
PGK1
TMEM120B
ARID3C
DONSON
PHC2
XKR7
HSPA1B
HOXC4
ATF6
SLC39A7
MSX1
CCN1
NELFA
PRRX1
CBFA2T2
SMPDL3A
OTUD7B
KATNB1
RBPJ
PPP6R3
RPS24
POLR3A
KDM6B
LZTS1
PANK2
TRIB1
FRA10AC1
CCDC174
MYLK4
BAIAP2
SNX16
SQSTM1
TMEM101
CLCN3
ABHD2
POP5
GPCPD1
PDZRN3
NINJ2
GATA4
SIRT4
MFSD10
MTMR4
NR2F1
ABCC10
TOP2A
ID1
KCNAB2
KDM2B
ZNF687
ZNF367
SACM1L
USP17L20
PCGF2
NBPF1
ZFHX4
CCNL2
USP17L22
FOXP2
SRSF11
PSPN
ALKBH7
DYNLT1
HEXIM2
MIDEAS
FURIN
RFX1
LRRC40
ITGAV
ADAP1
POLDIP3
NUBP1
NFKBIA
PKDCC
STIP1
CNTN1
OSBP
EIF2AK3
PSMB3
ZFAND2A
TLE2
RASSF5
ZNF608
LRATD2
KNL1
IQSEC3
GADD45G
PSMD6
ATP5F1B
TRIM41
RNF207
NR2F6
AHDC1
RBBP7
HNRNPA2B1
CBX3
ABHD8
SLC45A4
HMGCS1
AGO1
KDM8
JUP
CSF3R
RHBDD1
NLK
POLG
SP1
MALRD1
ANKHD1-EIF4EBP3
ANKHD1
RTN4
PRDM10
GPC6
RAB11B
G3BP1
SEPTIN9
B4GAT1
LIG3
MYRIP
GLRX5
EVA1A
GRSF1
DSCAML1
DLC1
CRLS1
CCL26
SLC7A5
RBFOX2
TPCN1
TLE6
FAM107B
RGS12
TRAF7
HNRNPD
ARHGAP24
DDA1
FAM72C
CITED2
SHF
TMEM94
SPG7
GADD45A
TRIM46
MEIS2
PLEKHG2
METTL11B
DLG2
SOCS3
MTF2
FST
PKN2
CCDC43
PRMT5
KDM3A
ANTKMT
DAGLB
RGS3
BFSP1
EIF3D
ACYP1
LCK
FAM167B
NEK3
STAP2
SLC6A12
NCDN
KIAA0319L
FGR
ZBTB18
ZFP36
SLC30A4
PLEC
CYP51A1
ARAP1
CBX5
ABCA4
TLN1
CREB3
H3C12
H2BC17
H2AC17
SH3YL1
ACP1
MRPS28
ATP6V1E2
HOXC6
SERPINE1
RAB37
TCF7L2
GMEB2
FRMD3
UGP2
LTBR
HNMT
ADM
EIF4H
HMGB1
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
NKD1
CNKSR3
ARID5A
KMT2A
CAPNS2
BRMS1
TRDMT1
EVI5L
KIAA0319
CPT1A
ARHGEF10L
SMIM11B
SMIM11A
RHOQ
MRPS24
ILF2
GATD3B
GATD3A
CEP41
DNAJB3
CIC
SNCG
MMRN2
FAM72D
PRKACA
TDRKH
HOXB1
MBD2
SYNJ2
DIABLO
CMSS1
LNPEP
CACNA1D
CSRNP1
LIMA1
PLAGL1
IFI16
HOXC5
TXNRD1
RAC1
BAHCC1
PHETA1
LFNG
ARID4A
INAFM2
GTF3A
LUC7L2
DMBX1
PNKD
FAM72A
EVPL
SYTL3
HTR5A
KCTD7
IKBKB
ZNF76
UBE2F
ARL8A
ROGDI
MSX2
TUBB4B
MT2A
TRABD2B
CERK
ANKRD1
AIFM2
COMTD1
IQGAP2
SLC35A3
SORBS2
TIGD1
EIF4E2
LRP5L
INSM2
IL6R
USP42
DUSP9
NRM
C12orf73
NRSN2
TUBGCP3
CFL1
GSTP1
LAMP1
VOPP1
RNF34
CCDC88A
GOT1
ZNF77
NRXN1
CDK6
USPL1
LRIG1
UACA
NCOA7
SH2D6
H6PD
CR1L
NEDD9
KLHDC2
PAX6
TMEM60
PHTF2
HOXB4
RAI14
LMNA
PIKFYVE
IRF9
PIGV
USP3
CBX4
NRCAM
PRDM12
ZDHHC4
CHD8
EIF1B
CPSF4L
ZNF3
NCBP2AS2
NCBP2
RBM15
KLF6
CCL16
ZNF827
LRCH4
FBXO24
CRKL
NHLRC1
OPRM1
SEMA5B
TRAF4
TRIM7
TES
ORMDL3
ERI3
GPAA1
EXOSC4
PC
YTHDF2
NKX1-1
ANKS4B
STX16
NKIRAS1
TSPAN4
POLR2L
METRN
TF
MARCHF3
CLK1
INHBE
RXRA
CDC42EP3
TCHP
E4F1
SRSF2
MFSD11
POLR3E
ENO1
NFE2L1
PARK7
NANP
NEO1
TACC1
KPNA4
HSP90B1
POLR2J3
PCTP
UNC13D
PXMP4
FAAP24
CEP89
ANP32E
HECTD4
ATP2B2
MPND
ATG16L1
ZC2HC1C
TUBB
TTC30B
GPT2
C14orf93
UBE2C
RNF144A
SH3BP4
SULF1
KCNH7
MVD
ACVR1
DGKZ
TOMM40
IRS1
PACSIN2
PAQR8
GBA
BRWD1
UGT1A1
L1CAM
LASP1
DDX1
ZCWPW1
MEPCE
LMO4
GGT1
TRAF2
SNX1
CIAO2A
HNRNPC
ATP23
ATP5MC1
UBXN10
TBL1X
MPV17L2
CELSR3
TCF4
ETV4
TANK
ALDH4A1
PLEKHF2
CASC3