ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584311 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◣ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
RABL2B
RABL2A
POLR3F
DZANK1
PSMD1
RWDD1
IPO13
RPL21
MAPKAPK5
NUP85
DYNC1LI2
NME6
VTI1B
FAM187A
EFTUD2
CCDC103
FRG2C
TAOK3
SUDS3
VDAC2
HSPA9
CACTIN
NVL
DUX4
NUP205
PSMG2
CEP76
REXO1
SRD5A1
NSUN2
TBCK
AIMP1
C19orf48
MRPS7
GGA3
LYRM4
FARS2
HADHB
HADHA
STAM
TSNAX
ATP5MG
POLR2E
EXOSC5
BCKDHA
SLC35B1
GOSR2
UPF2
NCLN
SART3
ISCU
DCTN1
FARSB
BLCAP
PES1
ZNF503
STAM2
HOXA4
GOLGA5
ZNF576
IRGQ
NDUFA4
PNO1
SEC61B
DPH6
SKP1
TSN
USP1
RPS23
ATP6AP1L
PSMD12
ACTR10
TTC8
SMC2
ZRANB2
RBBP5
EIF4ENIF1
TMED1
PAK1IP1
C6orf52
UFM1
SUPV3L1
RABGGTB
COX7A2L
NFKBIL1
DDX39B
ATP6V1G2
CAPRIN1
FRG2
XPNPEP3
ST13
PI4KB
OSGEP
APEX1
IQCG
RPL35A
MRPL11
PCBP1
APOM
BAG6
ICE1
ANAPC7
MRPS5
BABAM2
RBKS
VARS1
RPS12
FAM104A
C17orf80
SF3B3
COG4
PDAP1
BUD31
NEUROG1
POU2F2
HES1
SELENOF
HS2ST1
ADK
AP3M1
PROSER1
NHLRC3
SEC22B
ABCG2
RPS27A
CLHC1
SEC11C
NEUROG2
HES3
UBE2I
RND3
FGF19
LRATD2
RPS29
LRR1
C16orf91
BICRA
PAF1
MED29
FZD8
RPL7
RDH10
OR6B2
NDUFA10
PDE6B
ARHGAP11A-SCG5
ARHGAP11A
MRTO4
EMC1
TM9SF1
TAF9
RAD17
AK6
MSX1
STK36
RNF25
NEUROD1
COMMD1
CCT4
TMEM120B
HOXA3
GNG12
PIN4
ANK2
SMPDL3A
DSCAML1
PTGES2
TLE1
LBX1
HOXB3
HOXB4
ZFHX4
PRDM13
SUCLG1
FGD3
KMT2A
SYNPO
HOXC5
CNPY2
NCOR2
TMEM70
ELOC
ZGPAT
ARFRP1
CCDC200
EIF2S3
MEIS2
ANKLE2
SLA
GTF3C4
DDX31
SPTBN1
SH3BP5
ARHGAP24
USP17L20
USP17L22
SPRR1A
PDE12
SEMA4D
CYP26A1
HMX2
TNP2
PRM3
PDHB
ALKBH5
OAZ3
TMEM107
BNIP3
PDHX
APIP
PCBD2
LIMK2
PDE1B
ERRFI1
NR2F1
GSX2
GDF10
TLE4
KCNK16
POP5
NFIB
GFRA1
SKIL
CS
DCTN3
ARID3C
C1orf105
GADD45GIP1
GALNT14
BBS9
DTX4
RBM39
TPO
RBBP7
VEZT
FGD6
HSPA1B
FOXP2
CCN1
USP17L11
USP17L21
USP17L12
USP17L18
SNCG
MMRN2
MYRF
MEF2C
GORAB
MYADM
KITLG
TRABD2B
FAM118A
AGMO
C10orf90
PDZRN3
DLG2
ID2
MTRNR2L1
WDR74
NEUROG3
RARB
MTRNR2L2
MSH3
DHFR
MTRNR2L8
CDX2
SOAT2
IGFBP6
SPATC1L
ARID3B
MAMDC2
SYBU
CDC73
NFE2
PMAIP1
RARA
IER3
FLOT1
ARHGAP10
RPN1
NDUFS7
ZP4
DHRS3
SH2B1
ATOH1
DPP9
SP2
KAT6B
ERCC1
LEFTY2
ZNF383
SPATA25
CTSA
IGFBP2
TPM1
TRIP10
GPR108
MRPL38
DNAJB7
TLE3
PHOX2B
NEURL2
SPCS1
GLT8D1
TTI2
H2AW
HOXA2
ST18
TBX3
ZNF746
HOXA1
DUSP6
INSM1
CCDC33
LIN28A
METTL24
CDCA7L
ASB2
TEPSIN
NDUFAF8
ADAM18
DNM2
TPRA1
PCGF1
LBX2
NBAS
FOXP1
COL23A1
RUNX1T1
TBX2
P4HB
MLEC
PRUNE2
FBXO31
HPD
MINDY2
DLL4
ANKRD28
SP5
RPS10-NUDT3
RPS10
AXDND1
SMAD3
CLGN
DAPL1
DLX4
LPIN1
HUS1
NPAS4
CAMTA1
ID3
TNFRSF19
ARHGEF28
MRPL34
PDE4D
ZFHX3
KIF21B
DOLPP1
STX18
RAB5B
KANSL3
FER1L5
ARRDC4
RXRB
PGK1
DONSON
UPF3A
PHC2
XKR7
HOXC4
ATF6
SLC39A7
NELFA
PRRX1
CBFA2T2
OTUD7B
KATNB1
RBPJ
PPP6R3
RPS24
POLR3A
KDM6B
LZTS1
PANK2
TRIB1
FRA10AC1
CCDC174
MYLK4
BAIAP2
SNX16
SQSTM1
TMEM101
CLCN3
ABHD2
BCL3
GPCPD1
NINJ2
SMARCD2
GATA4
SIRT4
RARG
MFSD10
MTMR4
ABCC10
TOP2A
ID1
KCNAB2
KDM2B
ZNF687
ZNF718
ZNF595
ZNF367
SACM1L
PCGF2
NBPF1
ARSG
CCNL2
NRL
MUC3A
SRSF11
MRPS31
QPRT
PSPN
ALKBH7
SMG6
CNOT2
DYNLT1
HEXIM2
MIDEAS
FURIN
RFX1
LRRC40
ITGAV
ADAP1
POLDIP3
NUBP1
NFKBIA
PKDCC
STIP1
CNTN1
OSBP
EIF2AK3
PSMB3
ZFAND2A
TLE2
RASSF5
RNF103-CHMP3
RMND5A
DCAF11
ZNF608
PPCDC
KNL1
PCNA
IQSEC3
GADD45G
PSMD6
SOD2
ATP5F1B
TRIM41
RNF207
PXYLP1
NR2F6
AHDC1
HNRNPA2B1
CBX3
KAZALD1
MDM2
ABHD8
SLC45A4
KMT5A
LPCAT3
HMGCS1
AGO1
KDM8
JUP
CSF3R
RHBDD1
NLK
SMIM20
POLG
SP1
MALRD1
ANKHD1-EIF4EBP3
ANKHD1
RTN4
FTL
PRDM10
NCOA2
GPC6
RAB11B
G3BP1
SEPTIN9
B4GAT1
LIG3
MYRIP
GLRX5
MACROH2A1
EVA1A
GRSF1
DLC1
CRLS1
CCL26
MBD6
DDIT3
SLC7A5
RBFOX2
TPCN1
TLE6
FAM107B
RGS12
TRAF7
HNRNPD
SREBF1
DDA1
FAM72C
CITED2
SHF
TMEM94
SPG7
GADD45A
TRIM46
PLEKHG2
METTL11B
MIDN
SOCS3
NOTCH2NLC
NOTCH2NLB
NOTCH2NLA
MTF2
FST
PKN2
CCDC43
PRMT5
KDM3A
ANTKMT
DAGLB
RGS3
BFSP1
EIF3D
INAVA
ACYP1
SSBP4
LCK
FAM167B
NEK3
STAP2
MYEOV
HPCAL1
SLC6A12
NCDN
KIAA0319L
FGR
ZBTB18
ARID2
ZFP36
SLC30A4
PLEC
CYP51A1
ARAP1
CBX5
STX1A
ABCA4
TLN1
CREB3
H3C12
H2BC17
H2AC17
COX5A
SH3YL1
ACP1
MRPS28
ATP6V1E2
HOXC6
ANKMY1
SERPINE1
RAB37
TCF7L2
GMEB2
FRMD3
UGP2
LTBR
HNMT
ADM
EIF4H
HMGB1
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
NKD1
CNKSR3
ARID5A
ARHGAP4
CAPNS2
BRMS1
TRDMT1
EVI5L
KIAA0319
CPT1A
ARHGEF10L
SMIM11B
SMIM11A
RHOQ
MRPS24
ILF2
RNF166
GATD3B
GATD3A
CEP41
DNAJB3
LAPTM5
CIC
FAM72D
CDS2
PRKACA
TDRKH
HOXB1
MBD2
SYNJ2
DIABLO
CMSS1
LNPEP
CACNA1D
CSRNP1
LIMA1
PLAGL1
IFI16
TXNRD1
RAC1
BAHCC1
PHETA1
LFNG
ARID4A
INAFM2
TXNDC11
GTF3A
LUC7L2
DMBX1
ZNF414
PNKD
FAM72A
SEC14L1
EVPL
SYTL3
HTR5A
KCTD7
IKBKB
ZNF76
WTAP
UBE2F
ARL8A
ROGDI
MSX2
TUBB4B
CXCR4
MT2A
CERK
ANKRD1
AIFM2
COMTD1
IQGAP2
SLC35A3
TCTEX1D4
BTBD19
SORBS2
TIGD1
EIF4E2
LRP5L
INSM2
IL6R
USP42
DUSP9
NRM
C12orf73
NRSN2
TUBGCP3
CFL1
GSTP1
RNPEPL1
LAMP1
VOPP1
RNF149
NR2C1
RNF34
CCDC88A
GOT1
ZNF77
CCDC88B
NRXN1
CDK6
USPL1
RASSF2
LRIG1
UACA
NCOA7
BHLHE40
SH2D6
H6PD
CR1L
NEDD9
EPM2A
SH3BP2
KLHDC2
PAX6
TMEM60
PHTF2
ING1
RAI14
LMNA
PIKFYVE
IRF9
PIGV
USP3
CBX4
NRCAM
PRDM12
ZDHHC4
CHD8
EIF1B
CPSF4L
ZNF3
KRI1
CDKN2D
NCBP2AS2
NCBP2
RBM15
KLF6
CCL16
ZNF827
LRCH4
FBXO24
CRKL
NHLRC1
OPRM1
SEMA5B
TRAF4
SLC25A19
SCAP
TRIM7
TES
ORMDL3
ERI3
GPAA1
EXOSC4
PC
YTHDF2
NKX1-1
ANKS4B
STX16
NKIRAS1
TSPAN4
POLR2L
METRN
TF
MARCHF3
CLK1
INHBE
RXRA
CDC42EP3
GFOD1
TCHP
ICAM1
E4F1
SRSF2
MFSD11
POLR3E
ENO1
NFE2L1
PARK7
NANP
CXXC5
CEBPE
NEO1
TACC1
KPNA4
HSP90B1
CYB5R4
POLR2J3
PCTP
UNC13D
PXMP4
FAAP24
CEP89
ANP32E
HECTD4
ATP2B2
MPND
ATG16L1
ZC2HC1C
TUBB
TTC30B
GPT2
C14orf93
UBE2C
RNF144A
CCDC114
SH3BP4
SULF1
SRCAP
LOC730183
KCNH7
MVD
ACVR1
DGKZ
TOMM40
MPC1
IRS1
PACSIN2
PAQR8
GBA
BRWD1
GPR35
UGT1A1
L1CAM
LASP1
DDX1
ZCWPW1
MEPCE
LMO4
GGT1
TRAF2
GPATCH8
SNX1
CIAO2A
HNRNPC
PKM
ATP23
ATP5MC1
UBXN10
TBL1X
MPV17L2
CELSR3
TCF4
ETV4
TANK
ALDH4A1
PLEKHF2
CASC3
CALM2
ABLIM3
ETFBKMT
CCDC107
HSPE1-MOB4
HSPE1
HSPD1
LYL1
TMC6
PRR14
STARD4
KMT2E
SCYL1
TMTC4
H4C12
HNRNPUL1
CBFA2T3
ADGRL2
FILIP1L
DUSP12
ARNTL
YARS1
S100PBP
PRAM1
SNX3
SDSL
RHBG
ZNF148
LRRC59
METTL25
CCDC59
ZCCHC3
STAT3
FMC1-LUC7L2
FMC1
IL6ST
SHC1
SHB
RFX8
CKS1B
TMPPE
RTBDN
GLB1
HIBADH
RAB17
PITPNM1
CAT
TMC8
TCERG1
MRS2
GSN
ELOVL6
PLEKHO2
RMDN3
LDLR
DNAJB1
SLC9A1
GRWD1
MAPKAPK3
KRT8
TMC7
LRRN4
PGP
BRICD5
ATP5MPL
KPNB1
FAM24A
CYCS
C8orf37
MAP1LC3B
MTRF1L
BCAR3
DBX1
PPFIBP2
CCDC38
AMDHD1
TMEM14A
DEAF1
BAZ1B
IGF2BP3
NRSN1
ERBB2
OPRL1
DCP1A
NRP1
SKA2
PRR11
SIRT1
ELF1
ARIH2
CMTR1
CATSPERG
KIF26A
ZNF740
CSAD
FARSA
CALR
GRK5
UPP1
TMEM59L
TBC1D8
FAM227B
DTWD1
CRLF1
SERPINB9
HSPA5
MSMO1
CPLX2
PCM1
WDR18
FAM228B
SLC25A51
MEF2D
PLEKHA6
RPS7
SHOX2
RSRC1
TYROBP
JUNB
CNPY3
CCNL1
WBP1L
ABCB1
PEX14
DFFA
JAK3
PANK4
HES5
NUF2
HOXD3
CDX1
RAB11A
STK38
SLX1B
SLX1A
BOLA2B
BOLA2
PAX8
MYLIP
DMD
URGCP
ANKRD39
FBXO41
SCNN1A
TOP2B
LSM2
FGG
BCAT2
TRIP4
INPP5D
UNK
CASD1
CLTC
RPS6KA1
ITGB2
FRAT2
DBP