ChIP-Atlas: Target genes

Potential target genes for SOX2

Query protein: SOX2
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX10035162 | KYSE-140
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
SOX2's Target genes

◢ SOX2: Average

◢ SRX130061: BJ

◢ SRX10407083: Esophageal squamous carcinoma cell line

◢ SRX10407084: Esophageal squamous carcinoma cell line

◢ SRX5286338: ES cells

◢ SRX5286339: ES cells

◢ SRX5286342: ES cells

◢ SRX5286343: ES cells

◢ SRX11904439: H29

◢ SRX11904440: H29

◢ SRX6852812: HCC2814

◢ SRX277137: HCC95

◢ SRX6852810: HCC95

◢ SRX3205373: Head and neck squamous cell carcinoma 

◢ SRX702105: hESC derived mesendodermal cells

◢ SRX702106: hESC derived mesendodermal cells

◢ SRX702108: hESC derived mesendodermal cells

◢ SRX1047416: hESC derived neural cells

◢ SRX11919277: hESC derived neuromesodermal cells

◢ SRX011616: hESC H1

◢ SRX1047413: hESC H9

◢ SRX277140: hESC H9

◢ SRX6101128: hESC H9

◢ SRX6101129: hESC H9

◢ SRX266860: hESC HUES64

◢ SRX266861: hESC HUES64

◢ SRX702107: hESC HUES64

◢ SRX702109: hESC HUES64

◢ SRX20532164: hESC HUES8

◢ SRX20532165: hESC HUES8

◢ SRX5286340: hESC WIBR2

◢ SRX5286341: hESC WIBR2

◢ SRX5286344: hESC WIBR2

◢ SRX10101684: hESC WIBR3

◢ SRX10101685: hESC WIBR3

◢ SRX8026053: hESC WIBR3

◢ SRX8026055: hESC WIBR3

◢ SRX968908: iPSC derived neural cells

◢ SRX968909: iPSC derived neural cells

◢ SRX968910: iPSC derived neural cells

◢ SRX968911: iPSC derived neural cells

◢ SRX968912: iPSC derived neural cells

◢ SRX1813586: iPS cells

◢ SRX1813587: iPS cells

◢ SRX20140858: iPS cells

◢ SRX20140859: iPS cells

◢ SRX512370: iPS cells

◢ SRX6852811: KNS-62

◣ SRX10035162: KYSE-140

◢ SRX10407085: KYSE-70

◢ SRX277131: KYSE-70

◢ SRX6852808: LK-2

◢ SRX6852813: LK-2

◢ SRX6852814: LK-2

◢ SRX026880: LN-229

◢ SRX359955: LoVo

◢ ERX2260038: Lung cancer

◢ ERX2260040: Lung cancer

◢ ERX2260044: Lung cancer

◢ ERX2260046: Lung cancer

◢ SRX2731713: Lung cancer cell line

◢ SRX6750797: MDA-MB-231

◢ SRX6750798: MDA-MB-231

◢ SRX1813580: MRC-5

◢ SRX1813581: MRC-5

◢ SRX1813582: MRC-5

◢ SRX1813583: MRC-5

◢ SRX1813584: MRC-5

◢ SRX1813585: MRC-5

◢ SRX2732210: MRC-5

◢ SRX2732211: MRC-5

◢ SRX5771664: N2102Ep

◢ SRX5771666: N2102Ep

◢ SRX5771668: N2102Ep

◢ SRX11904443: NCI-H1836

◢ SRX11904444: NCI-H1836

◢ SRX6852809: NCI-H520

◢ SRX11904441: NCI-H82

◢ SRX11904442: NCI-H82

◢ SRX10445285: Neural crest cells

◢ SRX10445293: Neural crest cells

◢ SRX10445303: Neural crest cells

◢ SRX10445312: Neural crest cells

◢ SRX20140860: Neural progenitor cells

◢ SRX20140861: Neural progenitor cells

◢ SRX20140862: Neural progenitor cells

◢ SRX20140890: Neural progenitor cells

◢ SRX20140891: Neural progenitor cells

◢ SRX20140892: Neural progenitor cells

◢ SRX5716451: Neural progenitor cells

◢ SRX5716452: Neural progenitor cells

◢ SRX5716453: Neural progenitor cells

◢ SRX330107: ReN-VM

◢ SRX330108: ReN-VM

◢ SRX277134: T.T

◢ SRX3367070: TE-5

◢ SOX2: STRING

ECT2
SMCO1
STK31
LYPD5
MCCC1
CTNNA1
LRRTM2
SHROOM1
MTF2
SPATA16
NRCAM
ZNF80
CPT1A
LTBP2
PPT1
NDUFB5
MRPL47
SUN1
HOXA9
ETV1
SMCO2
PRR15
NT5C3A
NAV2
GRK6
LMO3
HDAC9
TNFAIP2
NEBL
SH3BP4
OR13C2
PACSIN2
CYP2S1
NTN5
YEATS2
KLHL24
LMCD1
ANKUB1
CYTH2
PYCR2
NAALADL2
IFRD1
HMGB1
KIF6
LYPLAL1
COL4A2
COL4A1
OR7C1
OR7A5
PROSER2
PER2
CDC42EP3
RAB23
LIMK2
FGD3
MED25
FUZ
CCL26
CYP21A2
INHBA
XXYLT1
MANSC1
ARHGEF7
KRTAP3-1
CNP
OR7A10
PSME2
EMC9
RNF31
RXFP1
HES1
ODC1
ABLIM1
LTF
C1GALT1
LNX1
VWCE
SEMA3D
MAD1L1
RIIAD1
CELF3
DGLUCY
PDPN
HGS
ARL16
MUC13
ZNF428
PXMP4
LFNG
FAM120B
FAM220A
DYRK1B
HAUS6
RAPGEF5
ST6GALNAC2
MAP1B
ARID2
IFT80
SMC4
TNRC18
LOC100129484
SLC33A1
CLDN10
UFD1
CDC45
ANKRD13D
CLEC4F
CYB5R2
MATR3
POLR2M
ZNF57
PHF5A
ACO2
MAST4
PDIA4
TMCC1
NINJ2
PLEKHG1
KMT2B
MUC1
PRXL2A
STMN1
FXR1
MARCKS
NADSYN1
FAM126A
CLRN1
ZNF148
MMP10
FKBP9
TOMM40
GCNT2
PKP2
ZFR
PTMA
PCID2
CUL4A
SPRY4
ETV4
IL7R
KRT13
LGSN
FBXO27
LYRM1
DCUN1D3
LPIN1
RFC4
MTHFD1L
ZSCAN2
MEOX1
OGA
MYEOV
C3orf20
NME4
SAXO1
RRAGA
F11R
AHNAK2
LECT2
POLDIP3
TAB2
ABCC1
TEAD4
PALMD
RABGAP1L
SLC25A11
RNF167
DDX17
PSMD5
TIGD6
HMGXB3
FBXL19
PIF1
RNF152
LIFR
TIAF1
WDR36
CAPNS2
DST
C1QTNF7
FAM227A
CBY1
RCOR1
AGR2
PTBP2
JUP
MIDN
MAP3K5
DACT2
KLHL6
LAMP1
DAGLB
TBC1D17
AKT1S1
CHST12
FNIP2
LAMTOR4
PRDM14
SYT2
TMEM63C
ABCC10
KIAA0930
LGALS9C
EXOC6
KBTBD2
SORT1
CALR3
C19orf44
SOCS3
PHACTR2
PAM
SYNE2
RFLNA
JMJD7-PLA2G4B
JMJD7
PRORP
PPP2R3C
NIBAN2
DOCK9
CLDN4
WASF1
CDC40
PSPH
CCT6A
PLS1
ZNF775
CD2BP2
NRARP
SYNCRIP
TMCC2
KCNJ15
PTCD2
MRPS27
SVIL
WARS2
KIAA0040
CTSH
FAM133B
PPP1R3G
TUBA1C
CLUAP1
CHI3L2
CDH13
HNRNPA0
CA6
FLG
DLX5
GLI3
PER1
DMRT3
ESRP1
IQCH
AAGAB
PIK3R3
KRT6A
TMUB2
E2F1
TENM3
HERPUD2
VPREB3
ZNF70
PLPP2
CCDC171
OAZ2
CP
HAO2
STEAP1B
PLD1
CYP1A1
SLC4A7
HSPB3
ARHGAP5
OIT3
UNC13B
PSME3IP1
H2AZ2
PPARG
NOX4
CORO1C
GPNMB
YWHAG
WDR54
C2orf81
SIX2
PGRMC2
RPA3
GET3
TLN2
FGF19
OR10S1
ITPRIP
SINHCAF
ID1
MEF2C
SETX
ISLR2
HEBP2
TTC39B
TUBB
MDC1
STAG3
GPC2
PPME1
C2CD3
NOTCH1
MTUS1
GTF3C3
NKIRAS1
KRTAP19-2
KRTAP19-1
NR1D2
ARHGDIB
SHISA7
SOX2
FMNL3
NDE1
MARF1
VGF
ZBTB20
MT1B
SNAPC3
NWD1
RPL15
MOSPD3
PLA1A
DIABLO
GSN
TSPAN13
TRMT2A
RANBP1
PLEKHG3
DKK3
ONECUT2
FBXO48
APLF
KRT8
GOLIM4
RIPK1
PLA2G6
BAZ2A
POLB
SHC3
KCNMB2
FOXJ3
CSTA
C15orf62
HSD3B1
PPP1R42
UNK
H3-3B
SLC16A13
TLX3
METRN
DTD2
RAB40B
KNTC1
CALHM4
DCSTAMP
FAM91A1
PRKCI
GPR42
GMCL2
KDM2A
NDST1
GPSM3
MTMR1
LGALS8
RINT1
RNF13
FZR1
CEP63
ANAPC13
SPAST
SLC25A36
CRISPLD1
CAST
UPF1
CUEDC1
LY6G6F-LY6G6D
LY6G6F
ABHD16A
CSTB
KIAA0895L
IPO11
EXOSC2
PRKAB2
PHKB
ITFG1
BTF3
HACD3
ZFHX3
SPHK1
LOC100505841
AMER3
DDR1
ZBTB40
EGFR
COPS7A
KRT23
COL17A1
VIT
OR2H2
ABL2
HSPH1
FRAT1
SLC14A2
ZSWIM4
RADIL
NFKBIA
PLAGL1
ZNF304
NUAK1
CNKSR3
DDX59
ATXN7L2
CRIP2
TJP2
NPIPB5
METTL11B
GREB1
ICE1
RASAL2
EFCAB12
NPIPA3
NPIPA2
C1QL3
MYMK
NUP160
VOPP1
SPPL2B
LSM7
ETF1
ROCK2
ZNF608
TMEM205
CCDC159
RAB3D
NOL6
FZD1
ANAPC15
GSTO1
HBP1
RIOX1
CBLC
EDN1
APELA
CXCL13
HEXIM2
PTP4A1
PAAF1
GOLGB1
FAM155A
DNASE1L2
SOSTDC1
C7
GIMAP5
GADD45G
ETV6
STK32C
LRRC27
GDF5
CEP250
CCDC116
FOXN2
GADD45A
KLHL13
PTER
BAHCC1
CTNNAL1
TMEM221
NPIPB12
CLIP4
FAIM2
RBFOX2
VPS37B
ITGB4
GTPBP6
RAB4B
MIA
MCM7
AP4M1
NEMF
FRY
NME7
BLZF1
ADH7
UMAD1
RNF41
NABP2
CAV1
IL1F10
SEL1L3
CCDC130
NME1-NME2
NME1
MTHFD1
DHX8
RHOBTB2
GBP6
FBXO17
CDC5L
SRP68
ITGB1
MAP3K9
DNM1L
COX8C
SMUG1
LRRC34
GRAMD1C
ANAPC10
ABCE1
NSUN3
DHFR2
NPIPB8
PIPOX
TES
ITPK1
AKAP9
RNF20
GTF2H4
ZWINT
RFC5
DCUN1D1
STARD7
MEGF8
CSRNP2
ARHGEF19
DNAH5
CNOT11
RAB30
PAN2
IL23A
TNFAIP8
CERS3
ESRRA
CATSPERZ
RARB
SEL1L
SH3PXD2A
MYLK
PIN4
NASP
CHMP4B
MCM10
SERPINB13
TEX101
EXOC5
AP5M1
MAP3K20
ITGBL1
EIF3B
PACRGL
ERV3-1-ZNF117
ERV3-1
SLC45A4
KRT15
SLC25A47
NPIPA5
SLC20A2
ARID5B
TEN1
ACOX1
LRRC25
LMNA
CDK12
NPM3
EFNB2
BTC
EMSY
YLPM1
SYBU
BZW2
DHRS7
ANKMY2
GET4
PIGX
CEP19
DDX3X
CFAP20
ARSG
TRPV4
FOXK1
RSF1
AAMDC
DNAH2
CMYA5
BRD4
DUSP6
SFPQ
H3C6
MED9
AKNA
NPFFR1
FZD2
RPL27
EXOSC5
BCKDHA
ELL
DOCK5
TTC6
FOXA1
GBP5
ISL2
DNAJB1
SLAIN1
C12orf73
TECR
MRPL21
IGHMBP2
GDPD5
HNRNPDL
ENOPH1
GNA12
BAZ1B
NPIPB13
ZNF335
DNM2
HROB
ELAPOR1
C1orf194
MBNL1
ZIC2
USP13
ITPKB
DNAJC19
UBAP1L
EP300
DMWD
MMACHC
CCDC163
TTF2
CD36
LRRN1
ZFC3H1
THAP2
ERGIC2
H4C15
H4C14
PWWP2A
ACBD7
ID4
NSUN6
ARL5B
TMPRSS4
USP48
ZFP69B
ENTPD7
NUPR1
OR52K1
WDR74
FREM1
OPHN1
DISC1
CLOCK
SFT2D2
PIK3C2G
PELO
ITGA1
WDFY2
VANGL2
TSPAN14
ERMN
HNRNPC
KXD1
TFB1M
SNAP23
TMEM107
ZNF106
SLC2A4
RAPGEFL1
CAV2
PTPN3
ADO
PLS3
MESP2
ADNP
ASF1A
PNRC2
VDAC2
NPIPB11
PIMREG
ZDHHC5
MNT
ZNF92
JUN
TDGF1
HACL1
BTD
HEXIM1
SLC2A3
PFKFB3
NPIPB3
SLC6A6
KCNIP4
RAP1A
TPM1
POU2F1
ANXA11
EIF4H
TDP1
RIMBP3C
RIMBP3B
SLC3A2
PDE4B
TRAM1
CTXN3
FBXO32
RXRG
CLN3
APOBR
CASD1
KIF25
SLC7A5
G3BP1
UBQLN4
LAMTOR2
ETFB
SFXN1
XAB2
PCP2
MAPRE2
ZNF37A
CNIH4
FIGNL1
PUM1
ZNF124
FAM83B
KALRN
PEAK1
HMG20A
ADRM1
HLA-DOB
NPIPB15
UBTD2
ZNF710
GPAA1
EXOSC4
SNAI2
CNIH1
BHLHE40
COL2A1
SAPCD2
UAP1L1
COMT
CMC2
RPL22L1
CCT2
CMSS1
MSLN
RAP2B
PTGER4
C9
ZSCAN9
SH3GL3
GABPB2
PCCA
PRMT5
TAGAP
SMC5
WDR82
PITPNM3
UBR2
USO1
NPIPB4
DISP3
FSCN1
SSR4
IDH3G
HACD2
GPER1
PHLDB2
NSA2
GFM2
HLTF
TNPO1
EMP1
ZMAT1
SERPINB8
STAT6
ZFP36L1
CCAR1
XKR6
FBXO33
TIAL1
PLCH1
MRPL34
DDA1
NEK8
CUBN
FAM76B
CEP57
CREM
ABCA13
ANKRD22
WBP1L
ZBTB8OS
RBBP4
ZNF250
ARNTL2
LIMCH1
RBM41
UBL7
INTS4
PPP6R3
G2E3
KMT2D
ZFAND3
BAIAP2
MAD2L1BP
GTPBP2
PKD1L2
SMG5
FADS2
HACE1
FADS1
VHLL
GLMP
SFR1
AQP5
SHMT2
IL12B
TAF1A
PMVK
RPS29
KRT80
PRPF40B
ST18
TMX2
MED19
H2BC8
H2AC8
ALKBH5
TMEM101
NPIPB6
MRPS22
CELSR3
PRCC
TMEM260
KLRK1
ARHGAP42
ZNF180
DENND4A
KHDRBS1
FOSB
CMTM4
TPCN1
GOLGA5
RPL5
NFX1
AP2B1
HECW1
RBMX
RAET1L
WDR83OS
WDR83
MAN2B1
AMN1
CEP41
KLF6
CTTNBP2NL
ERCC6L2
ATP2C1
SAR1B
GPR84
ANKS6
H1-2
GPR146
PCF11
STEAP1
SERPINF1
TCOF1
CUL2
ATOH7
AEBP2
ZNF195
TSNAXIP1
RANBP10
MTDH
SYNRG
TUBB4B
CD248
NCOA1
PXDC1
SLC25A25
SLC9A9
MS4A2
BRMS1L
GGT1
TSC1
GFI1B
KLF12
DNA2
SDHAF3
BFSP1
SPTLC2
ATAD2
KMT5C
FEM1A
RTRAF
MALT1
NTN4
RGS22
ACSL6
BTG1
SIPA1L1
PIK3CA
PTHLH
PNN
NAA40
TRAPPC6B
TMEM52
CALML6
KLHL7
ZNF627
RNF217
PRRC2A
AIF1
EPHX4
NECTIN3
CAMSAP2
SCNN1A
LTBR
TFDP2
RAPGEF2
PGM2L1
IGF2BP3
ATXN7L1
ZNF680
CDC42
NDUFS5
TRIB1
CELA3B
NCLN
CIC
ARL2BP
ACTRT3
MYNN
HES4
CDH8
OR52W1
TLE3
ZBTB2
RAI14
RFFL
GNAL
TFAP2A
NEDD9
FOXP2
PBXIP1
MICAL2
QTRT2
CCDC191
SLC25A45
FRMD8
OSCP1
GPR3
NPIPB9
LRRC17
NARF
PIM1
INTS9
HMBOX1
GAS1
SH3PXD2B
DSTYK
GSDMA
CAPN2
ADGRF4
RAD52
NOL12
ZBTB4
SLC35G6
POLR2A
SDCCAG8
CEP170
BCL2L11
RSPRY1
COX8A
UBE2T
TMEM170B
ACSL1
SUFU
ACTR1A
FJX1
IGSF9
PPIL3
NIF3L1
SLC31A2
HOXA3
RCN3
HOXA6
HOXA5
CAPRIN1
CACNA2D1
PTX3
RCC2
RIPOR2
KIAA1671
SSBP1
PPP6R1