ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX21236745 | IMR-32
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◣ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

FAM187A
EFTUD2
CCDC103
RWDD1
NUP85
GOSR2
MRPS7
MIF4GD
GGA3
TAOK3
SUDS3
HADHB
HADHA
NVL
RABL2A
PSMD12
RABL2B
ZNF335
POLR3F
DZANK1
SLC35B1
RBBP5
MAPKAPK5
CACTIN
NNAT
BLCAP
TSN
TSNAX
RPS12
POLR2E
GPX4
NME6
ZRANB2
PSMD1
VDAC2
NUP205
USP29
VTI1B
PNO1
LOC102724770
DGCR6
PAK1IP1
C6orf52
S1PR4
NCLN
STAM
RABGGTB
VARS1
RPL21
EXOSC5
BCKDHA
LYRM4
FARS2
COX7A2L
SART3
ISCU
REXO1
OAZ3
HSPA9
DCTN1
RPS23
ATP6AP1L
FAM104A
C17orf80
ANAPC7
SEC61B
TTC8
PI4KB
PSMG2
CEP76
C19orf48
UPF2
DUX4
RPS27A
CLHC1
TBCK
AIMP1
CAPRIN1
DNAJB7
XPNPEP3
ST13
DYNC1LI2
MAMDC2
SUPV3L1
DPH6
RPL35A
IQCG
LMLN
ZNF576
IRGQ
C6orf47
APOM
BAG6
UFM1
PES1
SELENOF
HS2ST1
MRPS5
HSPA1B
COMMD1
CCT4
STAM2
SMC2
ACTR10
ATP5MG
PAF1
MED29
ETAA1
NDUFA4
FARSB
SRD5A1
NSUN2
IPO13
GOLGA5
PCBP1
MRPL11
TMEM101
PROSER1
NHLRC3
SUCLG1
TMED1
USP1
RPN1
SKP1
SFI1
EIF4ENIF1
RPS29
LRR1
ATP6V1G3
NFKBIL1
DDX39B
ATP6V1G2
CRYBG3
CDC73
GMEB2
ICE1
ADK
AP3M1
UNKL
C16orf91
OR6B2
NDUFA10
PDAP1
BUD31
PIN4
GORAB
RBKS
BABAM2
TM9SF1
IPO4
TSSK4
SLC35A3
UBE2I
MMD
NRXN1
PIP4P1
OSGEP
APEX1
GTF3C4
DDX31
TAF9
RAD17
AK6
RPS10-NUDT3
RPS10
DUSP12
WDR74
STX5
SF3B3
COG4
MLEC
MRTO4
EMC1
STK36
RNF25
GADD45GIP1
BICRA
CDON
SEC11C
MYCN
SRSF11
LRRC40
PCGF3
TRIM65
MRPL38
PCGF1
LBX2
TLX2
AXDND1
MTRNR2L8
UBAP2
KIF3B
ARHGAP11A-SCG5
ARHGAP11A
ANO3
METTL24
GAMT
IFI44
LIMA1
PTGES2
RPL7
RDH10
ZBTB18
BDNF
XXYLT1
RUNX1T1
NPTN
APBA1
BAHCC1
CNPY2
ATP1A1
PRRT2
PAGR1
MVP
PLSCR5
WRAP53
TP53
CCDC43
SUN1
NFATC4
RPS24
POLR3A
CSRNP3
PKN2
GBA
KREMEN1
SNRPD2
QPCTL
F7
CDH2
YTHDF2
CBX5
EIF2S3
ZNF585B
ZNF383
RFX8
EIF4H
CD79A
ARHGEF1
KIAA0319
CHD8
DHX8
TLE4
TLE6
LAYN
PHOX2B
CBFA2T2
CHN1
ANK3
ALKBH5
RPL36
MICOS13
HSD11B1L
NELFA
TIAM2
LRCOL1
P2RX2
CDH7
TLE3
CCDC200
IGFBPL1
RABGAP1L
EGFLAM
EAPP
NBEA
MAB21L1
HSPE1-MOB4
HSPE1
HSPD1
SPCS1
GLT8D1
KAT7
EYS
DLC1
CDK15
MYLIP
GK2
MGARP
DBNDD1
CERK
AFF3
TOMM20
AKNAD1
CS
SSH1
SLC17A6
HEPACAM2
VPS50
PDHX
APIP
SMLR1
MAST1
RTBDN
PTPRO
TANC1
NAV2
CAPRIN2
OPRM1
RRM2
NRP1
ADCYAP1
GGA1
MAN2C1
HUS1
KIAA1549
FAM162A
CCDC58
DYRK1B
IZUMO1R
RNASEK
ALOX12
RBM25
LRRC43
IL31
RARA
NHLH2
FOXP2
H3Y2
TSHR
IDI1
MGP
ZNF217
TBC1D16
CCDC40
SPATA4
KDM3A
RARB
BAZ2B
GRK5
FRMD6
SERTAD3
CTDSP1
CLTC
HSD17B1
COASY
DENND1B
ANKLE2
TNFRSF19
CAPNS2
MUC17
LY75-CD302
LY75
CACHD1
DDX1
DNASE1L2
ECI1
WDR7
DACT1
SH2B1
ACOT11
AQP6
HNRNPA2B1
CBX3
SYBU
FGD4
ACVR1C
FRZB
FRG2C
PPP1R35
ZCWPW1
MEPCE
CMTR1
DOCK10
GRIP1
MTMR14
COL23A1
MUC3A
HECTD3
LRATD1
ONECUT3
CEP120
NEUROD1
KRTAP3-2
KRTAP3-3
KRT40
LRRC56
HRAS
ZNF608
ARL17B
PRDM10
LIG3
GATAD2A
SLC26A1
IDUA
SATB1
OMD
SLC35E3
TRIM2
MTRNR2L1
PHRF1
SEBOX
VTN
SARM1
PIH1D1
ALDH16A1
RNF34
MLF2
EML2
TIMM10
SMTNL1
PRADC1
CCT7
ZSWIM1
SPATA25
NEURL2
CTSA
DGKZ
RAD23A
CALR
FARSA
UQCRC2
GULP1
BAIAP2
PELI2
C8orf48
TCHP
PARP16
B3GNT3
TCP1
MRPL18
C1orf185
CLASP2
CDYL
BMF
TMEM60
PHTF2
PTPN6
C12orf57
ABCA12
FLRT3
NRG1
TRIM67
TBPL1
ELAVL4
PFKP
MDM1
RAD52
ZNF444
TMEM107
TCF4
STAT3
NEFH
SEMA6D
SLC25A25
NAIF1
ZBED9
CIPC
SOAT2
IGFBP6
BRWD1
NAP1L1
PDE6B
MBD6
DDIT3
ACVR1
MAD2L2
R3HCC1
DRAXIN
EBF3
FAM43A
MTRNR2L2
MSH3
DHFR
RUNDC3A
SIRT4
PARP2
CCNB1IP1
SMAD5
C9orf92
SMIM41
ATG101
THBS4
MTX3
MMP20
LDLRAD4
PHB
EFNB1
DVL3
PAXBP1
NOP14
GRK4
ARL4D
TLN1
CREB3
SLC22A15
ZNF331
HTR1F
JDP2
SCHIP1
CYTH3
ITPR2
H4C14
H3C15
H3C14
H4C15
BRD4
RAB30
RAB27B
GTF3A
PHIP
PKIA
PRKCSH
CCDC151
ATF7IP
RTP5
SLC6A2
RFTN1
ZNF503
FRG2
NEUROG2
ZGPAT
ARFRP1
PPP1R1B
NEUROG3
HES1
HOXA3
ARF1
PDE12
ICMT
HES3
HOXA4
WNT1
HOXA1
ID1
DUSP29
CDX2
NOTCH2NLC
SKIL
MBTPS1
DHRS3
LARP7
GLRA1
SP2
ARID3B
VEZT
FGD6
SNAPC1
FZD8
CYP26A1
NOTCH2
SPATC1L
ID2
ARHGAP10
NR2F1
PLAGL1
NFE2
G6PC2
PMAIP1
CCDC33
IER3
FLOT1
HOXA2
PALM2AKAP2
PDE4DIP
DUSP6
MUC20
H2BU1
H2AW
ZNF775
NDUFS7
ZP4
SERINC5
KCNN4
NEUROG1
ATOH1
RAB11FIP1
DPP9
IGFBP2
LZTS1
KAT6B
BNIP3
TBL2
ZFHX4
SEC22B
TPM1
ERCC1
GPR108
LEFTY2
BBS9
BHLHE40
LBX1
TRIP10
CDH18
DDAH1
FOXP1
ERRFI1
VSIR
HOXB1
NBAS
TTI2
ARHGDIA
ST18
LIN28A
TBX3
HOXA5
INSM1
P4HB
TLE2
ZNF746
ETS1
PHC2
CDCA7L
ASB2
PCBD2
FAM222A
TEPSIN
NDUFAF8
LPIN1
NBEAL2
CCDC12
ARHGAP24
FGF19
ADAM18
DAPL1
DNM2
TPRA1
PAH
ARID3C
TBX2
NCOA7
NHS
TAF12
CITED2
HOXB3
RHBDD3
EWSR1
S100A10
SLC39A7
RXRB
HSD17B8
ADNP2
DLL4
PPP6R3
HOXC4
CRYAA2
CRYAA
SP1
PRUNE2
FBXO31
URM1
SYTL3
HPD
MINDY2
SP5
FILIP1L
EXOC2
MAP1LC3B
TMEM70
ELOC
DCTN3
H2BC17
H2AC17
CCN1
ANKRD28
UNCX
FRA10AC1
COL11A2
SYNPO
SMAD3
HPCAL1
PDHB
CNTN1
ANK2
NFIA
ZFHX3
KIF21B
PKDCC
CLGN
BAZ2A
ARSG
RPL22
RNF207
FXYD2
XKR7
DLX4
FABP7
STX18
NPAS4
E4F1
CAMTA1
RAB5B
PMEL
CDK2
PPFIBP2
ID3
ITGB6
CHN2
STAP2
CRABP2
TLE1
ARHGEF28
TMEM242
MRPL34
DDA1
ABHD8
HOXC6
PDE4D
CPVL
DOLPP1
OTUD7B
KDM6B
ASB6
KANSL3
FER1L5
ARRDC4
KDM2B
GPC6
PGK1
TMEM120B
SEPTIN9
DONSON
ABLIM3
VIP
UPF3A
DYNLT1
ATP5F1B
MAB21L2
POR
ATF6
FRYL
MSX1
CERCAM
SMPDL3A
POP5
JUP
PDZRN3
SH3BP2
ARHGAP22
PRRX1
CADM3
PC
EXOSC4
KATNB1
RBPJ
KCNAB2
BCL3
MRPL20
MYLK4
PANK2
PPCDC
TRIB1
NINJ2
MEIS2
RARG
PTK2B
CCDC174
IRF2BP2
FAM72C
RHBDD1
SNX16
SQSTM1
CLCN3
CCNL2
MBNL3
ABHD2
SREBF1
GPCPD1
QPRT
ADAP1
RING1
SMARCD2
GATA4
NOTCH2NLB
NOTCH2NLA
MFSD10
MTMR4
MALRD1
PRKAG2
MIDEAS
ELOVL5
TOP2A
ABCC10
HEXIM2
TMEM9
SLX1B
SLX1A
LFNG
BOLA2B
BOLA2
ZNF687
SMG6
ZNF718
ZNF595
NBPF1
ZNF367
ZFP36
PLEKHG2
SACM1L
USP17L21
USP17L20
USP17L12
PSMB3
PCGF2
SLC2A9
CNOT2
TRIM46
KRTCAP2
RASSF5
NRL
NOL4L
CALM2
USP17L22
FURIN
MRPL3
SPG7
HSPA1L
HSPA1A
PCNA
MRPS31
EIF1B
INHBE
GLI1
ANGPTL4
PSPN
ALKBH7
DACT2
RPL34
ECEL1
ASXL3
PPP1R18
NRM
SMIM28
RFX1
SOCS3
KAZALD1
ITGAV
ARHGAP30
THOP1
SGTA
POLDIP3
NUBP1
HNMT
NFKBIA
RHOQ
ATP6V1E2
TRAF7
EIF2AK3
FAM72D
ZFAND2A
STIP1
NAV3
OSBP
SHC1
GRIK2
STAT1
RNF103-CHMP3
RMND5A
RPS7
ASCL1
DNAH1
IL17RD
ZNF77
SKI
ZNF740
DCAF11
CSAD
SHF
TRIM7
ATP1B1
MYBPC3
PSMD6
LRATD2
RAB26
SSBP4
RPLP1
STARD13
TRIM26
CLDN11
HAND1
KNL1
ARRDC2
CDS2
IQSEC3
GADD45G
SEPTIN4
GPR20
ZC3H3
SOD2
TRIM41
SERPINE1
ME3
ACYP1
PXYLP1
NR2F6
AHDC1
BRMS1
RBBP7
GADD45A
MDM2
GOT1
ECE1
HOXB4
SLC45A4
CCL26
RAB37
KMT5A
BORCS6
LPCAT3
HMGCS1
AGO1
IKBKB
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
CAPG
KDM8
TNFAIP2
SLC34A3
ZNF285
RGS3
CSF3R
DLG2
TCP10L
SPRED2
NLK
EMP3
SMIM20
TRIB3
POLG
TPCN1
ZNF564
CBX4
RGS12
LMOD1
ANKHD1-EIF4EBP3
ANKHD1
STX1A
RTN4
FTL
PDP2
LMO4
NCOA2
ART1
TCTEX1D4
PLK3
BTBD19
RAB11B
G3BP1
SOCS2
ADM
SCGB1A1
COL21A1
B4GAT1
MYRIP
GLRX5
MACROH2A1
EVA1A
SLC35E2B
GRSF1
SH2D6
ZNF827
DSCAML1
CRLS1
SLC7A5
ZC2HC1C
RBFOX2
NEK1
TCF7L2
METRN
FAM107B
HNRNPD
SYNJ2
MYEOV
KBTBD11
MNT
MSX2
CORO1A
HOXD3
ELL
TMEM94
BFSP1
MOB3A
IZUMO4
RBM15
NHLRC1
PNKD
METTL11B
MIDN
ARHGEF3
IFI16
JUNB
CNPY3
METTL3
MTF2
FST
SIT1
PRMT5
ANTKMT
CNKSR3
DAGLB
UBE2F
PLA2G2A
CTSW
EIF3D
WSB2