ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584303 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◣ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
RABL2B
RABL2A
PSMD1
DUSP29
RWDD1
IPO13
MAPKAPK5
NME6
POLR3F
DZANK1
CACTIN
TAOK3
SUDS3
ZP4
PSMG2
CEP76
NUP85
VDAC2
FAM187A
EFTUD2
CCDC103
GRSF1
HSPA9
NVL
DYNC1LI2
ZNF503
MBTPS1
SP5
POLR2E
GPX4
C19orf48
RPL21
TLE6
PMAIP1
ATP5MG
REXO1
STAM
STAM2
TBCK
AIMP1
TSN
VTI1B
GOSR2
NUP205
LEFTY2
MRPS7
MIF4GD
GGA3
EXOSC5
BCKDHA
CAPRIN1
DCTN1
SEC61B
NDUFA4
NNAT
BLCAP
PES1
PAK1IP1
C6orf52
UPF2
PNO1
ZNF576
IRGQ
S1PR4
NCLN
SKP1
NEUROG2
FARSB
SLC35B1
LOC102724770
DGCR6
RBBP5
ACTR10
TSNAX
DPH6
GOLGA5
ARHGAP10
SRD5A1
NSUN2
SELENOF
HS2ST1
HADHB
HADHA
UBE2I
LYRM4
FARS2
TMED1
RPS12
PROSER1
NHLRC3
RBKS
BABAM2
PHOX2B
TTC8
VARS1
ICE1
PSMD12
PCBP1
MRPL11
RPS23
ATP6AP1L
SMC2
MRPS5
SPECC1
USP1
COX7A2L
ANAPC7
ZRANB2
FAM104A
C17orf80
SART3
ISCU
SFI1
EIF4ENIF1
PI4KB
HSPA1B
ICMT
HES3
PALM2AKAP2
RPL35A
IQCG
LMLN
SUPV3L1
DUX4
RABGGTB
ADK
AP3M1
PDAP1
BUD31
UFM1
PAF1
MED29
CNTN1
C6orf47
APOM
BAG6
MUC12
CHRND
PRSS56
TM9SF1
IPO4
TSSK4
SF3B3
COG4
PAX6
DNAJB7
XPNPEP3
ST13
NKD1
PTGES2
PRRX1
PIP4P1
OSGEP
APEX1
COMMD1
CCT4
PIN4
FRG2C
PDZD2
RPS27A
CLHC1
NHS
FOXB1
NFKBIL1
DDX39B
ATP6V1G2
STK36
RNF25
IRX5
NR2F1
LZTS1
GRIP1
NEUROG1
NEUROG3
BICRA
RPS29
LRR1
UNC5A
TCF7L2
MSX1
OR6B2
NDUFA10
SUCLG1
EOLA2
EOLA1
CBFA2T2
ZNF608
IGFBP2
OR2L13
OR2AJ1
GLRA1
EIF2S3
SMC6
GEN1
ANKLE2
FOXA2
KLF17
TAF9
RAD17
AK6
PPP1R1B
SLC39A7
RXRB
HSD17B8
COL11A2
RING1
POU3F2
OAZ3
ECEL1
PDE6B
ZSWIM6
SLAMF8
PDHX
APIP
SEC11C
OTX1
ARHGAP11A-SCG5
ARHGAP11A
CDH18
CDX2
SERINC5
CERCAM
TMEM212
HOXA3
HOXA4
RPL7
RDH10
KLHL25
GADD45GIP1
MAGIX
CPSF4L
GPR78
ARF1
ATOH1
GADD45G
KANK4
CDC73
MRTO4
EMC1
FMNL2
URM1
NRXN2
CR1L
PCBD2
BNIP3
PDPN
MSX2
GORAB
GTF3C4
DDX31
HOXB3
HOXB4
MBNL3
CDX1
HES1
RPN1
CNPY2
HAO1
HOXC4
TMPPE
GLB1
ST18
KDM2B
METTL11B
WBP1L
RBBP7
PNKD
OTUB2
CSRNP1
DMBX1
FKBP1A
KIAA0895
ZNF585B
ZNF383
FZD8
IL17RD
METTL24
TRABD2B
EXT1
SMPD1
AXDND1
ETS1
HOXB1
STK38
SKIL
PRUNE2
FOSB
SRCIN1
ZFHX2
KLHDC8A
TLE3
GATA6
PFKP
FGF2
ALKBH5
MALRD1
ZADH2
TSHZ1
ZGPAT
ARFRP1
CCDC33
CACNA1D
SP7
HSPA1L
HSPA1A
TTC13
ARV1
CA4
ADNP2
LZTFL1
GAD2
CDH12
KRT74
ALDH1A2
HNRNPA3
TTYH1
PLAGL1
SRGAP2C
SRGAP2B
MMP3
FOXP4
HOXA2
EBP
SP8
CTXN3
SNCG
MMRN2
FGFR2
TRIM65
MRPL38
ARL4D
MYRIP
HES7
ALOXE3
LIG3
HOXD3
HOXD4
LRATD2
ONECUT2
PDHB
MESP1
WNT1
C5orf63
CLGN
SYBU
SULF1
HECTD3
NKX2-2
SRSF11
LRRC40
MEIS2
ABLIM3
ADGRL2
YWHAB
OLFML2A
NR6A1
TKT
GIMAP5
FRG2
LY6G6F-LY6G6D
LY6G6F
MPIG6B
LY6G6C
LY6G6D
FBXL18
ACTB
PRCP
DDIAS
NEBL
MDFIC
CHI3L1
PITX2
MYBPH
C1QL3
CDC42EP2
RNF32
PRKRIP1
PBX3
SCN5A
CCDC200
PDE12
PAX4
NAV3
TTLL6
VEZT
FGD6
EVX1
GUCY1A1
DLL4
CHN2
CPVL
EIF4H
NECTIN1
LRRC8C
FMOD
SPCS1
GLT8D1
CDT1
PIEZO1
FAM72C
FAM72D
APBA1
TBX3
AEN
HOXB8
HOXB7
HOXB9
CLDN9
CLDN6
GUK1
GJC2
SNX1
CIAO2A
FAM3C
C11orf95
SOST
SLITRK5
ZDHHC1
NUP210
DERL3
SLC2A11
ABHD14B
ABHD14A-ACY1
ABHD14A
PCBP4
GDNF
B4GALT5
SUSD6
DGKZ
HERPUD1
PAH
ASCL1
TLE2
MEIS3
MDFI
LYPD6B
NCOA7
FAM107B
FBXW11
FOXD1
MYLK4
ASXL3
CADM3
STK38L
TBC1D8
VGLL4
GSPT1
TMEM123
BMPER
NELFA
LHPP
HHIP
TMEM131L
KDM8
H2BC17
H2AC17
H3C12
ZNF740
CSAD
DKK1
OTX2
HOXD1
CNTN4
ULBP3
RPS24
POLR3A
BNIP2
ITPRIP
IPO8
AFMID
TK1
HOXA7
HOXA9
ARSI
GCNT2
EML4
HAS2
DDAH1
CCN1
ENO1
RASL10B
DUSP6
SH3D19
BUB1
TRAP1
TEAD1
RABL3
GTF2E1
GRAMD2B
CSRNP3
SNAPC1
TNFRSF1A
PTGES3
TMEM143
SYNGR4
MYORG
C9orf24
WNT10A
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
UQCC2
ZPLD1
CS
LIN28B
YAP1
LINGO1
CMTR1
ZNF471
TMEM275
NMNAT2
PAX2
PKNOX2
KCNN4
OR52E2
CCDC43
EYA1
CFAP410
COQ3
KLF6
RPH3A
LRRC4B
RPS10-NUDT3
RPS10
GATA3
MLIP
GCNT1
PAPPA
MAB21L2
AGO1
TCHP
ALPI
PPM1B
EBF2
RARA
DAPL1
TPM1
CUEDC1
HOXB6
DACH1
CHD8
RNF138
PAX3
FAM222A
SEPHS1
NUDT10
TMSB15B
CCDC85A
WDR74
STX5
PANK2
ARHGAP24
TPRA1
FAM131B
SLC2A9
AXIN2
LIMCH1
RGSL1
TMEM70
ELOC
TPCN2
ATPAF1
TEX38
C6orf132
PROX1
INSM1
ZNF746
TMEM120B
TMEM132C
C8B
EPHA5
NEUROD1
OR10AC1
JCAD
CXCL12
KCNJ5
EYS
KIAA1522
PSMB5
OR13A1
LRRC4
MUSTN1
ITIH4
MAPK8
CCDC169-SOHLH2
CCDC169
FABP7
NABP1
ADAMTS15
FXYD2
DSCAML1
KHDRBS1
HEBP1
LARP7
FGF19
CDK5R1
PLCH1
CCIN
GYPC
SERTAD3
KRT16
ABCB5
ZFHX3
QPRT
FBXO46
MEIOSIN
PCDH18
LRGUK
VAMP8
VAMP5
HOXA1
LIN28A
WASHC3
PRSS23
MPZL2
CYP26A1
ITPK1
MTCH2
NPEPL1
MBNL1
ZNF341
KRTAP3-2
KRTAP3-1
UBR2
ZNF703
CRYM
KCNN2
MAFA
RBPMS
CA6
RSPO4
RAB11FIP1
CLDN2
FAM162A
CCDC58
ASIP
THEG
SPDYA
USP17L21
USP17L20
USP17L12
USP17L22
SHMT2
PGLYRP1
IGFL4
NFE2
DNTT
SREBF1
SLC7A5
CLMP
SYT7
SLC35E3
GPR20
RFX6
CBX4
EVPL
USP17L13
USP17L17
USP17L15
FBLN2
ID2
BBS9
FOXP2
CYP51A1
EIF2S1
ATP6V1D
EMP3
ADM
CCDC114
DTNB
DSP
LOXL4
CITED2
KDM3A
LRRC10B
RUNX1T1
CLDN3
SH2B1
SLC12A9
MCC
EPHB4
MKNK2
TOMM34
STK4
ID3
OAS1
LSM14B
TRDMT1
SMAD7
GABRR1
BRINP1
NUTM2D
MSI2
ADAM18
TESC
IRS2
PPP1R3B
ADO
ACSM6
SOX12
LRAT
TRIM2
EOMES
CERS6
CDC20
DRD2
DST
ABCA5
LIMS1
KDM6B
RNF24
BHLHE23
TBC1D10A
SALL4
KAT6B
CLDN11
EFNA5
CD36
ZGRF1
TMEM107
CD99L2
RARB
NPHS1
OCLN
APLP1
ZMAT4
KIRREL2
UNCX
ASB6
COL17A1
NRARP
KCNH1
C8orf34
PKD1
VENTX
XIAP
UTF1
LEUTX
MRPL34
DDA1
ABHD8
PEPD
PAX8
CYREN
PPFIBP2
LRRC45
CENPX
NEDD9
PACSIN2
MYC
TCF20
ANAPC4
RASL10A
GAS2L1
SALL1
ANO4
ERCC1
ARID3C
DCTN3
KMT2A
FAM72B
MPP4
ANK2
RASL11B
ERLIN2
FRMD7
ATP1A4
ZNF214
NLRP14
HEYL
BAZ2B
FREM1
HHIPL2
CATSPERG
BMPR1B
TBL1XR1
SLC10A2
TP53BP1
MAP1A
ELF1
WBP4
CBX7
ABHD11
ASS1
CENPBD1
DHX32
ARHGEF10
MAGEA11
SIPA1
PTPRD
REC8
GAS8
PTGR1
LPIN1
RCOR3
GBX2
SCGB1A1
STARD4
CEMP1
PDPK1
OR8J1
NRG1
CSNK2A2
SHOX2
RSRC1
PRICKLE1
RPRM
MRGPRE
OXER1
ARID5B
CDK15
SIK1B
SIK1
IFT74
PHC2
KIF16B
FTL
BAX
KRT20
TLE4
SERPING1
C7
GOLGA6L4
NPAS4
PLA2G2A
TRPM3
FAM178B
ARID3A
DNAJC25-GNG10
DNAJC25
H1-3
H4C7
H4C6
CSTF2T
TLE1
GNAI1
ERRFI1
HOXC6
HOXC5
HRK
C3orf52
ZIC3
FOXD4L5
TFDP2
STX3
HOXA5
ZFP36L2
HOXA6
BTRC
ZFHX4
SOCS3
BRWD1
RBM20
CER1
ECM2
ZNF76
CST6
AHSP
BTBD10
CATSPER1
MLEC
AHDC1
DEFB106B
DEFB106A
DEFB105B
DEFB105A
DEFB104B
DEFB104A
PPP1R35
ZCWPW1
MEPCE
MSGN1
CPA2
PRTG
RNF220
POLR1D
LNX2
CHODL
PLEKHA5
SLC45A3
RNF38
TWIST1
MVB12A
BST2
TMEM198
CHPF
SPRY4
RCOR2
TP53I11
EPHA1
GXYLT2
PRTFDC1
MGST1
NOTUM
DLL3
CEP97
STAG2
PRDX6
WNT5B
MNX1
ZNF474
RCN1
MNT
CTBP2
ZSWIM1
SPATA25
NEURL2
CTSA
PPP2R2C
TAGLN3
TLN1
CREB3
PLEKHA6
PEX14
DFFA
REST
RBFOX2
DDX46
DMAP1
NFIX
CGGBP1
GNAI2
BAK1
RFFL
C3orf38
ADAMTS19
RGS3
SLC39A8
KRTAP4-8
KRTAP4-12
KRTAP4-11
INHBE
GLI1
NAV1
FGF8
STRADA
GPR62
KLHL15
EAPP
SPIN1
ADAMTS18
DNASE1L3
IFI16
PYDC5
OTUD7B
CASC3
BCAT2
DUSP4
KSR1
DUSP12
LHX2
SOX6
CXXC4
NDUFS7
GPX3
TPST2
CAST
DRAP1
C11orf68
ZBTB45
TRIM28
ARHGEF38
ATXN7
PCF11
STRA6
CABP7
TUBB2A
MAMDC2
MTRNR2L1
MTRNR2L2
MSH3
DHFR
ID1
SOAT2
IGFBP6
NOTCH2NLC
DHRS3
MTRNR2L8
SP2
ARID3B
UNKL
NOTCH2
SPATC1L
C16orf91
G6PC2
IER3
FLOT1
PDE4DIP
MUC20
H2BU1
H2AW
ZNF775
DPP9
TBL2