ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX6039039 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◣ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

RABL2B
ZNF335
RABL2A
PSMD1
DYNC1LI2
PSMG2
CEP76
CACTIN
DUSP29
NME6
IPO13
POLR3F
DZANK1
MAPKAPK5
TAOK3
SUDS3
FAM187A
EFTUD2
CCDC103
NVL
NEUROG3
DPH6
VTI1B
NUP85
VDAC2
DCTN1
RPL21
C19orf48
NUP205
TBCK
AIMP1
HSPA9
S1PR4
NCLN
STAM
GOSR2
MRPS7
MIF4GD
GGA3
TSNAX
RWDD1
POLR2E
GPX4
SKP1
HADHB
HADHA
STAM2
CDX2
TTC8
SEC61B
PNO1
ZNF576
IRGQ
SLC35B1
ATP5MG
RPS23
ATP6AP1L
MRPS5
SRD5A1
NSUN2
ZNF503
PAK1IP1
C6orf52
SMC2
LOC102724770
DGCR6
TLE6
CDCA7L
NNAT
BLCAP
UPF2
TSN
RBKS
BABAM2
VARS1
FARSB
CAPRIN1
PDAP1
BUD31
DLX4
NEUROD1
SFI1
EIF4ENIF1
REXO1
SUPV3L1
PES1
COX7A2L
ACTR10
FRG2C
LYRM4
FARS2
EXOSC5
BCKDHA
TMED1
SELENOF
HS2ST1
GOLGA5
DUX4
ZRANB2
FGFRL1
RPL35A
IQCG
LMLN
FAM104A
C17orf80
USP1
TM9SF1
IPO4
TSSK4
FZD8
PI4KB
PSMD12
RBBP5
MRS2
HSPA1B
ICE1
ADK
AP3M1
NDUFA4
WDR6
RPS27A
CLHC1
PTGES2
INSM1
PAF1
MED29
COMMD1
CCT4
DLL4
VEZT
FGD6
NEUROG1
SART3
ISCU
PALM2AKAP2
MUC20
MRPL11
RPS12
PDE6B
UFM1
RABGGTB
PIP4P1
OSGEP
APEX1
DNAJB7
XPNPEP3
ST13
PCBP1
ANAPC7
ATOH1
C6orf47
APOM
BAG6
PROSER1
NHLRC3
RAB11B
DNAJB8
DUSP6
NFKBIL1
DDX39B
ATP6V1G2
ECEL1
NKX2-3
SF3B3
COG4
ST18
MYRIP
DAPL1
RBL2
SHB
HESX1
POP5
GALNT10
PIN4
FOXC1
HES1
FRAT2
STK36
RNF25
ID3
EIF2S3
TAF9
RAD17
AK6
RPS29
LRR1
MBTPS1
FRG2
LEFTY2
LPIN1
ANKRD1
SEC11C
DENND1A
UNCX
PMAIP1
PNPLA1
GBX1
ARHGAP11A-SCG5
ARHGAP11A
CDH18
LIG3
GADD45GIP1
KLF17
SUCLG1
ZNF608
EHF
BNIP3
OR6B2
NDUFA10
CALM2
IL23R
NXPH4
ZNF664-RFLNA
ZNF664
CCDC92
TPRA1
UBE2I
GADD45G
SKIL
CERKL
PAX8
RPL7
RDH10
SEC22B
TLE2
AEN
PCBD2
RBPJ
TCP10L
SCIMP
CNTLN
ZNF585B
ZNF383
CCDC200
GATA4
OPA3
NCOR2
MRTO4
EMC1
KHDRBS1
PDHX
APIP
BCOR
TMEM70
ELOC
MSX2
PAH
ASCL1
ACOT2
MBNL2
NEUROG2
PHLDB2
AMOT
GORAB
FAM151B
ARL4D
TIGD1
EIF4E2
MAL
GTF3C4
DDX31
MAGEA11
DTNB
COCH
SMAD7
NKIRAS1
NR1D2
UPF3A
KDM6B
GJA10
ALKBH5
BMP7
HCRTR1
C5orf63
TMPPE
GLB1
MLH1
EPM2AIP1
RAB17
TVP23C
IL17RD
OTX2
ARHGEF38
CNPY2
ICMT
HES3
ZBTB38
SYBU
MYSM1
SLC22A24
RPN1
GSR
ZGPAT
ARFRP1
CDC73
RAD54L2
ZNF649
OAZ3
LYPD6B
SYT12
AXDND1
PRUNE2
DMBX1
USP44
MBD2
APLN
ZNF592
NKX2-6
HOXB1
BANP
C15orf61
ZNF652
HEY2
MARCO
CHN2
CPVL
CCDC85A
GPR108
TRIP10
LDLRAD4
PKIB
KCNN4
CERCAM
SPCS1
GLT8D1
SLAMF1
BICRA
ANKLE2
FXYD2
DSCAML1
SCAMP4
ADAT3
RAN
DUSP4
SRSF11
LRRC40
ETFDH
C4orf46
PLA1A
CHST12
MACROH2A1
CABIN1
GSTT4
RPP25
STK38
USP17L21
USP17L20
USP17L12
USP17L13
USP17L11
USP17L18
USP17L10
PRDM14
FZD10
MEOX1
MS4A4A
ZNF397
TMEM242
TFAP2A
CAV3
INKA2
CNTN4
KIF21B
RGS19
OPRL1
LKAAEAR1
PTCH1
USP17L22
EYS
OTX1
NOG
HNRNPA2B1
CBX3
NFATC1
BTNL9
CLEC10A
ELF3
GATA3
FRMD7
BAMBI
RSPO4
TRIM65
MRPL38
ATP6V0A4
HECA
LYPD1
FOXP2
GBX2
KCNK2
ZNF850
FOXA2
DDX3X
PDE12
PPP1R35
STIL
ZCWPW1
MEPCE
SYNE2
HEBP1
SNX1
CIAO2A
MTRNR2L1
TBC1D8
RPH3A
FAM118A
PCDHAC1
EFEMP1
CFAP126
RGSL1
SLC40A1
HAND1
ERLIN2
JAKMIP1
OLIG3
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
HNRNPD
MIER1
DNAI4
USP17L19
BUB1B
RYBP
DIRAS1
CLDN15
ARHGAP28
FIS1
TTC13
ARV1
LRMDA
ACKR3
HOXA3
HOXA2
GRHL2
METTL11B
PLEKHA5
NFE2
HIC2
CERS2
ANXA9
C10orf53
LIN28A
NCOA2
NTAN1
RBBP8NL
GPC6
NDUFV2
TYRO3
STRADA
LIPC
MAST2
C6orf163
SOX14
HOXA1
CCND3
TAS2R9
TAS2R8
TAS2R7
TCHP
IGF2
USP17L17
USP17L15
SLC12A3
HAPLN1
SSPN
DLX6
MINK1
RARA
ZFAND3
TMPRSS7
RPEL1
ST3GAL2
H2BU1
H2AW
SLC16A12
CDS1
NFIC
MID1
RUNX1T1
SNX16
RNF32
CADM3
CYP26A1
CHKA
TMEM41B
CD101
PDCD2
CHPT1
ZNF746
TLE5
VENTX
UTF1
BTBD3
TMEM275
CCDC172
TMCC3
H3-3A
MEIG1
DCLRE1C
ACOT1
PRSS22
SGK1
TBL1XR1
ANO1
MNT
YAP1
SDK1
TVP23B
PXMP2
POLE
BTF3
KAZALD1
CCL26
KLF6
UNKL
C16orf91
PPP1R1B
NAGLU
LCOR
RIMS2
NEUROD2
METTL24
ZNF285
OPLAH
CEMP1
PDPK1
ZNF436
SYT7
ZNF853
ETS1
HSPA1L
HSPA1A
TNS3
TRAP1
OSCAR
NDUFA3
RBBP7
FOXF1
ZNF90
GALNT8
PCLO
ZMIZ2
ZFP37
KAT6B
FDFT1
CCDC33
ARL14EP
LIPK
PRDM10
PRDM12
TEX46
KDM1A
EIF4H
SLC25A6
LEF1
MATR3
HOXB9
ZNF891
ZNF10
CXXC4
ADGRA3
WDR74
STX5
MTCH2
EN1
FAM234B
RIMS1
CD99L2
ZNF138
BRWD3
ZNF81
TMEM185A
PTPRE
TENT4B
RPS10-NUDT3
RPS10
SPIN1
STAT1
KCNJ4
FAM53B
PTPRG
CHD8
SP7
CLDN9
CEMIP2
CLDN6
LYRM7
HINT1
CCDC169-SOHLH2
CCDC169
NAV2
ZNF740
CSAD
SLC2A6
VIP
STRA6
LIX1
CENPBD1
PRSS8
SLC39A7
RXRB
HSD17B8
COL11A2
CBX4
BUB1
FANK1
STON1-GTF2A1L
FAM89A
WNT3
OTP
TEAD3
CCDC88C
PODXL
ASB6
APBB1IP
FAM24B
PAX7
FAM120B
DLL1
UBE2D2
TIPIN
AGO1
NBPF26
NBPF19
NBPF14
GARS1
GOLM1
TRIM45
SUCLG2
MACROD2
SEL1L2
ORMDL3
GSDMB
ERI1
FTL
SMUG1
BAX
TMEM167B
COMT
TXNRD2
TRIM56
ALDH3A2
PLAGL1
PHACTR2
LHX1
SYTL1
GYG2
GAGE10
GNG4
CNOT2
BCAT2
TNRC18
SEC14L1
UPK2
NELFA
PRSS47
SHBG
FXR2
GC
PKNOX1
SEMA3C
CDX1
DUSP12
RASL10B
YTHDF2
KIF26A
BTG1
RIT2
EVC2
EVC
DHRS3
PELI2
AHSP
ZNF552
VIPR2
ZNF296
GEMIN7
SH2B1
NFAM1
ZFP64
SYDE2
FBN2
FREM1
SERPINA1
ZNF292
SERTAD2
ASS1
REV1
ANKRD28
PARP16
HOXB3
HOXB4
HOXB5
MAMDC2
RARB
MTRNR2L2
MSH3
DHFR
ARF1
HOXA4
WNT1
EAPP
ID1
SOAT2
IGFBP6
NOTCH2NLC
MTRNR2L8
LARP7
GLRA1
SP2
ARID3B
SNAPC1
NOTCH2
SPATC1L
ID2
ARHGAP10
NR2F1
G6PC2
IER3
FLOT1
CBFA2T2
PDE4DIP
ZNF775
TMEM107
NDUFS7
ZP4
SERINC5
ZSWIM1
SPATA25
NEURL2
CTSA
RAB11FIP1
DPP9
IGFBP2
LZTS1
TLE4
TBL2
USP29
ZFHX4
TPM1
ERCC1
BBS9
BHLHE40
LBX1
TLE3
PCGF1
DDAH1
FOXP1
ERRFI1
PHOX2B
VSIR
AQP6
NBAS
TTI2
LBX2
ARHGDIA
TBX3
HOXA5
P4HB
PHC2
MLEC
ASB2
FAM222A
TEPSIN
NDUFAF8
NBEAL2
CCDC12
ARHGAP24
FGF19
ADAM18
DNM2
ARID3C
TBX2
COL23A1
NCOA7
NHS
TAF12
CITED2
RHBDD3
EWSR1
S100A10
ADNP2
PPP6R3
HOXC4
CRYAA2
CRYAA
SP1
FBXO31
URM1
SYTL3
HPD
MINDY2
SP5
CS
FILIP1L
EXOC2
HUS1
MAP1LC3B
DCTN3
H2BC17
H2AC17
CCN1
FRA10AC1
SYNPO
SMAD3
HPCAL1
PDHB
CNTN1
ANK2
NFIA
ZFHX3
PKDCC
CLGN
BAZ2A
ARSG
RPL22
RNF207
XKR7
FABP7
STX18
NPAS4
E4F1
CAMTA1
RAB5B
PMEL
CDK2
PPFIBP2
ITGB6
STAP2
CRABP2
TLE1
TNFRSF19
ARHGEF28
MRPL34
DDA1
ABHD8
HOXC6
PDE4D
DOLPP1
OTUD7B
BAIAP2
KANSL3
FER1L5
ARRDC4
KDM2B
PGK1
TMEM120B
SEPTIN9
DONSON
ABLIM3
DYNLT1
ETAA1
ATP5F1B
MAB21L2
POR
ATF6
FRYL
MSX1
SMPDL3A
JUP
PDZRN3
SH3BP2
ARHGAP22
PRRX1
PC
CERK
EXOSC4
KATNB1
RPS24
POLR3A
KCNAB2
BCL3
MRPL20
MYLK4
PANK2
PPCDC
TRIB1
NINJ2
MEIS2
RARG
PTK2B
BMF
CCDC174
IRF2BP2
FAM72C
RHBDD1
SQSTM1
CLCN3
TMEM101
CCNL2
MBNL3
ABHD2
SREBF1
GPCPD1
QPRT
ADAP1
RING1
SMARCD2
SIRT4
NOTCH2NLB
NOTCH2NLA
MFSD10
MTMR4
MALRD1
PRKAG2
MIDEAS
ELOVL5
TOP2A
ABCC10
HEXIM2
TMEM9
SLX1B
SLX1A
LFNG
BOLA2B
BOLA2
ZNF687
SMG6
ZNF718
ZNF595
NBPF1
ZNF367
ZFP36
PLEKHG2
SACM1L
PSMB3
PCGF2
SLC2A9
TRIM46
KRTCAP2
RASSF5
NRL
ATP1A1
NOL4L
FURIN
MUC3A
MRPL3
SPG7
KAT7
RNF34
SLC35E3
PCNA
RABGAP1L
MRPS31
EIF1B
CBX5
INHBE
GLI1
ANGPTL4
PSPN
ALKBH7
DACT2
RPL34
TLX2
DLC1
ASXL3
PPP1R18
NRM
SMIM28
RFX1
SOCS3
ITGAV
C9orf92
ARHGAP30
THOP1
SGTA
POLDIP3
NUBP1
HNMT
NFKBIA
RHOQ
ATP6V1E2
TRAF7
EIF2AK3
FAM72D
ZFAND2A
STIP1
GTF3A
NAV3
OSBP
SHC1
GRIK2
RNF103-CHMP3
RMND5A
RPS7
DNAH1
ZNF77
SKI
DCAF11
SHF
TRIM7
ATP1B1
MYBPC3
PSMD6
LRATD2