ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584305 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◣ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

NEUROG2
TLE6
ZNF335
LOC102724770
DGCR6
ZP4
RABL2B
MAPKAPK5
PSMD1
RABL2A
NME6
HES1
IPO13
VEZT
FGD6
NEUROG3
RWDD1
CACTIN
ICMT
HES3
VDAC2
TAOK3
SUDS3
NUP85
ZNF503
POLR3F
DZANK1
MBTPS1
DUX4
HSPA9
IGFBP2
DYNC1LI2
DUSP29
RPL21
NVL
ATP5MG
FAM187A
EFTUD2
CCDC103
VTI1B
PAK1IP1
C6orf52
ARHGAP10
TBCK
AIMP1
DCTN1
FRG2C
NNAT
BLCAP
NUP205
POLR2E
GPX4
ACTR10
SRD5A1
NSUN2
REXO1
CDX2
DPH6
SKP1
PMAIP1
C19orf48
S1PR4
NCLN
EXOSC5
BCKDHA
STAM2
PSMG2
CEP76
UPF2
MRPS7
MIF4GD
GGA3
SLC35B1
STAM
PES1
TSN
PNO1
GOSR2
HADHB
HADHA
URM1
SUPV3L1
INSM1
GLRA1
LYRM4
FARS2
FARSB
SEC61B
ANAPC7
RBBP5
CAPRIN1
SKIL
ZNF576
IRGQ
WNT1
RPL35A
IQCG
LMLN
ZDHHC1
RBKS
BABAM2
LARP7
LZTS1
PSMD12
TSNAX
TMED1
PCBP1
MRPS5
SART3
ISCU
NHS
ATOH1
ZNF608
GOLGA5
NDUFA4
VARS1
SF3B3
COG4
SFI1
EIF4ENIF1
ICE1
TTC8
ARF1
PAF1
MED29
MRPL11
COX7A2L
RPS12
PI4KB
SMC2
PDAP1
BUD31
IL17RD
BNIP3
RPS23
ATP6AP1L
PIP4P1
OSGEP
APEX1
MALRD1
GADD45G
RBBP7
USP1
PANK4
HES5
HOXA3
HOXA4
ZRANB2
NAV3
TM9SF1
IPO4
TSSK4
LEFTY2
DUSP6
NOTCH2NLC
NOTCH2
NEUROG1
HSPA1B
KDM8
FAM104A
C17orf80
TTYH1
SELENOF
HS2ST1
PPP1R1B
NBAS
CCDC33
TESC
RPS27A
CLHC1
CERCAM
NFKBIL1
DDX39B
ATP6V1G2
UFM1
DNAJB7
XPNPEP3
ST13
G6PC2
PAX6
PRRX1
ADK
AP3M1
UBE2I
SERINC5
FAM222A
ST18
B3GALT5
FZD8
RPS29
LRR1
DLL4
NRXN2
CPSF4L
PLAGL1
PHOX2B
RABGGTB
PDHB
ETS1
PROSER1
NHLRC3
HOXB1
CR1L
PTGES2
NEUROD1
HOXB3
HOXB4
ADNP2
TMEM212
ASXL3
OR10AC1
BICRA
PNKD
HHIP
C6orf47
APOM
BAG6
TLE2
ITGB6
LHPP
NCOA7
RASL10B
RAB11FIP1
HNRNPA2B1
CBX3
FKBP1A
PIN4
SULF1
NOXO1
SYNGR3
GFER
TAF9
RAD17
AK6
FRG2
TRABD2B
CNTN1
NEDD9
ERRFI1
GTF3A
NUTM2D
PDPN
RYBP
PDE6B
MRTO4
EMC1
STRA6
UNCX
OPLAH
DDX3X
SLC10A2
GUCY1A1
SOX12
HOXD3
HOXD4
SEC11C
EPHA5
MYRIP
DLX4
CRYAA2
CRYAA
PSMB5
STK36
RNF25
RGS12
TMEM120B
NEK3
KAZALD1
CSRNP1
CBFA2T2
ARHGAP11A-SCG5
ARHGAP11A
RIMKLB
PAH
ASCL1
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
BFSP1
ME3
LIMCH1
PRUNE2
COMMD1
CCT4
CCDC200
OR6B2
NDUFA10
NR2F1
METTL11B
RHBDD3
EWSR1
ZFX
KDM2B
BANK1
SCGB1A1
LRATD2
GADD45GIP1
PDHX
APIP
CNTN4
HES7
ALOXE3
ARL4D
TPRA1
CDCA7
TTLL6
KRT16
RPN1
SCARB1
LPIN1
FJX1
GFRA3
CACNA1D
RPH3A
TLE4
OTX1
HNF1A
EIF2S3
TIGD1
EIF4E2
SPACA1
TMEM107
RAI14
KIF26A
ABCB5
ZGPAT
ARFRP1
COL17A1
SCARF2
CNPY2
SYBU
PCBD2
OAZ3
BRWD1
MBNL3
WDR59
UPF3A
LRIG1
KCNN4
CLGN
PDGFA
GDNF
RPL7
RDH10
REV3L
SUCLG1
HOXA2
SOCS3
MDFIC
CLDN2
CDC73
ANKLE2
LBX1
SOX11
HNRNPD
PPP1R1A
LAMA4
ARID3C
DCTN3
RARA
TCF7L2
DMBX1
ECEL1
C6orf132
GPR20
AXDND1
ZMAT4
TNC
CLMP
GTF3C4
DDX31
REC8
WBP1L
EHF
DHRS3
TBC1D8
MAFA
ADAM18
SALL1
ZNF585B
ZNF383
DDAH1
CCN1
NID1
CAMTA1
CXCL12
ECM1
ERLIN2
AQP6
SNAPC1
BAHCC1
LIN28B
PDE12
HOXA1
FXYD2
DSCAML1
CDX1
DBX1
HOXB8
HOXB7
HOXB6
FGFR4
CATSPERG
MSX2
IRX5
BAIAP2
SLC45A3
XIAP
GORAB
TPH2
C15orf61
CPN2
ZNF214
NLRP14
ANK2
ALDH1A2
MAST2
KIF21B
GPR176
METTL24
VOPP1
CD99L2
NFILZ
SIK1B
SIK1
USP17L21
USP17L20
USP17L12
USP17L22
C8orf34
H2BU1
H2AW
ZADH2
TSHZ1
PPM1B
SLC39A6
ELP2
TMEM131L
DIPK1B
TMSB15B
PRDM12
RBPJ
WDR74
STX5
CDH18
FAM214B
STOML2
PIGO
TMPPE
GLB1
FOXB1
ADAMTS15
PACSIN2
CD82
CYP26A1
TRIM56
RADIL
PIPOX
CADM3
QPRT
ZNF703
LIG3
BAZ2B
TPM1
GAD2
KDM6B
ABLIM3
ZSWIM6
KLF17
FABP7
EBF3
CPLX1
SCN5A
LRRC4
HMGN1
ID2
CDC42EP2
RPL24
LOXL4
ZNF746
SOX21
POU3F2
TEAD1
FAM107A
ZFP36L2
LRRC15
MYLK4
FOXA2
RILP
SLC22A2
OR8J1
LZTFL1
DEFA5
DHX32
ONECUT2
TBX3
CEMP1
PDPK1
ERCC1
HOXA5
PFKP
CUEDC1
HOXA6
RFX2
DST
ADO
PKNOX2
CHN2
CPVL
LINGO1
SYNE4
LOC101927572
ALKBH6
RPS10-NUDT3
RPS10
RPS24
POLR3A
EIF4H
ALKBH5
SLC7A5
SOX6
FABP5
FGF19
HNRNPA3
MTCH2
RNF138
FBLN1
JAKMIP1
LHX2
TEX30
ZFHX4
MSX1
NAV2
KLHDC8A
ADGRL2
ACSS3
ABHD11
PPP1R35
ZCWPW1
MEPCE
SMC6
GEN1
TRAP1
METRN
ANTKMT
SALL4
CCDC78
EIF2S1
ATP6V1D
HSPA1L
HSPA1A
MSI1
KLF6
RUNX1T1
TLE1
DTX4
FAM171A2
ID3
NEBL
KCNIP4
HOOK2
GZMK
PHC2
SPOCK2
YAP1
KMT2A
FRMD7
CST6
TBL1XR1
HOXA7
OTOF
FAM166C
CATSPER1
ITPRIP
CYP51A1
SPCS1
GLT8D1
ARHGAP24
H3-3A
MUC20
ZNF775
KIAA0895
C6orf226
NUP210
KMT2B
TDG
C12orf73
DAAM1
PPP2R5A
TPST2
GREB1
MEX3B
ADAMTS18
RPRM
PAX3
KRT20
EFNA5
KLHL15
CNKSR3
MUSTN1
ITIH4
SRY
PIGR
MEIS3
DHRS4L1
STMN1
OLFML2A
NR6A1
TLE3
C8B
SEMA6D
SRGAP3
HEY1
BBS9
HOXC4
PPFIBP2
SNCG
MMRN2
KEAP1
EIF4E3
LDHB
NMNAT2
DNAJC25-GNG10
DNAJC25
EBF2
DAPL1
ZFHX2
HOXD1
STK38
CA4
TFDP2
PAX4
FEZF2
CLDN11
C5orf63
HOXC6
HOXC5
LEMD2
THEMIS
LRRC10B
SERPING1
TPCN1
FGF2
TMA16
PCDH11Y
TMEM70
ELOC
ALOX5AP
GNAI1
PON2
TUBB3
MC1R
TGFBI
TANC1
USP17L13
USP17L11
USP17L18
USP17L10
HOXB9
ADM
CER1
CS
MEF2C
TAGLN3
CCBE1
MEIS2
IFI16
PYDC5
FBXO10
MNT
TCF4
TCF20
CEP97
ZNF285
MEOX1
TMEM14A
R3HDM4
IL37
RARB
LIN28A
NKIRAS1
NR1D2
RPL17-C18orf32
RPL17
ENO1
ATP1A4
TP53I11
MSI2
ZFHX3
HOXA9
LAPTM4A
MARCHF7
SP5
NUTM2G
SPG7
PCBP4
RFX3
GPR62
SRSF11
LRRC40
BNIP2
FABP9
USH1C
OTOG
ME2
PANK2
TYRO3
PCDH18
IFNA21
RGS16
LDLRAD3
FOXP1
PBX3
PRAMEF12
PRAMEF1
SEMA4B
C1orf141
IP6K3
ERI1
ELMO1
PLEKHA6
LYPD6B
LCA5
MRPL3
CSTF2T
FOXD1
CDK14
N4BP3
BTF3
HRK
EOMES
OLFM2
CRTAM
SEMA4F
M1AP
STARD13
ABAT
GAS8
NELFA
GPR157
TTC13
ARV1
REV1
RBP1
EAPP
MAMDC2
MTRNR2L1
MTRNR2L2
MSH3
DHFR
ID1
SOAT2
IGFBP6
MTRNR2L8
SP2
ARID3B
UNKL
SPATC1L
C16orf91
NFE2
IER3
FLOT1
PALM2AKAP2
PDE4DIP
NDUFS7
ZSWIM1
SPATA25
NEURL2
CTSA
SH2B1
DPP9
KAT6B
TBL2
USP29
SEC22B
TRIM65
GPR108
BHLHE40
TRIP10
MRPL38
PCGF1
VSIR
TTI2
LBX2
ARHGDIA
P4HB
MLEC
CDCA7L
ASB2
TEPSIN
NDUFAF8
NBEAL2
CCDC12
DNM2
TBX2
COL23A1
TAF12
CITED2
S100A10
SLC39A7
RXRB
HSD17B8
PPP6R3
SP1
FBXO31
SYTL3
HPD
MINDY2
FILIP1L
EXOC2
HUS1
MAP1LC3B
H2BC17
H2AC17
ANKRD28
FRA10AC1
COL11A2
SYNPO
SMAD3
HPCAL1
NFIA
PKDCC
BAZ2A
ARSG
RPL22
RNF207
XKR7
STX18
NPAS4
E4F1
RAB5B
PMEL
CDK2
STAP2
CRABP2
TNFRSF19
ARHGEF28
TMEM242
MRPL34
DDA1
ABHD8
PDE4D
DOLPP1
OTUD7B
ASB6
KANSL3
FER1L5
ARRDC4
GPC6
PGK1
SEPTIN9
DONSON
VIP
DYNLT1
ETAA1
ATP5F1B
FOXP2
MAB21L2
POR
ATF6
FRYL
SMPDL3A
POP5
JUP
PDZRN3
SH3BP2
ARHGAP22
PC
CERK
EXOSC4
KATNB1
KCNAB2
BCL3
MRPL20
PPCDC
TRIB1
NINJ2
RARG
PTK2B
BMF
CCDC174
IRF2BP2
FAM72C
RHBDD1
SNX16
SQSTM1
CLCN3
TMEM101
CCNL2
ABHD2
SREBF1
GPCPD1
ADAP1
RING1
SMARCD2
GATA4
SIRT4
NOTCH2NLB
NOTCH2NLA
MFSD10
MTMR4
PRKAG2
MIDEAS
ELOVL5
TOP2A
ABCC10
HEXIM2
TMEM9
SLX1B
SLX1A
LFNG
BOLA2B
BOLA2
ZNF687
SMG6
ZNF718
ZNF595
NBPF1
ZNF367
ZFP36
PLEKHG2
SACM1L
PSMB3
PCGF2
SLC2A9
CNOT2
TRIM46
KRTCAP2
RASSF5
NRL
ATP1A1
NOL4L
CALM2
FURIN
MUC3A
KAT7
RNF34
SLC35E3
PCNA
RABGAP1L
MRPS31
EIF1B
CBX5
INHBE
GLI1
ANGPTL4
PSPN
ALKBH7
DACT2
RPL34
TLX2
DLC1
PPP1R18
NRM
SMIM28
RFX1
ITGAV
C9orf92
ARHGAP30
THOP1
SGTA
POLDIP3
NUBP1
HNMT
NFKBIA
RHOQ
ATP6V1E2
TRAF7
EIF2AK3
FAM72D
ZFAND2A
STIP1
OSBP
SHC1
GRIK2
STAT1
PRDM10
RNF103-CHMP3
RMND5A
RPS7
DNAH1
ZNF77
SKI
ZNF740
DCAF11
CSAD
SHF
TRIM7
ATP1B1
MYBPC3
PSMD6
RAB26
SSBP4
RPLP1
TRIM26