ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584309 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◣ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
RABL2B
RABL2A
PSMD1
LOC102724770
DGCR6
NME6
MAPKAPK5
NUP85
LBX1
RWDD1
CACTIN
G6PC2
VDAC2
IPO13
TAOK3
SUDS3
HSPA9
NVL
NEUROG2
POLR3F
DZANK1
NNAT
BLCAP
DYNC1LI2
FAM187A
EFTUD2
CCDC103
PSMG2
CEP76
NUP205
WNT1
DUX4
HADHB
HADHA
VTI1B
RPL21
LYRM4
FARS2
STAM
ARF1
POLR2E
GPX4
C19orf48
GOSR2
ATP5MG
FARSB
CAPRIN1
ACTR10
S1PR4
NCLN
FZD8
EXOSC5
BCKDHA
PES1
ZNF503
FRG2C
SRD5A1
NSUN2
SEC61B
TSNAX
TBCK
AIMP1
ZNF576
IRGQ
REXO1
MRPS7
MIF4GD
GGA3
TSN
SKP1
UPF2
TTC8
TLE6
DCTN1
STAM2
SLC35B1
RBBP5
ADNP2
PAK1IP1
C6orf52
RPL35A
IQCG
LMLN
DPH6
SUPV3L1
PCBP1
ITGB6
PI4KB
PNO1
NOTCH2NLC
NOTCH2
GOLGA5
COX7A2L
MRPL11
ZNF608
VARS1
GLRA1
SART3
ISCU
PDAP1
BUD31
UFM1
ZRANB2
PPP1R1B
RABGGTB
SFI1
EIF4ENIF1
PLAGL1
ANAPC7
ICE1
PROSER1
NHLRC3
SERINC5
PSMD12
ANK2
ICMT
HES3
MYLK4
DNAJB7
XPNPEP3
ST13
NDUFA4
RPS12
RPS23
ATP6AP1L
SELENOF
HS2ST1
FABP7
SMPDL3A
UNKL
C16orf91
FGF19
ETS1
SMC2
USP1
TMED1
PIP4P1
OSGEP
APEX1
RBKS
BABAM2
HSPA1B
HOXA3
HOXA4
ADK
AP3M1
TLE4
HES1
RAB11FIP1
C6orf47
APOM
BAG6
EVA1A
RPS27A
CLHC1
DBX1
SEC22B
PARP11
ZFHX4
RHBDD3
EWSR1
IGFBP2
ARID3C
DCTN3
MRPS5
VEZT
FGD6
PIN4
RIMKLB
SF3B3
COG4
LARP7
TRABD2B
MUC20
PAF1
MED29
CDX2
BFSP1
RGS12
FAM104A
C17orf80
NEUROG3
TMEM120B
NBAS
ARHGAP11A-SCG5
ARHGAP11A
ABCG2
MRPL3
DMRT3
ME3
PALM2AKAP2
LRATD2
PRDM12
UBE2I
PRRX1
BNIP3
ARHGAP10
NFKBIL1
DDX39B
ATP6V1G2
CERCAM
BRINP1
TAF9
RAD17
AK6
COMMD1
CCT4
FOXP2
URM1
MEIS2
C5orf63
OR6B2
NDUFA10
SYBU
LAMA4
BICRA
SOX21
PDE4DIP
NR2F1
TPM1
ARHGAP24
SYNPO
VIP
MET
RUNX1T1
ATOH1
FRG2
MRTO4
EMC1
GAS7
MXI1
RPS29
LRR1
ADAM18
TMEM14A
GMPR
FOXD3
DDAH1
CCN1
MALRD1
FAM222A
NAV3
FXYD2
DSCAML1
ASXL3
SKIL
RPL7
RDH10
EIF2S3
LRAT
ERRFI1
TM9SF1
IPO4
TSSK4
PRUNE2
CACNA1D
IRF2BP2
OR10AC1
SUCLG1
PCDH11Y
INSM1
PAX8
SCGB1A1
IL17RD
HOXB3
HOXB4
DIO2
OPN4
NCOA7
SEC11C
HOXD3
CEP41
ID1
KDM8
TMEM275
PDHB
PRDM13
FGFR2
PTGES2
FRMD7
TLE1
TPST2
UNCX
LMO4
HOXD4
LZTS1
OR8J1
NUTM2D
NHS
TPRA1
RAI14
ATOH8
SMARCA2
SLC7A5
SPACA1
CLDN11
METTL24
MSX1
CCDC33
GTF3C4
DDX31
RBBP7
CPA1
PDE1B
LRIG1
COL17A1
ARL4D
PDZRN3
BAIAP2
PDHX
APIP
CLEC18C
GPR176
NEK7
LRGUK
PKHD1
ACSS3
PPFIBP2
RIC8B
PPP1R1A
FOXB2
ANKLE2
CITED2
HK3
PMAIP1
TLE3
GADD45GIP1
TMEM107
DTX4
SMURF1
KDM2B
WT1
HNF1A
SYNPR
GGCT
GATA6
OAZ3
CYP26A1
KIF26A
METTL11B
ALDH1A2
TPO
DLX4
TDG
C12orf73
STXBP5L
CLEC19A
NEUROD1
HOXB1
DUSP6
RFX2
LRIG3
NRARP
PAH
ASCL1
RGL1
GORAB
DAPL1
TMA16
RPL34
SPTBN1
SALL1
MYO10
SLA
FHL1
UBE2QL1
RABGAP1L
CCDC200
CRYAA2
CRYAA
PKDCC
DIPK1B
GRIK2
TRIM71
SULF1
CDH16
CHODL
TLE2
EVX1
ZNF214
NLRP14
ARHGEF28
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
B3GALT5
SEMA6D
TRAF3IP2
FEZF2
AQP6
VGLL4
TBX3
TMEM70
ELOC
ELMOD2
CAMTA1
MBNL3
NEUROG1
TNNI3K
FREM1
STK36
RNF25
RBM15
LRRC10B
CDC73
KIF21B
KLHDC8A
ZFX
KBTBD8
PANK4
HES5
CD69
LPIN1
PIM1
TANC1
MDFIC
ALPL
NEK3
DMBX1
NEBL
SLAMF8
DAAM1
RPN1
RHOB
PHC2
NFIA
MAB21L2
DDX3X
ZP4
PCBD2
PTCHD4
ZFAND1
CCDC198
CHMP4C
GFRA3
CNTN1
MSI1
BECN2
ZFHX3
HOXC4
ZGPAT
ARFRP1
PIPOX
YAP1
C10orf90
TESC
CR1L
NECTIN1
EGF
SNAPC1
NRXN1
FBXL18
ACTB
BNC2
CATSPERG
CLDN2
EVX2
POP5
ZPBP
STARD13
WRAP53
TP53
USP17L21
USP17L20
USP17L12
USP17L22
FOSB
LHX2
HOXA1
HOXA2
NXPH4
CNPY2
SOCS3
LRRC1
FOXP1
CLGN
ELMO1
MEF2C
PRR16
FABP5
CABP7
OCLN
KMT2A
PSMB5
RASL12
KBTBD13
PDE6B
CREB5
PLPPR1
CNN3
ZNF367
TP53INP1
PGLYRP1
IGFL4
SOX6
CDPF1
HNMT
MEOX1
HHIP
HNRNPA2B1
CBX3
MEIS3
SCN5A
MUSTN1
ITIH4
CBFA2T2
ZNF746
SALL4
TBC1D8
CXCL12
TEX2
CETN1
RBP3
PLEKHA5
SLC39A6
ELP2
NRG2
RPL17-C18orf32
RPL17
CRABP2
REC8
EFNA5
ALKBH5
VCAN
IGFN1
RARA
ABLIM3
PAM
SOX5
RILP
GADD45G
DHRS9
TMEM212
NMNAT2
LOC102724265
NCOR2
ABCB5
PCBD1
CADM3
SKA2
PRR11
LMO1
SKOR1
LIN28B
C1orf226
HTR1F
GUCY1A1
PLCH1
NBPF26
NBPF19
NBPF14
PDE12
ADM
FIGNL2
GNG12
GUCY2C
ZNF585B
ZNF383
CEBPA
ENO1
KCNIP4
ERCC1
ERLIN2
RFX6
BBS9
NELFA
GNAS
DRD2
SYCN
NCCRP1
REV3L
ECM1
CLEC18A
CSN3
MIER1
DNAI4
C8B
MILR1
ID2
PDPN
KRT20
PITPNM3
PJA2
NPAS1
PCDH18
ACP7
FAM107A
THEMIS
RPL9
LIAS
KRT16
NEUROD4
LIN28A
CD79A
ARHGEF1
MAGEA11
DHX32
ADO
MYH2
FILIP1L
EPB41L2
RAN
SREK1IP1
CWC27
B3GALT2
FSTL1
DLL4
NCOA2
PKNOX2
RASL10B
TMEM9
PGF
FOXL3
SPG7
EFNB2
SMIM28
CDC42EP2
GATA3
RFX3
JAKMIP1
MTMR7
NBPF9
LIMK2
POLR1D
LNX2
SPCS1
GLT8D1
DMD
LIX1
TTR
CDRT15L2
WDR59
RCOR1
GSX2
SYDE2
GALNTL5
USP17L13
USP17L11
USP17L18
USP17L10
FOXB1
BTBD1
LDHB
CDX1
CACNA1H
GSG1
SLC1A3
TNFRSF19
GAD2
NOTCH2NLB
NOTCH2NLA
KCNK16
MAP2
LMO3
PRRC2C
ADAMTS14
VAV3
GCSAM
LRRC4
AGMO
VSTM2L
ARL4C
SOGA3
OPLAH
SOST
EOMES
GZMK
GTF3A
NEDD9
PCDH8
PAX3
FGFR4
IKBKB
MNX1
USP17L19
LRP2
DUSP29
KCNN4
DACT2
DLG2
IRS2
HEY1
DGKZ
ARMC12
CCN2
KLHL7
TSPAN13
PHOX2B
BMPR1B
CDC42BPA
CLMP
OR5A2
OR5A1
LEKR1
TBL1XR1
MIDEAS
OTX1
SH3BP5
TMEM97
TRIM65
MRPL38
ADGRL2
DUSP2
ASTL
KDR
ZCCHC13
HAND1
PRM3
PRM1
IPO11
DIMT1
TNP2
TYRO3
CYRIB
PEX2
FABP9
GJA3
SLC10A2
UGT1A4
UGT1A5
WBP1L
TMEM132C
PRSS47
TRMT9B
PNKD
METTL3
FLVCR2
KRTAP12-1
PTPRZ1
CHD8
TMCC3
SERPINA1
SFTPC
LGI3
CA14
KAT6B
PPP1R12B
CLEC18B
PRSS23
CS
ZBTB18
VANGL2
SRY
GPC4
EFNB1
SLC2A9
ASPH
BCO1
SH2B1
GFRA1
HES4
NAF1
AHSP
VASN
GPR20
SNCG
MMRN2
TCF4
PAX7
ST18
MSX2
AGPAT4
GPC6
RXRG
NR2F6
ABAT
PMFBP1
INHBA
EPB41L5
SOAT1
FAM171A2
SLC18A1
RTP4
ABL1
ADGRL3
ASB6
TMEM72
TAGLN3
MBTPS1
BRWD1
RCOR3
CDH18
DICER1
CCND1
PFKM
FAM181A
RPS24
POLR3A
FOXA2
FLRT3
ME2
TRDMT1
AIPL1
PIMREG
WDR74
STX5
MYRIP
PADI2
PCBP4
CRB2
GPR62
ARHGAP22
VOPP1
CER1
NKX2-6
RBP1
CENPS-CORT
CENPS
ABHD11
SLC22A2
CCDC141
CMTR1
TAS2R9
TAS2R8
TAS2R7
RAPGEF4
MAFA
SUPT20HL1
PPP1R16B
NOTCH1
CNR1
EAPP
CNOT2
MECOM
ASB1
PREX2
PAK3
PDX1
MAMDC2
MTRNR2L1
RARB
MTRNR2L2
MSH3
DHFR
SOAT2
IGFBP6
DHRS3
MTRNR2L8
SP2
ARID3B
SPATC1L
NFE2
IER3
FLOT1
H2BU1
H2AW
ZNF775
NDUFS7
ZSWIM1
SPATA25
NEURL2
CTSA
DPP9
TBL2
USP29
GPR108
LEFTY2
BHLHE40
TRIP10
PCGF1
VSIR
TTI2
LBX2
ARHGDIA
HOXA5
P4HB
PPP1R35
MLEC
CDCA7L
ASB2
TEPSIN
NDUFAF8
NBEAL2
CCDC12
DNM2
TBX2
COL23A1
TAF12
S100A10
SLC39A7
RXRB
HSD17B8
PPP6R3
SP1
FBXO31
SYTL3
HPD
MINDY2
SP5
EXOC2
HUS1
MAP1LC3B
H2BC17
H2AC17
ANKRD28
FRA10AC1
COL11A2
RPS10-NUDT3
RPS10
AXDND1
SMAD3
HPCAL1
BAZ2A
ARSG
RPL22
RNF207
XKR7
STX18
NPAS4
E4F1
RAB5B
PMEL
CDK2
ID3
CHN2
STAP2
TMEM242
MRPL34
DDA1
ABHD8
HOXC6
PDE4D
CPVL
DOLPP1
OTUD7B
KDM6B
KANSL3
FER1L5
ARRDC4
PGK1
SEPTIN9
DONSON
UPF3A
DYNLT1
ETAA1
ATP5F1B
POR
ATF6
FRYL
JUP
SH3BP2
PC
CERK
EXOSC4
KATNB1
RBPJ
KCNAB2
BCL3
MRPL20
PANK2
PPCDC
TRIB1
NINJ2
RARG
PTK2B
BMF
CCDC174
FAM72C
RHBDD1
SNX16
SQSTM1
CLCN3
TMEM101
CCNL2
ABHD2
SREBF1
GPCPD1
QPRT
SRSF11
ADAP1
RING1
SMARCD2
GATA4
SIRT4
MFSD10
MTMR4
PRKAG2
ELOVL5
TOP2A
ABCC10
HEXIM2
SLX1B
SLX1A
LFNG
BOLA2B
BOLA2
ZNF687
SMG6
ZNF718
ZNF595
NBPF1
ZFP36
PLEKHG2
SACM1L