ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584302 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◣ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

LOC102724770
DGCR6
ZNF335
SP5
RABL2B
RABL2A
POLR3F
DZANK1
ZNF503
MBTPS1
MAPKAPK5
CACTIN
LEFTY2
DUSP29
NME6
NUP85
PSMG2
CEP76
HSPA9
IPO13
DUX4
NVL
PSMD1
POLR2E
GPX4
TAOK3
SUDS3
RWDD1
PHOX2B
NEUROG2
LARP7
VDAC2
C19orf48
TLE6
SLC35B1
EXOSC5
BCKDHA
DYNC1LI2
NDUFA4
FRG2C
ZNF576
IRGQ
TSN
FARSB
DCTN1
UPF2
RPL21
GOSR2
TBCK
AIMP1
VTI1B
FAM187A
EFTUD2
CCDC103
NUP205
ATP5MG
REXO1
PMAIP1
S1PR4
NCLN
ANAPC7
ACTR10
PALM2AKAP2
CAPRIN1
NNAT
BLCAP
STAM
NR2F1
SEC61B
MRPS7
MIF4GD
GGA3
HADHB
HADHA
STAM2
MSX1
PNO1
SKP1
DPH6
PI4KB
RPL35A
IQCG
LMLN
GRSF1
PES1
TMED1
COX7A2L
CNTN1
SRD5A1
NSUN2
SMC6
GEN1
PAK1IP1
C6orf52
GOLGA5
TSNAX
TTC8
LYRM4
FARS2
ZP4
RBKS
BABAM2
RBBP5
UBE2I
ICE1
MRPS5
PSMD12
UFM1
TCF7L2
PDAP1
BUD31
SART3
ISCU
PAF1
MED29
PCBP1
RPS12
RPS23
ATP6AP1L
SF3B3
COG4
USP1
RPS27A
CLHC1
PROSER1
NHLRC3
FAM104A
C17orf80
SELENOF
HS2ST1
SUPV3L1
VARS1
SMC2
ZRANB2
PPP1R1B
KANK4
CDH18
RABGGTB
TM9SF1
IPO4
TSSK4
SFI1
EIF4ENIF1
ARHGAP10
CHRND
PRSS56
PRRX1
GRIP1
ADK
AP3M1
ICMT
HES3
MUC12
MRPL11
C6orf47
APOM
BAG6
MBNL1
HSPA1B
PIN4
NEUROG3
PIP4P1
OSGEP
APEX1
PTGES2
SPECC1
BICRA
DNAJB7
XPNPEP3
ST13
NFKBIL1
DDX39B
ATP6V1G2
ECEL1
NHS
FRG2
ALDH1A2
STK36
RNF25
HES7
ALOXE3
OR2L13
OR2AJ1
FMNL2
COMMD1
CCT4
PAX6
SIX1
CCDC33
RPS29
LRR1
MESP1
GATA6
OR6B2
NDUFA10
MBNL3
FBXL18
ACTB
PDE6B
TTC13
ARV1
LZTS1
ARF1
MSGN1
EXT1
NEUROG1
SUCLG1
ATOH1
OAZ3
PDZD2
PTPRB
ARL4D
CCDC200
DEFB106B
DEFB106A
DEFB105B
DEFB105A
DEFB104B
DEFB104A
ID2
GADD45GIP1
ADGRL2
OTX1
H2BC17
H2AC17
H3C12
FOXP4
TLE3
ABLIM3
CDX1
GLRA1
TMEM212
GADD45G
ARHGAP11A-SCG5
ARHGAP11A
EOLA2
EOLA1
SERINC5
ZFHX2
CERS6
FOXB1
ZGPAT
ARFRP1
KHDRBS1
CR1L
TAF9
RAD17
AK6
ZSWIM6
ZNF608
UNC5A
RPL7
RDH10
MYC
ZNF585B
ZNF383
SEC11C
SLAMF8
FOXA2
MAGIX
STK38L
ID3
STK38
KRT20
SLC39A8
KCNJ5
URM1
SRCIN1
HOXA3
HOXA4
CNPY2
SLC39A7
RXRB
HSD17B8
COL11A2
RING1
PBX3
IRX5
IGFBP2
RPN1
POU3F2
LYPD6B
TMPPE
GLB1
GDNF
EBP
SP8
SHMT2
NEBL
MRTO4
EMC1
CDC73
EIF2S3
PDHX
APIP
CHODL
HOXB3
CLGN
HOXB4
HNRNPA3
HOXB2
KLF17
ANKLE2
SMPD1
CPSF4L
CDC42EP2
KLHL25
PITX2
APBA1
OTX2
COQ3
ZNF285
SCN2A
TBX3
VENTX
UTF1
CADM3
HOXD3
HOXD4
HOXB1
CDON
NAV3
CACNA1D
PFKP
SKIL
MSX2
KCNH1
RFX2
DKK1
GPR78
NKD1
GAD2
GTF3C4
DDX31
USP17L21
USP17L20
USP17L12
USP17L22
NRXN2
ETS1
PDPN
HOXA1
HOXA2
SNCG
MMRN2
BNIP2
GORAB
KDM2B
USP17L13
USP17L11
USP17L18
USP17L10
COLCA2
GSPT1
TLE2
ST18
KRT74
PDE12
EYA1
MEIS3
LRATD2
PTGES3
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
SRGAP2C
SRGAP2B
USP17L17
USP17L15
FOSB
IPO8
NFE2
FGFR2
SOST
GIMAP5
H2BU1
H2AW
METTL11B
CBX4
OR13A1
ALKBH5
NKX2-2
PAX2
ZNF746
SP7
NR4A2
CSTF2T
MEIS2
LRGUK
ASIP
SYBU
FTL
BAX
CBFA2T2
ATP1A4
PAX8
ITGB5
RPS24
POLR3A
DDAH1
TPRA1
CCN1
PSMB5
OLFML2A
NR6A1
LIFR
MPP4
DMBX1
GATA3
HERPUD1
PRUNE2
FABP7
AEN
CCDC9
WASHC3
TTYH1
BUB1
REC8
CTXN3
CWC22
SPCS1
GLT8D1
FKBP1A
TMEM123
UQCC2
CPN2
FAM3C
DPEP1
HES1
DEFA5
CHN2
CPVL
CCDC85A
TMEM107
USP17L19
ECM2
UNC5C
AGO1
FGF2
KCNN2
PPM1B
PRICKLE1
HAO1
LEF1
MYRIP
SH2D3C
LZTFL1
RAB11FIP1
ABCA5
PCBD2
WNT1
MSI2
SLC2A9
FOXB2
EML4
CERCAM
RBFOX2
VOPP1
ADNP2
MN1
DLL4
EIF2S1
ATP6V1D
ADO
MVB12A
BST2
EVX1
CDK15
MAMDC2
MTRNR2L1
WDR74
STX5
RARB
MTRNR2L2
MSH3
DHFR
EAPP
ID1
SOAT2
IGFBP6
CDX2
NOTCH2NLC
DHRS3
MTRNR2L8
RARA
SP2
ARID3B
VEZT
FGD6
SNAPC1
FZD8
CYP26A1
UNKL
NOTCH2
SPATC1L
C16orf91
PLAGL1
G6PC2
IER3
FLOT1
PDE4DIP
DUSP6
MUC20
ZNF775
NEUROD1
NDUFS7
ZSWIM1
SPATA25
NEURL2
CTSA
SH2B1
KCNN4
DPP9
TLE4
KAT6B
BNIP3
TBL2
USP29
ZFHX4
SEC22B
TPM1
ERCC1
TRIM65
GPR108
BBS9
BHLHE40
LBX1
TRIP10
MRPL38
PCGF1
FOXP1
ERRFI1
VSIR
AQP6
METTL24
NBAS
TTI2
RUNX1T1
LBX2
ARHGDIA
LIN28A
HOXA5
INSM1
P4HB
PHC2
PPP1R35
MLEC
CDCA7L
ASB2
FAM222A
TEPSIN
NDUFAF8
LPIN1
NBEAL2
CCDC12
ARHGAP24
FGF19
ADAM18
DAPL1
DNM2
PAH
ARID3C
TBX2
COL23A1
NCOA7
TAF12
CITED2
RHBDD3
EWSR1
S100A10
PPP6R3
HOXC4
CRYAA2
CRYAA
SP1
FBXO31
SYTL3
HPD
MINDY2
CS
FILIP1L
EXOC2
HUS1
MAP1LC3B
TMEM70
ELOC
DCTN3
ANKRD28
UNCX
FRA10AC1
RPS10-NUDT3
RPS10
SYNPO
AXDND1
SMAD3
HPCAL1
PDHB
ANK2
NFIA
ZFHX3
KIF21B
PKDCC
BAZ2A
ARSG
RPL22
RNF207
FXYD2
XKR7
DLX4
STX18
NPAS4
E4F1
CAMTA1
RAB5B
PMEL
CDK2
PPFIBP2
ITGB6
STAP2
CRABP2
TLE1
TNFRSF19
ARHGEF28
TMEM242
MRPL34
DDA1
ABHD8
HOXC6
PDE4D
DOLPP1
OTUD7B
KDM6B
ASB6
BAIAP2
KANSL3
FER1L5
ARRDC4
GPC6
PGK1
TMEM120B
SEPTIN9
DONSON
VIP
UPF3A
DYNLT1
ETAA1
ATP5F1B
FOXP2
MAB21L2
POR
ATF6
FRYL
SMPDL3A
POP5
JUP
PDZRN3
SH3BP2
ARHGAP22
NELFA
PC
CERK
EXOSC4
KATNB1
RBPJ
KCNAB2
BCL3
MRPL20
MYLK4
PANK2
PPCDC
TRIB1
NINJ2
RARG
PTK2B
BMF
CCDC174
IRF2BP2
FAM72C
RHBDD1
SNX16
SQSTM1
CLCN3
TMEM101
CCNL2
ABHD2
SREBF1
GPCPD1
QPRT
SRSF11
ADAP1
SMARCD2
GATA4
SIRT4
NOTCH2NLB
NOTCH2NLA
MFSD10
MTMR4
MALRD1
PRKAG2
MIDEAS
ELOVL5
TOP2A
ABCC10
HEXIM2
TMEM9
SLX1B
SLX1A
LFNG
BOLA2B
BOLA2
ZNF687
SMG6
ZNF718
ZNF595
NBPF1
ZNF367
ZFP36
PLEKHG2
SACM1L
PSMB3
PCGF2
CNOT2
TRIM46
KRTCAP2
RASSF5
NRL
ATP1A1
NOL4L
CALM2
FURIN
MUC3A
MRPL3
HNRNPA2B1
CBX3
SPG7
KAT7
RNF34
HSPA1L
HSPA1A
SLC35E3
PCNA
RABGAP1L
MRPS31
EIF1B
CBX5
INHBE
GLI1
ANGPTL4
PSPN
ALKBH7
DACT2
RPL34
TLX2
DLC1
ASXL3
PPP1R18
NRM
SMIM28
RFX1
SOCS3
LRRC40
KAZALD1
ITGAV
C9orf92
ARHGAP30
THOP1
SGTA
POLDIP3
NUBP1
HNMT
NFKBIA
RHOQ
ATP6V1E2
TRAF7
EIF2AK3
FAM72D
ZFAND2A
STIP1
GTF3A
OSBP
SHC1
GRIK2
STAT1
PRDM10
RNF103-CHMP3
RMND5A
RPS7
ASCL1
DNAH1
IL17RD
ZNF77
SKI
ZNF740
DCAF11
CSAD
SHF
TRIM7
ATP1B1
MYBPC3
PSMD6
RAB26
SSBP4
RPLP1
STARD13
TRIM26
CLDN11
HAND1
KNL1
ARRDC2
CDS2
IQSEC3
SEPTIN4
GPR20
ZC3H3
SOD2
TRIM41
SERPINE1
ME3
ACYP1
PXYLP1
NR2F6
AHDC1
BRMS1
RBBP7
GADD45A
MDM2
GOT1
ECE1
SLC45A4
CCL26
RAB37
KMT5A
BORCS6
LPCAT3
HMGCS1
CAPNS2
IKBKB
CAPG
KDM8
TNFAIP2
SLC34A3
RGS3
CSF3R
DLG2
TCP10L
SPRED2
NLK
EMP3
SMIM20
TRIB3
POLG
TPCN1
ZNF564
RGS12
LMOD1
ANKHD1-EIF4EBP3
ANKHD1
STX1A
RTN4
PDP2
LMO4
NCOA2
BAHCC1
ART1
TCTEX1D4
PLK3
BTBD19
RAB11B
G3BP1
SOCS2
ADM
SCGB1A1
COL21A1
B4GAT1
LIG3
GLRX5
MACROH2A1
EVA1A
SLC35E2B
SH2D6
ZNF827
DSCAML1
CRLS1
MBD6
DDIT3
SLC7A5
ZC2HC1C
HTR1F
NEK1
METRN
FAM107B
HNRNPD
SYNJ2
MYEOV
KBTBD11
MNT
SCHIP1
CORO1A
ELL
TMEM94
BFSP1
MOB3A
IZUMO4
RBM15
NHLRC1
PNKD
GMEB2
MIDN
ARHGEF3
IFI16
JUNB
CNPY3
METTL3
MTF2
FST
PKN2
SIT1
CCDC43
PRMT5
KDM3A
ANTKMT
CNKSR3
DAGLB
UBE2F
PLA2G2A
CTSW
EIF3D
WSB2
INAVA
LCK
FAM167B
ARID5A
NEK3
ETF1
CSNK1D
MPND
SORL1
MRS2
SHB
KIF5C
BCAR3
SLC25A25
SLC6A12
CLDN9
PYGL
IGFBP7
TESC
SLC19A1
NCDN
KIAA0319L
KIAA1549
MRPS28
FGR
UBC
PPFIBP1
NKX1-1
TXNRD1
SCARB1
ZBTB18
SH3BP1
INKA2
CMSS1
ARID2
LRRC45
CENPX
NAGLU
TACC1
SLC30A4
LINGO1
PLEC
TUBA1C
KLF16
CYP51A1
ARAP1
PCM1
MMD
ATP6V1G3
ABCA4
TLN1
CREB3
HNRNPL
COX5A
SH3YL1
ACP1
METTL26
SORBS2
SPOCK2
PGP
ARID4A
RNPEPL1
DUSP28
ANKMY1
H4C14
H3C15
H3C14