ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584313 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◣ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

PSMD1
LOC102724770
DGCR6
IPO13
RABL2A
RWDD1
RABL2B
VDAC2
ZNF335
CACTIN
MAPKAPK5
TAOK3
SUDS3
POLR3F
DZANK1
DYNC1LI2
NME6
DUX4
HSPA9
NUP205
NUP85
FRG2C
VTI1B
EXOSC5
BCKDHA
C19orf48
RPL21
FAM187A
EFTUD2
CCDC103
POLR2E
GPX4
PSMG2
CEP76
S1PR4
NCLN
NVL
TBCK
AIMP1
ZRANB2
STAM2
GOSR2
MRPS7
MIF4GD
GGA3
SRD5A1
NSUN2
TLE6
FARSB
NNAT
BLCAP
PES1
LYRM4
FARS2
ATP5MG
CAPRIN1
STAM
TSNAX
DCTN1
REXO1
ACTR10
SEC61B
SKP1
UPF2
SUPV3L1
PNO1
GOLGA5
DPH6
RPS23
ATP6AP1L
RABGGTB
HADHB
HADHA
RPL35A
IQCG
LMLN
TTC8
UFM1
RBBP5
ZNF576
IRGQ
PSMD12
PI4KB
SLC35B1
ADK
AP3M1
VARS1
ICE1
PAK1IP1
C6orf52
USP1
NDUFA4
SFI1
EIF4ENIF1
ANAPC7
SMC2
ZNF503
HOXA3
HOXA4
COX7A2L
TSN
SART3
ISCU
PDAP1
BUD31
MRPS5
TMED1
SELENOF
HS2ST1
RPS27A
CLHC1
MRPL11
PROSER1
NHLRC3
FRG2
PCBP1
PIP4P1
OSGEP
APEX1
C6orf47
APOM
BAG6
SF3B3
COG4
FAM104A
C17orf80
UBE2I
RPS12
TLE1
HSPA1B
NOTCH2NLC
NOTCH2
DNAJB7
XPNPEP3
ST13
RBKS
BABAM2
NFKBIL1
DDX39B
ATP6V1G2
ARF1
PAF1
MED29
DMRT3
RND3
RPS29
LRR1
BICRA
ANKLE2
EIF2S3
TM9SF1
IPO4
CCDC200
COMMD1
CCT4
NEUROD1
ABCG2
NFIA
PIN4
KITLG
ARL4D
PLAGL1
WNT1
POU2F2
TMEM143
SYNGR4
ARHGAP11A-SCG5
ARHGAP11A
PARP11
LRATD2
PAX3
ITGB6
OR6B2
NDUFA10
RPL7
RDH10
MSX1
RAB11FIP1
PDE1A
SUCLG1
RHBDD3
EWSR1
MUC20
HOXA1
HOXA2
ARHGAP22
PPP1R1B
SEC11C
GTF3C4
DDX31
TMEM120B
NCOR2
CITED2
SEC22B
TAF9
RAD17
AK6
GRIK2
FGD3
GADD45GIP1
RPL34
PTGES2
GJA8
MRPL3
ALDH1A2
LZTS1
LAMA4
ZFHX4
G6PC2
EVX2
ZNF285
NRARP
KCNK16
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
FZD8
ICMT
HES3
SOGA3
PDE1B
GUCY2C
OAZ3
TLE4
NEUROG1
MRTO4
EMC1
C1orf105
USP17L21
USP17L20
USP17L12
USP17L22
DENND11
WEE2
HES1
PDE4DIP
PKHD1
ZFHX2
THTPA
AP1G2
CDC73
MYRF
MYH2
STK36
RNF25
SPRR1A
BRINP1
TMEM70
ELOC
CDPF1
HOXA5
SH3BP5
SKIL
SNAPC1
PIGX
CEP19
FOXP2
COL17A1
C10orf90
CNPY2
TMEM72
CHD7
DDAH1
HOXB3
CCN1
HOXB4
MEF2C
NEUROG2
GSX2
PAM
MTRF1
MSX2
FOXB2
PALM2AKAP2
RPN1
QPRT
TMEM242
NR2F1
LRIG3
CABP7
GLRA1
FGF19
SPTBN1
AGMO
ACSS3
HDAC9
ARHGAP24
VAV3
VIM
TRNP1
SMARCA2
ANK2
SGPP2
CLDN11
PIPOX
TRIL
UNCX
SLA
DHRS3
SEMA4D
CCDC9
ZNF585B
ZNF383
SPCS1
GLT8D1
PRDM13
MYLK4
USP17L13
USP17L11
USP17L18
USP17L10
SMUG1
PDE6B
FREM1
DPYD
LAMB4
ASXL3
RARB
TRIM65
MRPL38
ADAM18
SERINC5
ZNF608
HMX2
BUB3
GORAB
TPO
TRABD2B
ATOH8
BECN2
DAPL1
MED4
ID1
AXDND1
CD69
GALNTL6
TLE3
USP17L17
USP17L15
VEZT
FGD6
CBFA2T2
BNIP3
PRM3
PRM1
TNP2
RAI14
IKBKB
SH3RF2
WDR74
STX5
BTBD1
FABP7
SMPDL3A
HOXB5
SLC2A9
GMPR
C5orf63
GNG12
KCNK10
GPSM1
CTXN3
KBTBD8
ATP2C2
PDHX
APIP
GAS2L3
METRN
ANTKMT
ETS1
HSPA6
ATP1A4
WDPCP
PCBD2
SCGB1A1
CEBPA
CRYAA2
CRYAA
PPFIBP2
FMN1
CS
INSC
SDK2
ATP6V1G3
SLC26A2
PCDH1
TRMT9B
REC8
CEBPD
ALDH1B1
KCNIP4
TANC1
MRGPRX3
LRRC10
SLAMF8
DLG2
GALNT14
NELFA
FRMD7
RPH3A
ID2
ZGPAT
ARFRP1
CEP41
FMN2
FRMD4A
HMX3
MAMDC2
MTRNR2L1
TSSK4
NEUROG3
MTRNR2L2
MSH3
DHFR
PDE12
EAPP
DUSP29
SOAT2
IGFBP6
CDX2
MBTPS1
MTRNR2L8
LARP7
RARA
SP2
ARID3B
CYP26A1
UNKL
SPATC1L
ARHGAP10
SYBU
C16orf91
NFE2
PMAIP1
CCDC33
IER3
FLOT1
DUSP6
H2BU1
H2AW
ZNF775
TMEM107
NDUFS7
ZP4
ZSWIM1
SPATA25
NEURL2
CTSA
SH2B1
KCNN4
ATOH1
DPP9
IGFBP2
KAT6B
TBL2
USP29
TPM1
ERCC1
GPR108
LEFTY2
BBS9
BHLHE40
LBX1
TRIP10
CDH18
PCGF1
FOXP1
ERRFI1
PHOX2B
VSIR
AQP6
HOXB1
METTL24
NBAS
TTI2
RUNX1T1
LBX2
ARHGDIA
ST18
LIN28A
TBX3
INSM1
P4HB
TLE2
ZNF746
PHC2
PPP1R35
MLEC
CDCA7L
ASB2
FAM222A
TEPSIN
NDUFAF8
LPIN1
NBEAL2
CCDC12
DNM2
TPRA1
PAH
ARID3C
TBX2
ALKBH5
COL23A1
NCOA7
NHS
TAF12
S100A10
SLC39A7
RXRB
HSD17B8
ADNP2
DLL4
PPP6R3
HOXC4
SP1
PRUNE2
FBXO31
URM1
SYTL3
HPD
MINDY2
SP5
FILIP1L
EXOC2
HUS1
MAP1LC3B
DCTN3
H2BC17
H2AC17
ANKRD28
FRA10AC1
COL11A2
RPS10-NUDT3
RPS10
SYNPO
SMAD3
HPCAL1
PDHB
CNTN1
ZFHX3
KIF21B
PKDCC
CLGN
BAZ2A
ARSG
RPL22
RNF207
FXYD2
XKR7
DLX4
STX18
NPAS4
E4F1
CAMTA1
RAB5B
PMEL
CDK2
ID3
CHN2
STAP2
CRABP2
TNFRSF19
ARHGEF28
MRPL34
DDA1
ABHD8
HOXC6
PDE4D
CPVL
DOLPP1
OTUD7B
KDM6B
ASB6
BAIAP2
KANSL3
FER1L5
ARRDC4
KDM2B
GPC6
PGK1
SEPTIN9
DONSON
ABLIM3
VIP
UPF3A
DYNLT1
ETAA1
ATP5F1B
MAB21L2
POR
ATF6
FRYL
CERCAM
POP5
JUP
PDZRN3
SH3BP2
PRRX1
CADM3
PC
CERK
EXOSC4
KATNB1
RBPJ
RPS24
POLR3A
KCNAB2
BCL3
MRPL20
PANK2
PPCDC
TRIB1
NINJ2
MEIS2
RARG
PTK2B
BMF
CCDC174
IRF2BP2
FAM72C
RHBDD1
SNX16
SQSTM1
CLCN3
TMEM101
CCNL2
MBNL3
ABHD2
SREBF1
GPCPD1
SRSF11
ADAP1
RING1
SMARCD2
GATA4
SIRT4
NOTCH2NLB
NOTCH2NLA
MFSD10
MTMR4
MALRD1
PRKAG2
MIDEAS
ELOVL5
TOP2A
ABCC10
HEXIM2
TMEM9
SLX1B
SLX1A
LFNG
BOLA2B
BOLA2
ZNF687
SMG6
ZNF718
ZNF595
NBPF1
ZNF367
ZFP36
PLEKHG2
SACM1L
PSMB3
PCGF2
CNOT2
TRIM46
KRTCAP2
RASSF5
NRL
ATP1A1
NOL4L
CALM2
FURIN
MUC3A
HNRNPA2B1
CBX3
SPG7
KAT7
RNF34
HSPA1L
HSPA1A
SLC35E3
PCNA
RABGAP1L
MRPS31
EIF1B
CBX5
INHBE
GLI1
ANGPTL4
PSPN
ALKBH7
DACT2
TLX2
ECEL1
DLC1
PPP1R18
NRM
SMIM28
RFX1
SOCS3
LRRC40
KAZALD1
ITGAV
C9orf92
ARHGAP30
THOP1
SGTA
POLDIP3
NUBP1
HNMT
NFKBIA
RHOQ
ATP6V1E2
TRAF7
EIF2AK3
FAM72D
ZFAND2A
STIP1
GTF3A
NAV3
OSBP
SHC1
STAT1
PRDM10
RNF103-CHMP3
RMND5A
RPS7
ASCL1
DNAH1
IL17RD
ZNF77
SKI
ZNF740
DCAF11
CSAD
SHF
TRIM7
ATP1B1
MYBPC3
PSMD6
RAB26
SSBP4
RPLP1
STARD13
TRIM26
HAND1
KNL1
ARRDC2
CDS2
IQSEC3
GADD45G
SEPTIN4
GPR20
ZC3H3
SOD2
TRIM41
SERPINE1
ME3
ACYP1
PXYLP1
NR2F6
AHDC1
BRMS1
RBBP7
GADD45A
MDM2
GOT1
ECE1
SLC45A4
CCL26
RAB37
KMT5A
BORCS6
LPCAT3
HMGCS1
CAPNS2
AGO1
CAPG
KDM8
TNFAIP2
SLC34A3
RGS3
CSF3R
TCP10L
SPRED2
NLK
EMP3
SMIM20
TRIB3
POLG
TPCN1
ZNF564
CBX4
RGS12
LMOD1
ANKHD1-EIF4EBP3
ANKHD1
STX1A
RTN4
FTL
PDP2
LMO4
NCOA2
BAHCC1
ART1
TCTEX1D4
PLK3
BTBD19
RAB11B
G3BP1
SOCS2
ADM
COL21A1
B4GAT1
LIG3
MYRIP
GLRX5
MACROH2A1
EVA1A
SLC35E2B
GRSF1
SH2D6
ZNF827
DSCAML1
CRLS1
MBD6
DDIT3
SLC7A5
ZC2HC1C
RBFOX2
HTR1F
NEK1
TCF7L2
FAM107B
HNRNPD
SYNJ2
MYEOV
KBTBD11
MNT
SCHIP1
CORO1A
HOXD3
ELL
TMEM94
BFSP1
MOB3A
IZUMO4
RBM15
NHLRC1
PNKD
GMEB2
METTL11B
MIDN
ARHGEF3
IFI16
JUNB
CNPY3
METTL3
MTF2
FST
PKN2
SIT1
CCDC43
PRMT5
KDM3A
CNKSR3
DAGLB
UBE2F
PLA2G2A
CTSW
EIF3D
WSB2
TMEM212
INAVA
RFX2
UNC5A
LCK
FAM167B
NKD1
ARID5A
NEK3
CPSF4L
ETF1
CSNK1D
MPND
SORL1
MRS2
SHB
KIF5C
BCAR3
SLC25A25
SLC6A12
CLDN9
PYGL
IGFBP7
TESC
SLC19A1
NCDN
KIAA0319L
KIAA1549
MRPS28
FGR
UBC
PPFIBP1
NKX1-1
TXNRD1
SCARB1
ZBTB18
SH3BP1
INKA2
CMSS1
ARID2
LRRC45
CENPX
NAGLU
TACC1
SLC30A4
LINGO1
PLEC
TUBA1C
KLF16
CYP51A1
ARAP1
PCM1
MMD
ABCA4
TLN1
CREB3
CHODL
HNRNPL
H3C12
COX5A
SH3YL1
ACP1
METTL26
SORBS2
SPOCK2
PGP
ARID4A
RNPEPL1
DUSP28
ANKMY1
H4C14
H3C15
H3C14
LOC102724265
SEC14L1
NCS1
DMD
MYO1B
LNPEP
FRMD3
UGP2
FOXA3
SCNN1A
LTBR
CCDC107
ARHGEF39
NRXN1
NR1D1
EIF4H
RNF149
HMGB1
ITGB2
CAND1
LIMA1
RPS6KA1
UACA
NAA10
ARHGAP4
KMT2A
TRIM2
KIF3B
NAV2
CSRNP1
STIL
TRDMT1
EVI5L
RNF144A
BOLA2-SMG1P6
ANKRD39
KIAA0319
IL23R
STX16
PHB
CPT1A
ALOX5AP
PRR14
FBRS
DMBX1
ARHGEF10L
OTX1
NRCAM
INAFM2