ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX21236746 | IMR-32
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◣ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

RWDD1
NUP85
FAM187A
EFTUD2
CCDC103
PSMD12
ZNF335
HADHB
HADHA
GOSR2
MRPS7
MIF4GD
GGA3
TAOK3
SUDS3
RABL2B
POLR3F
DZANK1
RABL2A
NVL
TSN
RPS12
NNAT
BLCAP
MAPKAPK5
PAK1IP1
C6orf52
CACTIN
RBBP5
POLR2E
GPX4
RPS27A
CLHC1
VTI1B
SLC35B1
TSNAX
EXOSC5
BCKDHA
PNO1
REXO1
NME6
ZRANB2
S1PR4
NCLN
NUP205
SART3
ISCU
RABGGTB
PSMD1
DCTN1
LYRM4
FARS2
USP29
FAM104A
C17orf80
COX7A2L
VARS1
C19orf48
HSPA9
PI4KB
SELENOF
HS2ST1
PES1
SEC61B
STAM
OAZ3
GOLGA5
VDAC2
RPL21
COMMD1
CCT4
RPL35A
IQCG
LMLN
TMED1
UPF2
TMEM101
TTC8
FARSB
DNAJB7
XPNPEP3
ST13
NDUFA4
LOC102724770
DGCR6
MRPL11
ATP5MG
SUPV3L1
PSMG2
CEP76
TBCK
AIMP1
USP1
ZNF576
IRGQ
MRPS5
DYNC1LI2
C6orf47
APOM
BAG6
SMC2
UFM1
ACTR10
CAPRIN1
IPO13
ANAPC7
DPH6
SRD5A1
NSUN2
STAM2
ATP6V1G3
PCBP1
RPS29
LRR1
PROSER1
NHLRC3
HSPA1B
RPS23
ATP6AP1L
SUCLG1
ETAA1
NFKBIL1
DDX39B
ATP6V1G2
DUX4
PAF1
MED29
CDC73
SFI1
EIF4ENIF1
GMEB2
PDAP1
BUD31
CRYBG3
ICE1
GAMT
MMD
ADK
AP3M1
ATP1A1
STK36
RNF25
RBKS
BABAM2
TAF9
RAD17
AK6
MLEC
UNKL
C16orf91
SKP1
PIN4
RPN1
MAMDC2
UBE2I
RPS10-NUDT3
RPS10
PIP4P1
OSGEP
APEX1
CERK
GORAB
ZBTB18
OR6B2
NDUFA10
SF3B3
COG4
BICRA
NRXN1
SEC11C
TRIM65
MRPL38
LIMA1
SLC35A3
KIF3B
GTF3C4
DDX31
PTGES2
XXYLT1
PCGF1
LBX2
TLX2
MRTO4
EMC1
NBEA
MAB21L1
BDNF
PCGF3
ARHGAP11A-SCG5
ARHGAP11A
METTL24
ZNF585B
ZNF383
KIAA0319
GADD45GIP1
RFX8
IFI44
CCDC43
AXDND1
IGFBPL1
CDH2
MYLIP
WDR74
STX5
SNRPD2
QPCTL
ALKBH5
NFATC4
TM9SF1
IPO4
TSSK4
APBA1
LRRC43
IL31
CDH7
UBAP2
RABGAP1L
AQP6
RUNX1T1
NPTN
RPS24
POLR3A
SMLR1
RPL7
RDH10
DUSP12
ANO3
CBFA2T2
AKNAD1
CDON
BAHCC1
SPCS1
GLT8D1
NHLH2
ANK3
PKN2
PRRT2
EYS
PAGR1
MVP
GBA
KAT7
EIF4H
DOCK10
CHN1
SRSF11
LRRC40
TIAM2
CSRNP3
PLSCR5
EAPP
DHX8
LY75-CD302
LY75
CHD8
TLE6
SSH1
NELFA
SUN1
WRAP53
TP53
MAST1
RTBDN
EIF2S3
MYCN
IDI1
PHOX2B
LAYN
TLE3
LRRC56
HRAS
PTPRO
SYBU
KREMEN1
TLE4
JDP2
FRMD6
SLC17A6
RPL36
MICOS13
HSD11B1L
DNASE1L2
ECI1
CNPY2
GK2
TCHP
HSD17B1
COASY
PPP1R35
ZCWPW1
MEPCE
MGARP
TSHR
RARA
MTRNR2L8
KIAA1549
IZUMO1R
SH3D19
CBX5
R3HCC1
TOMM20
RFX2
DLC1
CLTC
LEMD2
NRP1
ARL17B
RNASEK
ALOX12
EGFLAM
OPRM1
C8orf48
ADCYAP1
GTF3A
SLC35E3
RBM25
RARB
F7
CS
PELI2
MAN2C1
MLLT11
CDC42SE1
RUNDC3A
EBF3
GRK5
ANKLE2
PARP16
GATAD2A
TBC1D16
DACT1
CCDC40
ACVR1C
WDR7
OMD
DDX1
LRCOL1
P2RX2
BAZ2B
DGKZ
PTPN3
TNFRSF19
KRTAP3-2
KRTAP3-3
KRT40
SIRT4
HSPE1-MOB4
HSPE1
HSPD1
NBAS
CD79A
ARHGEF1
FOXP2
ACVR1
TCF4
ABCA12
HNRNPA2B1
CBX3
YTHDF2
FLRT3
RRM2
CLASP2
ELAVL4
NEUROD1
FAM162A
CCDC58
NAV2
ACOT11
CERKL
SOAT2
IGFBP6
GOLGA8Q
TIMM10
SMTNL1
ZNF521
MAD2L1BP
GTPBP2
RSPH9
CEP85L
DYRK1B
CMTR1
DENND1B
SATB1
SETD5
CCDC200
SLC24A1
MTMR14
NRG1
RNF111
CLVS1
MUC17
SLC26A1
IDUA
MAD2L2
H3Y2
ZNF217
DRAXIN
FGD4
TANC1
DR1
VMP1
PTRH2
MTF2
MDM1
ONECUT3
DBNDD1
SYNPO
FAM43A
PDHX
APIP
GRIP1
LTBP4
TRIM67
CDYL
LRATD1
SMAD5
TMEM210
LRRC26
CIPC
SLC26A11
IL26
MLF2
CCN6
GSTP1
IL6ST
CNNM2
HTR1F
CEP120
LIG3
GGA1
SPATA4
HEPACAM2
VPS50
ACTA2
MTHFD2L
ARL4D
UFSP2
C4orf47
MARCHF7
QRFPR
CCDC192
ZCCHC4
HUS1
EFCAB2
GRAMD1B
SMIM41
ATG101
DNAH8
COX7A2
INKA2
PAXBP1
TAS2R40
SSNA1
ANAPC2
B3GNT3
CDK15
RAB27B
FRZB
SCHIP1
PPP6R1
TMEM91
MGP
B9D2
TMEM38A
SMIM7
SMARCD2
RNF34
CCDC113
PHB
ATF7IP
RPS7
PCBP2
LOC100505841
TBC1D24
SCAF8
TEDC2
NTN3
CYTH3
HECTD3
SECISBP2L
TCP1
MRPL18
LYSMD2
SLC6A2
TSPAN11
TMOD2
H3Y1
CCDC174
PRDM10
MBD6
DDIT3
BAIAP2
AFF3
TPCN1
B9D1
SMAD7
MFAP4
MAPK7
PANK2
ZNRF3
BRD4
APLP1
ARL14EP
CD248
ARID2
RBM39
SEMA6D
USP9X
ZNF331
SLAIN1
ELAPOR1
GULP1
C1orf194
TRIM2
VIP
CTDSP1
FABP9
FBXO10
PMP2
MTRNR2L2
MSH3
DHFR
PLEKHA6
FYN
SF3B2
GAL3ST3
ZNF121
TMEM107
TXNDC11
DNAJC15
CACHD1
CYB561D1
ATXN7L2
FAM110A
SEPTIN6
KDM3A
CAPRIN2
ARIH1
THBS4
MTX3
SLC25A10
MRPL12
PPP1R17
UQCRC2
DLG4
ACADVL
KIAA1217
CASK
FRG2C
CAPNS2
SESN3
ITPR2
SORBS2
BRWD1
PPP1R11
POLR1H
IER5
KCNT2
STAT3
EML2
NCBP3
HEXIM2
PRPF3
TMEM244
C8B
ZFP36L1
IRAK1BP1
PARP2
CCNB1IP1
LGSN
BROX
AIDA
BMF
QPRT
CCDC68
ZNF496
PRKCSH
CCDC151
ACYP1
ZC2HC1C
SERTAD3
PDGFRA
ZPLD1
ZNF608
NUDCD3
TNPO2
COL23A1
USP32
ZNF444
MAP1B
RAD51D
FNDC8
KCNV2
NMRK2
TUBB
MDC1
PFKP
IGF2BP3
TMEM127
CIAO1
MYT1L
PAN2
IL23A
LARP7
CALM2
COPS4
DUS1L
ZNF787
PKIA
NRP2
SLC25A28
NKIRAS2
DNAJC7
SLC25A25
NAIF1
ARMC12
FKBP5
ZSCAN12
SPHK2
RPL18
FAM83E
DVL3
RPL26
KRBA2
HMGB1
RAD23A
CALR
ADGRL2
USPL1
FARSA
TMCC1
MSRB2
NOCT
NOP14
GRK4
DRAP1
C11orf68
ZBTB26
RABGAP1
NET1
NME1
POLL
DPCD
C9orf92
TLN1
CREB3
TRDMT1
CDC42EP2
GIT1
ANKRD13B
ELF1
WBP4
NUCKS1
RPS26
PRICKLE1
FAM222B
EPHA7
PRR14
FBRS
PRPF40B
CHGA
TMEM259
CNN2
RUNDC1
PTGES3L-AARSD1
PTGES3L
RPRM
GOLGA8O
LDLRAD4
SKP2
LMBRD2
EBF1
PRDX2
TLX3
RNASEH2A
TMEM167B
RAD52
OCA2
BAZ2A
ATP5F1B
CTBP2
CIC
HPF1
PDZRN3
ACTB
ZMYM2
LDB3
ARL10
KIAA1191
SOX11
PCBD2
FER
SLC29A4
RBMS3
B3GALT2
GOLGA8R
PDE12
PITPNB
RFTN1
ZNF76
NEFH
PDE6B
ZBED9
PRCD
CYGB
SAMD10
PRPF6
ADRM1
NFIB
SMIM18
ZSWIM1
SPATA25
NEURL2
CTSA
POLDIP3
TMEM60
PHTF2
MRPS23
RGS14
LMAN2
FNTA
DST
TBPL1
UBE2Z
BEND6
PANK3
MARCHF11
SOX4
FBXW7
ST6GALNAC2
H4C12
H4C11
H2BC15
H2AC15
LOC101929372
PLEKHG7
ALMS1
SSBP3
RBM4
ASF1A
NCAM1
RCOR1
TNFSF18
TMBIM4
UBB
MAP3K3
RAB30
CCKAR
PSME3IP1
RSPRY1
MRGBP
TRAP1
CDKN2AIPNL
MON1A
RBM6
OGFR
TAF13
ZNF629
PARP9
DTX3L
PRPF8
CROCC
PRPSAP1
TAF12
ARHGAP19
COPS7A
SDCCAG8
CEP170
HNMT
UCHL5
RO60
OAZ1
RPS27L
RALYL
SNX9
ZDHHC4
C6orf89
DHX35
PNPLA1
ID2
SH2B1
METTL25
CCDC59
TOB1
LETMD1
POLG
MFSD11
SRSF2
PKM
EIF4A3
DIS3L
STK32B
NHLH1
CELF1
CDIPT
GTF3C5
PRKAG2
HCFC2
GLT8D2
NAP1L1
CKAP4
SACM1L
CHD9
KHK
EMILIN1
OST4
SLIT1
H1-10
C18orf25
RTP5
IFI35
TYRP1
RPL27
RPAIN
NUP88
C3orf52
NREP
KRTAP10-5
KRTAP10-4
GARNL3
FRG2
CLIC4
MCC
CCDC178
MCL1
DNAL4
ACTG1
HNRNPD
PTPN6
C12orf57
GPR88
WDPCP
MDH1
ID1
GAA
RPL7L1
TP53BP1
MAP1A
TMEM94
NUMA1
LRTOMT
MMP20
PTPN13
TWIST1
TOB2
CST6
EIF1AD
BANF1
ASH2L
SDHAF4
SDE2
DDX23
KEAP1
DCLRE1B
AP4B1
SLC16A3
CECR2
AFAP1
SEZ6L2
ASPHD1
RACK1
LIMS1
LNPEP
PMEPA1
EFNB1
SRP9
XKR7
MAP3K14
CDC42EP3
SRGAP3
SLA
SFXN2
ARL3
BLOC1S5
ZNF503
MTRNR2L1
NEUROG2
ZGPAT
ARFRP1
PPP1R1B
NEUROG3
HES1
HOXA3
ARF1
ICMT
HES3
HOXA4
WNT1
HOXA1
DUSP29
CDX2
NOTCH2NLC
SKIL
MBTPS1
DHRS3
GLRA1
SP2
ARID3B
VEZT
FGD6
SNAPC1
FZD8
CYP26A1
NOTCH2
SPATC1L
ARHGAP10
NR2F1
PLAGL1
NFE2
G6PC2
PMAIP1
CCDC33
IER3
FLOT1
HOXA2
PALM2AKAP2
PDE4DIP
DUSP6
MUC20
H2BU1
H2AW
ZNF775
NDUFS7
ZP4
SERINC5
KCNN4
NEUROG1
ATOH1
RAB11FIP1
DPP9
IGFBP2
LZTS1
KAT6B
BNIP3
TBL2
ZFHX4
SEC22B
TPM1
ERCC1
GPR108
LEFTY2
BBS9
BHLHE40
LBX1
TRIP10
CDH18
DDAH1
FOXP1
ERRFI1
VSIR
HOXB1
TTI2
ARHGDIA
ST18
LIN28A
TBX3
HOXA5
INSM1
P4HB
TLE2
ZNF746
ETS1
PHC2
CDCA7L
ASB2
FAM222A
TEPSIN
NDUFAF8
LPIN1
NBEAL2
CCDC12
ARHGAP24
FGF19
ADAM18
DAPL1
DNM2
TPRA1
PAH
ARID3C
TBX2
NCOA7
NHS
CITED2
HOXB3
RHBDD3
EWSR1
S100A10
SLC39A7
RXRB
HSD17B8
ADNP2
DLL4
PPP6R3
HOXC4
CRYAA2
CRYAA
SP1
PRUNE2
FBXO31
URM1