ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX21236746 | IMR-32
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◣ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

RWDD1
NUP85
FAM187A
EFTUD2
CCDC103
PSMD12
ZNF335
HADHB
HADHA
GOSR2
MRPS7
GGA3
TAOK3
SUDS3
RABL2B
POLR3F
DZANK1
RABL2A
TSN
NVL
RPS12
BLCAP
MAPKAPK5
CACTIN
PAK1IP1
C6orf52
RBBP5
POLR2E
RPS27A
CLHC1
VTI1B
SLC35B1
EXOSC5
BCKDHA
TSNAX
PNO1
REXO1
NME6
ZRANB2
NCLN
NUP205
SART3
ISCU
RABGGTB
DCTN1
LYRM4
FARS2
FAM104A
C17orf80
PSMD1
COX7A2L
VARS1
HSPA9
C19orf48
SELENOF
HS2ST1
PI4KB
PES1
SEC61B
ALG2
STAM
OAZ3
MRPL9
GOLGA5
RPL21
VDAC2
COMMD1
CCT4
IQCG
RPL35A
TMEM101
TMED1
UPF2
FARSB
XPNPEP3
ST13
DNAJB7
TTC8
NDUFA4
PSMG2
CEP76
ATP5MG
SUPV3L1
TBCK
AIMP1
USP1
ZNF576
IRGQ
MRPS5
DYNC1LI2
APOM
BAG6
SMC2
ACTR10
UFM1
IPO13
CAPRIN1
ANAPC7
DPH6
SRD5A1
STAM2
PCBP1
RPS29
LRR1
PROSER1
NHLRC3
CD24
RPS23
ATP6AP1L
SUCLG1
NFKBIL1
DDX39B
ATP6V1G2
PAF1
CDC73
EIF4ENIF1
GMEB2
CRYBG3
ICE1
PDAP1
BUD31
ADK
AP3M1
STK36
RNF25
BABAM2
RBKS
TAF9
RAD17
AK6
MLEC
RPN1
C16orf91
PIN4
SKP1
UBE2I
CERK
RPS10-NUDT3
RPS10
OSGEP
APEX1
GORAB
OR6B2
NDUFA10
ZBTB18
BICRA
NRXN1
SEC11C
SF3B3
COG4
PTGES2
MRPL38
SLC35A3
LIMA1
GTF3C4
DDX31
XXYLT1
PCGF1
LBX2
MRTO4
EMC1
PCGF3
ARHGAP11A-SCG5
ARHGAP11A
METTL24
ZNF383
CCDC43
GADD45GIP1
KIAA0319
RFX8
IFI44
AXDND1
SNRPD2
QPCTL
IGFBPL1
MYLIP
APBA1
ALKBH5
NFATC4
TM9SF1
HSPA1B
LRRC43
CDH7
UBAP2
SMLR1
RPS24
POLR3A
RPL7
RDH10
CBFA2T2
DUSP12
ANO3
BAHCC1
SPCS1
GLT8D1
AKNAD1
MTRNR2L8
CDON
NHLH2
ANK3
GBA
PKN2
PRRT2
MVP
PAGR1
EYS
EIF4H
TIAM2
CHN1
SRSF11
LRRC40
CHD8
NELFA
WRAP53
TP53
EIF2S3
RTBDN
MYCN
MAST1
PHOX2B
TLE3
SYBU
HRAS
CNPY2
TLE4
FRMD6
JDP2
MICOS13
HSD11B1L
ECI1
TSHR
GK2
TCHP
HSD17B1
MGARP
RARA
ZCWPW1
MEPCE
CBX5
R3HCC1
TOMM20
OPRM1
CLTC
LEMD2
NRP1
C8orf48
RARB
S1PR4
RBM25
CS
F7
PELI2
MAN2C1
ANKLE2
MLLT11
CDC42SE1
RUNDC3A
EBF3
GRK5
GATAD2A
TBC1D16
CCDC40
ACVR1C
CCDC200
DDX1
OMD
TNFRSF19
LRCOL1
P2RX2
DGKZ
BAZ2B
PTPN3
KRTAP3-3
SIRT4
HSPE1-MOB4
HSPE1
HSPD1
CLASP2
ARHGEF1
FAM162A
CCDC58
ACVR1
HNRNPA2B1
CBX3
TCF4
ABCA12
YTHDF2
RRM2
FLRT3
ELAVL4
MAD2L1BP
IGFBP6
SOAT2
TIMM10
ZNF521
MTMR14
CEP85L
DYRK1B
RUNX1T1
CMTR1
SATB1
SETD5
SLC24A1
INTS14
NRG1
CLVS1
IDUA
ZNF217
VMP1
PTRH2
TANC1
MTF2
SMAD5
MDM1
GSTP1
DBNDD1
SYNPO
PDHX
APIP
GRIP1
GGA1
LTBP4
CIPC
SLC26A11
SGSH
TMEM210
LRRC26
MLF2
IL26
IL6ST
CNNM2
CEP120
LIG3
SPATA4
VPS50
HEPACAM2
ACTA2
UFSP2
C4orf47
MTHFD2L
MARCHF7
COX7A2
ZCCHC4
GOLGA8Q
HUS1
EFCAB2
FRZB
FRG2C
TMEM91
INKA2
ATG101
PAXBP1
SSNA1
ANAPC2
B3GNT3
TCP1
MRPL18
RAB27B
PPP6R1
MGP
TMEM38A
SMIM7
SMARCD2
NCAPG
DHX8
PCBP2
ATF7IP
RPS7
LOC100505841
SECISBP2L
SCAF8
NTN3
CYTH3
CCDC174
PRDM10
MBD6
DDIT3
TSPAN11
MTRNR2L2
MSH3
DHFR
UROD
HECTD3
BAIAP2
TPCN1
AFF3
SMAD7
MFAP4
PANK2
BRD4
ARL14EP
APLP1
ARID2
CD248
PWWP3A
USP9X
CHRNA3
GULP1
CTDSP1
ELAPOR1
C1orf194
ZNF331
VIP
FYN
ARIH1
ZNF121
GOLGA8R
TMEM107
PLEKHA6
SF3B2
GAL3ST3
CYB561D1
TXNDC11
ETAA1
FAM110A
HEXIM2
KDM3A
PPP1R17
UQCRC2
MRPL12
DLG4
ACADVL
KIAA1217
CASK
SORBS2
POLR1H
SESN3
ITPR2
ZNF496
BRWD1
NUDCD3
KCNT2
STAT3
PRPF3
TMEM244
USP32
TMEM127
ZFP36L1
NCBP3
CIAO1
CAPRIN2
IRAK1BP1
QPRT
PARP2
LGSN
BROX
AIDA
BMF
SERTAD3
CCDC68
PDGFRA
PRKCSH
CCDC151
TMCC1
CSRNP3
RAD51D
FNDC8
MAP1B
ZNF608
TUBB
IGF2BP3
MDC1
PAN2
IL23A
TNPO2
NMRK2
COL23A1
MYT1L
CALM2
RPS26
COPS4
DUS1L
ZNF787
NKIRAS2
DNAJC7
SLC25A25
FKBP5
NAIF1
SLC25A28
RPRM
NOCT
FAM83E
SPHK2
RPL18
RPL26
HMGB1
USPL1
FARSA
CALR
DVL3
ZSCAN12
GFRA2
MSRB2
ZBTB26
NET1
NOP14
GRK4
NME1-NME2
NME1
TRDMT1
GIT1
ANKRD13B
DUX4
WDR74
TLN1
CREB3
ELF1
CDC42EP2
WBP4
DRAP1
C11orf68
PRR14
NUCKS1
TMEM259
PTGES3L-AARSD1
PTGES3L
FAM222B
RUNDC1
LDLRAD4
SCHIP1
EBF1
RAD52
CTBP2
RNASEH2A
PRDX2
CIC
BAZ2A
OCA2
PCBD2
ZNF397
ACTB
LDB3
ZMYM2
KIAA1191
ARL10
SOX11
B3GALT2
RFTN1
RBMS3
PDE12
ZNF76
PDE6B
SAMD10
PRPF6
PRCD
ADRM1
NCAM1
NFIB
UBB
SMIM18
POLDIP3
TMEM60
PHTF2
TBPL1
UBE2Z
SPATA25
NEURL2
CTSA
MRPS23
MAP3K3
FNTA
RAB30
LMAN2
FBXW7
H4C12
SSBP3
ALMS1
RBM4
PLSCR5
TMBIM4
PRPF8
TLX2
RCOR1
TNFSF18
PSME3IP1
PARP9
DTX3L
TRAP1
TMEM205
CCDC159
CDKN2AIPNL
PRPSAP1
RBM6
OGFR
ZNF629
SDCCAG8
CEP170
HNMT
COPS7A
OAZ1
RPS27L
ZDHHC4
TOB1
C6orf89
SH2B1
PNPLA1
ID2
GTPBP6
POLG
SRSF2
MFSD11
PKM
EIF4A3
DIS3L
DLC1
NHLH1
SACM1L
NAP1L1
PRKAG2
CDIPT
GTF3C5
HCFC2
GLT8D2
EMILIN1
CKAP4
CHD9
H1-10
FRG2
C3orf52
PTPN6
TYRP1
RPL27
C12orf57
RPAIN
NUP88
C18orf25
KRTAP10-5
NREP
MCC
MCL1
CLIC4
CCDC178
DNAL4
WDPCP
MDH1
HNRNPD
GAA
ID1
SDE2
TP53BP1
TMEM94
NUMA1
LRTOMT
PTPN13
FBXO22
MMP20
EIF1AD
BANF1
SDHAF4
GARNL3
TOB2
DDX23
SLC16A3
DCLRE1B
AP4B1
SEZ6L2
ASPHD1
AFAP1
RACK1
LNPEP
LIMS1
SRP9
EFNB1
PMEPA1
SLA
ATP6V1G3
SLC25A6
CDC42EP3
SRGAP3
SFXN2
ARL3
ZNF503
MTRNR2L1
NEUROG2
ZGPAT
ARFRP1
NEUROG3
HES1
HES3
SKIL
HOXA4
CDX2
SPATC1L
CYP26A1
VEZT
FGD6
ARID3B
FZD8
NFE2
HOXA3
PMAIP1
IER3
FLOT1
SP2
ARHGAP10
NDUFS7
DHRS3
ZP4
NEUROG1
ATOH1
NEUROD1
KAT6B
DPP9
BNIP3
ERCC1
LEFTY2
BBS9
IGFBP2
LBX1
TPM1
TRIP10
GPR108
H2AW
TTI2
HOXA2
ST18
HOXA1
TBX3
LIN28A
ASB2
ZNF746
INSM1
DUSP6
CCDC33
CDCA7L
TEPSIN
NDUFAF8
ERRFI1
DNM2
FGF19
TPRA1
FOXP1
HOXB3
P4HB
TBX2
FBXO31
NPAS4
MINDY2
HPD
PRUNE2
ANKRD28
DLL4
SP5
TMEM70
ELOC
PDE4D
PDHB
SMAD3
CCNDBP1
MRPL34
DAPL1
CLGN
LPIN1
ARHGEF28
CAMTA1
RAB5B
ID3
KANSL3
FER1L5
TMEM120B
KIF21B
STX18
DCTN3
DLX4
TLE1
XKR7
ZFHX3
RXRB
PHC2
DONSON
DOLPP1
ARID3C
ARRDC4
ANK2
HOXC4
PGK1
SLC39A7
ATF6
RBPJ
MSX1
OTUD7B
CCN1
MFSD10
UPF3A
PRRX1
KDM6B
KATNB1
SMPDL3A
SQSTM1
LZTS1
TRIB1
PDZRN3
FRA10AC1
PPP6R3
ABHD2
ABCC10
RARG
NINJ2
ZNF687
BCL3
POP5
RFX1
CLCN3
MYLK4
NR2F1
MTMR4
GATA4
GPCPD1
USP17L20
ZFHX4
NRL
ZNF367
PCGF2
NBPF1
KCNAB2
TOP2A
KDM2B
CCNL2
PSPN
ALKBH7
CNOT2
ANKHD1-EIF4EBP3
ANKHD1
MRPS31
SMG6
NUBP1
ADAP1
USP17L22
DYNLT1
ITGAV
FOXP2
FURIN
NFKBIA
ARSG
MIDEAS
TLE2
IQSEC3
NR2F6
RNF103-CHMP3
RMND5A
DCAF11
CNTN1
RASSF5
PXYLP1
SP1
PKDCC
PCNA
ZFAND2A
OSBP
NLK
PPCDC
ABHD8
STIP1
EIF2AK3
KAZALD1
RNF207
DLG2
CSF3R
RHBDD1
HMGCS1
SOD2
AHDC1
LRATD2
MDM2
ATP5F1B
GADD45G
SLC45A4
PSMD6
RAB11B
KNL1
RBBP7
AGO1
G3BP1
LPCAT3
KMT5A
NCOA2
EVI5L
CITED2
KDM8
DSCAML1
RTN4
TRAF7
MACROH2A1
FTL
JUP
DDA1
MALRD1
GPC6
SREBF1
FAM107B
SMIM20
MEIS2
SLC7A5
CRLS1
GRSF1
SOCS3
B4GAT1
TRIM46
EVA1A
MYRIP
SHF
MIDN
METTL11B
RGS12
RBFOX2
PLEKHG2
SPG7
ARHGAP24
SEPTIN9
CCL26
GLRX5
ANTKMT
SSBP4
FST
DAGLB
SLC6A12
LCK
FAM167B
GADD45A
SEC22B
RGS3
ARAP1
INAVA
ZFP36
BFSP1
NCDN
KIAA0319L
PRMT5
NEK3
EIF3D
ATP6V1E2
SLC30A4
STAP2
ACYP1
MYEOV
HPCAL1
SH3YL1
ACP1
H3C12
H2BC17
H2AC17
ABCA4
DIABLO
FGR
ADM
MRPS28
PLEC
CYP51A1
RAB37
COX5A
STX1A
SERPINB1
SERPINE1
SNCG
MMRN2
HOXC6
LRCH4
FBXO24
RHOQ
CACNA1D
TCF7L2
ANKMY1
CEP41
FRMD3
ARHGAP4
ARID5A
CAPNS2
UGP2
CNKSR3
KMT2A
NKD1
CPT1A
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
ROGDI
DNAJB3
LTBR
BRMS1
MRPS24
SYNJ2
LAPTM5
ARHGEF10L
HOXC5
TES
PHETA1
RNF166
KCTD7
EFEMP2
RAC1
CDS2
INSM2
HOXB1
CSRNP1
MBD2