ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX6039039 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◣ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

RABL2B
ZNF335
RABL2A
DYNC1LI2
PSMD1
PSMG2
CEP76
CACTIN
NME6
IPO13
MAPKAPK5
POLR3F
DZANK1
TAOK3
SUDS3
FAM187A
EFTUD2
CCDC103
NVL
NEUROG3
DPH6
VTI1B
NUP85
VDAC2
DCTN1
RPL21
C19orf48
HSPA9
TBCK
AIMP1
NUP205
NCLN
STAM
GOSR2
MRPS7
GGA3
TSNAX
RWDD1
SKP1
POLR2E
CDX2
HADHB
HADHA
STAM2
TTC8
ATP5MG
PNO1
SLC35B1
SEC61B
ALG2
ZNF576
IRGQ
MRPS5
RPS23
ATP6AP1L
SRD5A1
PAK1IP1
C6orf52
ZNF503
CDCA7L
SMC2
BLCAP
UPF2
TSN
FARSB
BABAM2
RBKS
VARS1
PDAP1
BUD31
CAPRIN1
DLX4
NEUROD1
SUPV3L1
EIF4ENIF1
REXO1
PES1
ACTR10
COX7A2L
EXOSC5
BCKDHA
ZRANB2
LYRM4
FARS2
TMED1
SELENOF
HS2ST1
GOLGA5
FGFRL1
IQCG
RPL35A
FAM104A
C17orf80
TM9SF1
FZD8
USP1
PI4KB
PSMD12
RBBP5
ICE1
MRS2
ADK
AP3M1
WDR6
NDUFA4
FRG2C
PTGES2
RPS27A
CLHC1
INSM1
PAF1
DLL4
COMMD1
CCT4
VEZT
FGD6
NEUROG1
SART3
ISCU
PDE6B
RPS12
UFM1
RABGGTB
XPNPEP3
ST13
DNAJB7
ANAPC7
OSGEP
APEX1
PCBP1
ATOH1
APOM
BAG6
PROSER1
NHLRC3
RAB11B
DUSP6
DNAJB8
NFKBIL1
DDX39B
ATP6V1G2
SF3B3
COG4
ST18
DAPL1
MYRIP
RBL2
SHB
POP5
HESX1
FOXC1
GALNT10
HES1
FRAT2
PIN4
STK36
RNF25
EIF2S3
RPS29
LRR1
ID3
TAF9
RAD17
AK6
FRG2
LPIN1
LEFTY2
ANKRD1
DUX4
DENND1A
SEC11C
PNPLA1
PMAIP1
GBX1
ARHGAP11A-SCG5
ARHGAP11A
LIG3
GADD45GIP1
EHF
CALM2
KLF17
SUCLG1
OR6B2
NDUFA10
BNIP3
TPRA1
NXPH4
ZNF664-RFLNA
ZNF664
CCDC92
CERKL
GADD45G
SKIL
UBE2I
RPL7
RDH10
TLE2
PAX8
RBPJ
PCBD2
ZNF383
NCOR2
GATA4
MSX2
MRTO4
EMC1
PDHX
APIP
TMEM70
ELOC
MBNL2
PHLDB2
ACOT2
AMOT
GORAB
NEUROG2
MAL
HSPA1B
TIGD1
EIF4E2
GTF3C4
DDX31
DTNB
COCH
NKIRAS1
NR1D2
RAB17
UPF3A
KDM6B
MLH1
EPM2AIP1
TVP23C
ALKBH5
BMP7
HCRTR1
GJA10
TMPPE
GLB1
ARHGEF38
HES3
SLC22A24
CNPY2
GSR
CDC73
RAD54L2
SYBU
RPN1
MYSM1
ZGPAT
ARFRP1
ZNF649
OAZ3
MRPL9
LYPD6B
AXDND1
DMBX1
PRUNE2
APLN
CCDC200
USP44
MBD2
ZNF592
BANP
HOXB1
C15orf61
HEY2
CHN2
CPVL
CCDC85A
TRIP10
GPR108
PKIB
LDLRAD4
SPCS1
GLT8D1
PLA1A
BICRA
ANKLE2
DSCAML1
SRSF11
LRRC40
SCAMP4
ADAT3
RAN
DUSP4
MACROH2A1
USP17L20
USP17L21
USP17L12
USP17L11
USP17L18
CABIN1
RPP25
STK38
USP17L22
FZD10
MEOX1
ZNF397
PTCH1
CLEC10A
TFAP2A
HNRNPA2B1
CBX3
GATA3
CNTN4
OPRL1
LKAAEAR1
INKA2
KIF21B
ELF3
RSPO4
NOG
ATP6V0A4
KCNK2
BAMBI
MRPL38
SNX1
CIAO2A
TBC1D8
LYPD1
PCDHAC1
FOXP2
SEC22B
ZCWPW1
MEPCE
DDX3X
PDE12
BCOR
MTRNR2L1
RPH3A
CLDN15
SLC40A1
ZNF850
RGSL1
CFAP126
HAND1
HNRNPD
JAKMIP1
OLIG3
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
METTL11B
RYBP
HIC2
NFE2
DIRAS1
ARHGAP28
LRMDA
HOXA3
NCOA2
GRHL2
RBBP8NL
PLEKHA5
ANXA9
SOX14
HOXA1
LIN28A
NTAN1
SLC12A3
NDUFV2
TYRO3
STRADA
C6orf163
USP17L15
MAST2
SLC16A12
TCHP
PAH
ASCL1
IGF2
TAS2R8
TAS2R7
RARA
DLX6
ZFAND3
BTBD3
CYP26A1
ZNF746
TMEM275
SGK1
CDS1
MID1
RUNX1T1
NFIC
RNF32
CD101
TVP23B
CHPT1
FANK1
C16orf91
PDCD2
VENTX
H3-3A
ACOT1
DCLRE1C
METTL24
TBL1XR1
CEMP1
YAP1
OSCAR
NDUFA3
ZNF90
FOXF1
PXMP2
POLE
BTF3
KAZALD1
KLF6
NAGLU
LCOR
ZNF436
RIMS2
RBBP7
TRAP1
ZNF853
CXXC4
ZNF891
ZNF10
GALNT8
ZMIZ2
PCLO
ZFP37
FDFT1
KAT6B
CCDC33
ARL14EP
LIPK
PRDM10
PRDM12
TEX46
KDM1A
TENT4B
RPS10-NUDT3
RPS10
EIF4H
LEF1
SLC25A6
HOXB9
CHD8
MTCH2
EN1
OTX1
CD99L2
CCDC169-SOHLH2
CCDC169
TMEM185A
RIMS1
NAV2
PTPRE
ZNF81
CENPBD1
SPIN1
PRSS8
APBB1IP
OTP
KCNJ4
FAM53B
PTPRG
SP7
CLDN9
CCDC88C
CCNDBP1
BAZ1A
HINT1
STRA6
LIX1
CBX4
COL11A2
STON1-GTF2A1L
FAM89A
WNT3
PODXL
FAM24B
FAM120B
DLL1
TNFRSF19
PAX7
COMT
TXNRD2
FTL
AGO1
TRIM45
GOLM1
MACROD2
SUCLG2
ORMDL3
GNG4
CNOT2
ZBTB25
ZBTB1
ERI1
ALDH3A2
USP17L19
PLAGL1
RPS24
POLR3A
GYG2
DUSP12
CDX1
BCAT2
RASL10B
UPK2
NELFA
PRSS47
SHBG
FXR2
YTHDF2
GC
SEMA3C
EVC2
EVC
PKNOX1
ZNF296
GEMIN7
KIF26A
BTG1
DHRS3
SMARCA4
ZNF552
SH2B1
CITED2
SERTAD2
NFAM1
SYDE2
FREM1
ZFP64
ZNF292
ANKRD28
PARP16
CASC3
HOXB3
PRODH
LOC102724788
RARB
MTRNR2L2
MSH3
DHFR
MTRNR2L8
HOXA4
IGFBP6
SOAT2
SPATC1L
ARID3B
IER3
FLOT1
ID2
SP2
TMEM107
ARHGAP10
NDUFS7
ZP4
DPP9
SPATA25
ERCC1
TLE3
BBS9
IGFBP2
LBX1
TPM1
NEURL2
CTSA
TLE4
H2AW
PHOX2B
TTI2
WDR74
HOXA2
TBX3
ASB2
PCGF1
LBX2
TEPSIN
NDUFAF8
ERRFI1
DNM2
FGF19
FOXP1
COL23A1
P4HB
TBX2
FBXO31
NPAS4
MLEC
MINDY2
HPD
CS
SP5
PDE4D
PDHB
SYNPO
HUS1
SMAD3
MRPL34
CLGN
ARHGEF28
CAMTA1
RAB5B
KANSL3
FER1L5
TMEM120B
STX18
DCTN3
TLE1
XKR7
ZFHX3
RXRB
PHC2
DONSON
DOLPP1
ARID3C
ARRDC4
ANK2
HOXC4
PGK1
SLC39A7
CBFA2T2
ATF6
MSX1
OTUD7B
SIRT4
CCN1
MFSD10
PRRX1
KATNB1
PANK2
SMPDL3A
SQSTM1
LZTS1
TMEM101
TRIB1
CCDC174
BAIAP2
PDZRN3
FRA10AC1
PPP6R3
ABHD2
ABCC10
RARG
NINJ2
ZNF687
SMARCD2
BCL3
RFX1
CLCN3
MYLK4
NR2F1
MTMR4
QPRT
GPCPD1
ID1
ZFHX4
NRL
ZNF367
PCGF2
NBPF1
KCNAB2
TOP2A
KDM2B
CCNL2
PSPN
ALKBH7
ANKHD1-EIF4EBP3
ANKHD1
MRPS31
SMG6
NUBP1
SACM1L
ADAP1
DYNLT1
ITGAV
FURIN
NFKBIA
ARSG
MIDEAS
IQSEC3
POLDIP3
NR2F6
RNF103-CHMP3
RMND5A
DCAF11
HEXIM2
CNTN1
RASSF5
PXYLP1
SP1
PKDCC
PCNA
ZFAND2A
ZNF608
OSBP
NLK
PPCDC
ABHD8
STIP1
EIF2AK3
RNF207
DLG2
CSF3R
RHBDD1
HMGCS1
SOD2
AHDC1
LRATD2
MDM2
ATP5F1B
SLC45A4
PSMD6
KNL1
G3BP1
LPCAT3
KMT5A
EVI5L
KDM8
RTN4
TRAF7
JUP
DDA1
MALRD1
GPC6
SREBF1
POLG
FAM107B
SMIM20
MEIS2
SLC7A5
DLC1
CRLS1
GRSF1
SOCS3
B4GAT1
TRIM46
EVA1A
MTF2
SHF
MBD6
DDIT3
MIDN
RGS12
RBFOX2
PLEKHG2
SPG7
ARHGAP24
TPCN1
SEPTIN9
CCL26
GLRX5
ANTKMT
PKN2
SSBP4
FST
DAGLB
SLC6A12
LCK
FAM167B
GADD45A
CBX5
TMEM94
BAHCC1
CCDC43
RGS3
ARAP1
KDM3A
INAVA
ZFP36
BFSP1
NCDN
KIAA0319L
PRMT5
NEK3
EIF3D
ATP6V1E2
TLN1
SLC30A4
CREB3
STAP2
ACYP1
MYEOV
HPCAL1
SH3YL1
ACP1
H3C12
H2BC17
H2AC17
ABCA4
DIABLO
FGR
ADM
ZBTB18
MRPS28
PLEC
CYP51A1
RAB37
COX5A
STX1A
SERPINB1
SERPINE1
SNCG
MMRN2
HOXC6
LRCH4
FBXO24
RHOQ
CACNA1D
GMEB2
TCF7L2
ARID2
HMGB1
ANKMY1
CEP41
CIC
FRMD3
ARHGAP4
HNMT
ARID5A
CAPNS2
UGP2
CNKSR3
KMT2A
NKD1
CPT1A
ROGDI
DNAJB3
LTBR
KIAA0319
BRMS1
MRPS24
TRDMT1
SYNJ2
LAPTM5
ARHGEF10L
HOXC5
TES
PHETA1
RNF166
KCTD7
EFEMP2
LNPEP
RAC1
CDS2
INSM2
CSRNP1
CMSS1
USP42
INAFM2
ARID4A
DUSP9
ILF2
LFNG
PNKD
LIMA1
ARL8A
IFI16
TXNDC11
ZNF414
TDRKH
TUBB4B
TXNRD1
HTR5A
AIFM2
EVPL
SEC14L1
SYTL3
HIBADH
CERK
IKBKB
WTAP
LMNA
ZNF76
LUC7L2
LRP5L
GTF3A
PRKACA
UBE2F
LAMP1
SORBS2
NRSN2
NR2C1
KLHDC2
MT2A
IL6R
NRM
HOXB4
SLC35A3
BHLHE40
RAI14
COMTD1
CXCR4
TCTEX1D4
BTBD19
IQGAP2
CFL1
C12orf73
CPSF4L
TUBGCP3
CDK6
VOPP1
RBM15
SH2D6
UACA
ZNF77
CCDC88A
RNF34
USPL1
CCDC88B
RNF149
NRCAM
NEDD9
GSTP1
CR1L
RNPEPL1
NRXN1
TRABD2B
LRIG1
EPM2A
SH3BP2
IRF9
PIKFYVE
PIGV
ZNF3
H6PD
ING1
GOT1
TBL1X
PAX6
TMEM60
PHTF2
RASSF2
ZDHHC4
MYADM
EIF1B
CCL16
KRI1
CDKN2D
E4F1
ANKS4B
NANP
USP3
KCNH7
CYB5R4
TF
METRN
DCAF7
TRAF4
WDR97
MAF1
SCAP
NCOA7
ZNF595
CRKL
SEMA5B
OPRM1
POLR3E
GFOD1
PKM
TUBB
INHBE
NKX1-1
GPAA1
EXOSC4
ZNF827
MARCHF3
CXXC5
STX16
ATP2B2
RNF144A
CLK1
PC
ICAM1
ATG16L1
ERI3
SMIM11B
SMIM11A
CEBPE
TRIM7
CDC42EP3
RXRA
TSPAN4
POLR2L
NFE2L1
NCBP2AS2
NCBP2
ENO1
SRSF2
SLC25A19
MFSD11
KPNA4
UGT1A1
FAAP24
CEP89
IRS1
GSN
PCTP
PARK7
HECTD4