ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584305 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◣ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

NEUROG2
ZNF335
ZP4
RABL2B
MAPKAPK5
PSMD1
IPO13
RABL2A
NME6
VEZT
FGD6
HES1
NEUROG3
RWDD1
HES3
CACTIN
VDAC2
TAOK3
SUDS3
NUP85
ZNF503
POLR3F
DZANK1
HSPA9
IGFBP2
RPL21
ATP5MG
DYNC1LI2
NVL
VTI1B
TBCK
AIMP1
FAM187A
EFTUD2
CCDC103
ARHGAP10
PAK1IP1
C6orf52
DCTN1
BLCAP
NUP205
POLR2E
ACTR10
SRD5A1
REXO1
SKP1
CDX2
DPH6
PMAIP1
C19orf48
NCLN
STAM2
PSMG2
CEP76
EXOSC5
BCKDHA
UPF2
STAM
MRPS7
GGA3
FRG2C
SLC35B1
PES1
PNO1
HADHB
HADHA
TSN
GOSR2
SUPV3L1
INSM1
RBBP5
LYRM4
FARS2
FARSB
SEC61B
ALG2
ANAPC7
CAPRIN1
ZNF576
IRGQ
SKIL
IQCG
RPL35A
BABAM2
RBKS
ZDHHC1
LZTS1
PCBP1
PSMD12
TSNAX
TMED1
MRPS5
ATOH1
SART3
ISCU
GOLGA5
VARS1
NDUFA4
SF3B3
COG4
ICE1
COX7A2L
TTC8
EIF4ENIF1
PDAP1
BUD31
PAF1
RPS12
RPS23
ATP6AP1L
SMC2
BNIP3
PI4KB
OSGEP
APEX1
RBBP7
GADD45G
MALRD1
PANK4
HES5
USP1
ZRANB2
HOXA4
TM9SF1
NEUROG1
LEFTY2
TTYH1
KDM8
FAM104A
C17orf80
TESC
RPS27A
CLHC1
DUX4
SELENOF
HS2ST1
NFKBIL1
DDX39B
ATP6V1G2
CCDC33
UFM1
XPNPEP3
ST13
PRRX1
UBE2I
PAX6
ADK
AP3M1
FZD8
RPS29
LRR1
ST18
PTGES2
CPSF4L
RABGGTB
DLL4
PHOX2B
PROSER1
NHLRC3
PDHB
CR1L
HOXB1
NEUROD1
HOXB3
HOXB4
FRG2
BICRA
HHIP
APOM
BAG6
PNKD
RASL10B
HNRNPA2B1
CBX3
PIN4
TRABD2B
SULF1
NOXO1
GFER
TAF9
RAD17
AK6
GTF3A
CNTN1
NUTM2D
NEDD9
ERRFI1
RYBP
STRA6
PDPN
SLC10A2
PDE6B
MRTO4
EMC1
DDX3X
SEC11C
MYRIP
SOX12
RGS12
HOXD3
EPHA5
TMEM120B
DLX4
STK36
RNF25
CSRNP1
ARHGAP11A-SCG5
ARHGAP11A
NEK3
KAZALD1
OR6B2
NDUFA10
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
PRUNE2
BFSP1
LIMCH1
METTL11B
COMMD1
CCT4
GADD45GIP1
KDM2B
LRATD2
ZFX
CNTN4
HES7
RPN1
PDHX
APIP
TPRA1
FJX1
TTLL6
TLE4
LPIN1
HNF1A
OTX1
GFRA3
CACNA1D
RPH3A
EIF2S3
SYBU
TIGD1
EIF4E2
ABCB5
SPACA1
TMEM107
KIF26A
RAI14
PCBD2
ZGPAT
ARFRP1
OAZ3
MRPL9
BRWD1
WDR59
CNPY2
UPF3A
LRIG1
CLGN
SOX11
RPL7
RDH10
SUCLG1
ANKLE2
PDGFA
TCF7L2
LBX1
SOCS3
REV3L
CLDN2
HOXA3
CDC73
DMBX1
RARA
AXDND1
HNRNPD
DCTN3
ARID3C
REC8
WBP1L
TBC1D8
ZMAT4
SALL1
TNC
GTF3C4
DDX31
CCN1
DHRS3
ZNF383
BAHCC1
CAMTA1
PDE12
CCDC200
HOXB8
HOXB7
DSCAML1
ECM1
HOXA2
DBX1
CATSPERG
LIN28B
CDX1
GORAB
BAIAP2
FGFR4
MSX2
MAST2
XIAP
VOPP1
C15orf61
CPN2
RADIL
ANK2
PPM1B
SLC39A6
PRDM12
TSHZ1
ZADH2
KIF21B
GPR176
RBPJ
STOML2
ADAMTS15
CD99L2
TMEM131L
USP17L20
USP17L22
LIG3
TMPPE
GLB1
ALDH1A2
CDC42EP2
BAZ2B
CYP26A1
PACSIN2
ZSWIM6
PIPOX
QPRT
ZNF746
ID2
TPM1
GAD2
KDM6B
ABLIM3
KLF17
MYLK4
CPLX1
EBF3
OR8J1
DHX32
HMGN1
TBX3
METTL24
SOX21
HOXA5
LRRC15
FAM107A
DST
RPS10-NUDT3
RPS10
RPS24
POLR3A
SCARF1
SLC22A2
FABP5
LZTFL1
ONECUT2
FGF19
CEMP1
ERCC1
PKNOX2
ALKBH6
SYNE4
EIF4H
CHN2
CPVL
LINGO1
TLE2
SLC7A5
ALKBH5
MSX1
SOX6
MTCH2
RNF138
FBLN1
JAKMIP1
LHX2
ZFHX4
ADGRL2
SMC6
GEN1
ZCWPW1
MEPCE
TRAP1
NEBL
TBL1XR1
YAP1
EIF2S1
ATP6V1D
SPCS1
GLT8D1
ANTKMT
METRN
SALL4
ZNF775
KLF6
RUNX1T1
GREB1
ID3
TLE1
PHC2
SPOCK2
KMT2A
HOXA6
PAX3
ITPRIP
CYP51A1
H3-3A
KMT2B
NUP210
C12orf73
DAAM1
TPST2
STMN1
MEX3B
NR6A1
KRT20
RPRM
BBS9
TLE3
HEY1
CNKSR3
HOXC4
ITIH4
MUSTN1
KLHL15
PIGR
MEIS3
DAPL1
STK38
HSPB8
CASC3
SRGAP3
SEMA6D
EIF4E3
SNCG
MMRN2
KEAP1
HOXD1
TUBB3
TFDP2
PAX4
ACOT2
CA4
ADM
CS
HOXC5
CUEDC1
LRRC10B
MEF2C
SERPING1
TPCN1
FGF2
TMEM70
ELOC
FBXO10
MEIS2
ALOX5AP
TMEM14A
PCDH11Y
TCF20
IL37
SRSF11
LRRC40
PARP16
TANC1
ENO1
USP17L21
USP17L12
USP17L11
USP17L18
HOXB9
CER1
RARB
LIN28A
NKIRAS1
NR1D2
ASXL3
LAPTM4A
TAGLN3
IFI16
TCF4
CEP97
PLAGL1
MEOX1
ZFHX3
TYRO3
HOXA9
HOXA7
MARCHF7
SP5
PCBP4
C1orf141
BNIP2
USH1C
ME2
PANK2
ELMO1
PCDH18
RGS16
LDLRAD3
CSTF2T
SEMA4B
IP6K3
ERI1
HRK
PLEKHA6
LYPD6B
SCN2A
FOXD1
N4BP3
BTF3
M1AP
ABAT
NUTM2F
DUSP6
NELFA
GPR157
SLC25A33
PJA2
MTRNR2L1
MTRNR2L2
MSH3
DHFR
MTRNR2L8
IGFBP6
SOAT2
SPATC1L
ARID3B
NFE2
IER3
FLOT1
SP2
C16orf91
NDUFS7
SH2B1
KAT6B
DPP9
SPATA25
TRIP10
GPR108
NEURL2
CTSA
DNAJB7
MRPL38
H2AW
TTI2
WDR74
HOXA1
ASB2
PCGF1
LBX2
CDCA7L
TEPSIN
NDUFAF8
DNM2
FOXP1
COL23A1
P4HB
TBX2
FBXO31
NPAS4
MLEC
MINDY2
HPD
TNFRSF19
ANKRD28
PDE4D
SYNPO
HUS1
SMAD3
CCNDBP1
MRPL34
ARHGEF28
RAB5B
KANSL3
FER1L5
STX18
XKR7
RXRB
DONSON
DOLPP1
ARRDC4
PGK1
SLC39A7
HSPA1B
CBFA2T2
ATF6
OTUD7B
SIRT4
MFSD10
KATNB1
SMPDL3A
SQSTM1
TMEM101
TRIB1
CCDC174
PDZRN3
FRA10AC1
PPP6R3
ABHD2
ABCC10
RARG
NINJ2
ZNF687
SMARCD2
BCL3
POP5
RFX1
CLCN3
NR2F1
MTMR4
GATA4
GPCPD1
ID1
NRL
ZNF367
PCGF2
NBPF1
KCNAB2
TOP2A
CCNL2
PSPN
ALKBH7
CNOT2
ANKHD1-EIF4EBP3
ANKHD1
MRPS31
SMG6
NUBP1
SACM1L
ADAP1
DYNLT1
ITGAV
FOXP2
FURIN
NFKBIA
ARSG
MIDEAS
IQSEC3
POLDIP3
NR2F6
RNF103-CHMP3
RMND5A
DCAF11
HEXIM2
RASSF5
PXYLP1
SP1
PKDCC
PCNA
ZFAND2A
ZNF608
OSBP
NLK
PPCDC
ABHD8
STIP1
EIF2AK3
RNF207
DLG2
CSF3R
RHBDD1
HMGCS1
SOD2
AHDC1
MDM2
ATP5F1B
SLC45A4
PSMD6
RAB11B
KNL1
AGO1
G3BP1
LPCAT3
KMT5A
NCOA2
EVI5L
CITED2
RTN4
TRAF7
MACROH2A1
FTL
JUP
PRDM10
DDA1
GPC6
SREBF1
POLG
FAM107B
SMIM20
DLC1
CRLS1
GRSF1
B4GAT1
TRIM46
EVA1A
MTF2
SHF
MBD6
DDIT3
MIDN
RBFOX2
PLEKHG2
SPG7
ARHGAP24
SEPTIN9
CCL26
GLRX5
PKN2
SSBP4
FST
DAGLB
SLC6A12
LCK
FAM167B
GADD45A
CBX5
TMEM94
SEC22B
CCDC43
RGS3
ARAP1
KDM3A
INAVA
ZFP36
NCDN
KIAA0319L
PRMT5
EIF3D
ATP6V1E2
TLN1
SLC30A4
CREB3
STAP2
ACYP1
MYEOV
HPCAL1
SH3YL1
ACP1
H3C12
H2BC17
H2AC17
ABCA4
DIABLO
FGR
ZBTB18
MRPS28
PLEC
RAB37
COX5A
STX1A
SERPINB1
SERPINE1
HOXC6
LRCH4
FBXO24
RHOQ
GMEB2
ARID2
HMGB1
ANKMY1
CEP41
CIC
FRMD3
ARHGAP4
HNMT
ARID5A
CAPNS2
UGP2
NKD1
CPT1A
ROGDI
DNAJB3
LTBR
KIAA0319
BRMS1
MRPS24
TRDMT1
SYNJ2
LAPTM5
ARHGEF10L
TES
PHETA1
RNF166
KCTD7
EFEMP2
LNPEP
RAC1
CDS2
INSM2
MBD2
CMSS1
USP42
INAFM2
ARID4A
ANKRD1
DUSP9
ILF2
LFNG
LIMA1
ARL8A
TXNDC11
ZNF414
TDRKH
TUBB4B
TXNRD1
HTR5A
AIFM2
EVPL
SEC14L1
SYTL3
HIBADH
CERK
IKBKB
WTAP
LMNA
ZNF76
LUC7L2
LRP5L
PRKACA
UBE2F
LAMP1
SORBS2
NRSN2
NR2C1
KLHDC2
MT2A
IL6R
NRM
SLC35A3
BHLHE40
COMTD1
CXCR4
TCTEX1D4
BTBD19
IQGAP2
CFL1
TUBGCP3
CDK6
RBM15
SH2D6
UACA
ZNF77
CCDC88A
RNF34
USPL1
CCDC88B
RNF149
NRCAM
GSTP1
RNPEPL1
NRXN1
EPM2A
SH3BP2
IRF9
PIKFYVE
PIGV
ZNF3
H6PD
ING1
GOT1
TBL1X
TMEM60
PHTF2
RASSF2
ZDHHC4
MYADM
EIF1B
CCL16
KRI1
CDKN2D
E4F1
ANKS4B
CBX4
NANP
USP3
KCNH7
CYB5R4
TF
DCAF7
CHD8
TRAF4
WDR97
MAF1
SCAP
NCOA7
ZNF595
ORMDL3
CRKL
SEMA5B
OPRM1
POLR3E
GFOD1
PKM
TUBB
INHBE
NKX1-1
GPAA1
EXOSC4
YTHDF2
ZNF827
MARCHF3
CXXC5
STX16
ATP2B2
RNF144A
CLK1
PC
ICAM1
ATG16L1
ERI3
SMIM11B
SMIM11A
CEBPE
TRIM7
CDC42EP3
RXRA
TSPAN4
POLR2L
NFE2L1
NCBP2AS2
NCBP2
SRSF2
SLC25A19
MFSD11
KPNA4
UGT1A1
FAAP24
CEP89
IRS1
GSN
PCTP
PARK7
HECTD4
UNC13D
ATP5MC1
TRAF2
PLEKHF2
TACC1
TCHP
L1CAM
ANP32E
CELSR3
MPND
ACVR1
PXMP4
MPC1
TTC30B
GPT2
GGT1
NEO1
CCDC114
SH3BP4
HSP90B1
C14orf93
ZC2HC1C
ETV4
PAQR8
DUSP12
UBE2C
SRCAP
LOC730183
GPATCH8
DGKZ
RHBG
DDX1
ETFBKMT
CALM2
GBA
RTBDN
LMO4
FAM24A
HNRNPC
TMC6
TANK
GPR35
RAB17
LASP1
FLAD1
TMTC4
SLC25A6
ALDH4A1
ATP23