ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584309 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◣ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
RABL2B
RABL2A
PSMD1
NME6
MAPKAPK5
NUP85
LBX1
CACTIN
RWDD1
VDAC2
IPO13
TAOK3
SUDS3
HSPA9
NVL
BLCAP
NEUROG2
POLR3F
DZANK1
PSMG2
CEP76
DYNC1LI2
FAM187A
EFTUD2
CCDC103
NUP205
HADHB
HADHA
STAM
VTI1B
RPL21
LYRM4
FARS2
POLR2E
GOSR2
C19orf48
ATP5MG
FARSB
CAPRIN1
ACTR10
NCLN
ZNF503
FZD8
PES1
EXOSC5
BCKDHA
TBCK
AIMP1
SRD5A1
SEC61B
ALG2
TSNAX
ZNF576
IRGQ
REXO1
MRPS7
GGA3
UPF2
TSN
SKP1
STAM2
TTC8
DCTN1
SLC35B1
RBBP5
PAK1IP1
C6orf52
IQCG
RPL35A
DPH6
SUPV3L1
PCBP1
PI4KB
COX7A2L
PNO1
GOLGA5
FRG2C
VARS1
SART3
ISCU
ZRANB2
PDAP1
BUD31
UFM1
EIF4ENIF1
RABGGTB
ANAPC7
ICE1
PROSER1
NHLRC3
PSMD12
ANK2
XPNPEP3
ST13
HES3
RPS12
MYLK4
SELENOF
HS2ST1
NDUFA4
RPS23
ATP6AP1L
SMC2
SMPDL3A
C16orf91
FGF19
USP1
TMED1
OSGEP
APEX1
BABAM2
RBKS
HOXA4
ADK
AP3M1
TLE4
HES1
EVA1A
DBX1
APOM
BAG6
RPS27A
CLHC1
IGFBP2
DCTN3
ARID3C
MRPS5
VEZT
FGD6
SF3B3
COG4
PIN4
TRABD2B
PAF1
CDX2
BFSP1
RGS12
FAM104A
C17orf80
NEUROG3
TMEM120B
ARHGAP11A-SCG5
ARHGAP11A
ABCG2
LRATD2
BNIP3
PRDM12
UBE2I
PRRX1
ARHGAP10
NFKBIL1
DDX39B
ATP6V1G2
DUX4
TAF9
RAD17
AK6
COMMD1
CCT4
FOXP2
MEIS2
SYBU
OR6B2
NDUFA10
BICRA
SOX21
ARHGAP24
TPM1
SYNPO
RUNX1T1
MXI1
ATOH1
MRTO4
EMC1
DMRT3
RPS29
LRR1
FOXD3
TMEM14A
CCN1
MALRD1
FRG2
DSCAML1
SKIL
EIF2S3
RPL7
RDH10
PRUNE2
LRAT
CACNA1D
ERRFI1
TM9SF1
SUCLG1
PCDH11Y
PTGES2
PAX8
INSM1
HOXB3
HOXB4
SEC11C
KDM8
FGFR2
CEP41
TPST2
ID1
LMO4
PRDM13
PDHB
SEC22B
TLE1
HOXA3
TPRA1
HOXD3
OR8J1
NUTM2D
RAI14
ATOH8
SLC7A5
SPACA1
METTL24
MSX1
RBBP7
GTF3C4
DDX31
CCDC33
PDE1B
LRIG1
PDZRN3
BAIAP2
PDHX
APIP
GPR176
LRGUK
CLEC18C
ANKLE2
PMAIP1
TLE3
DTX4
TMEM107
C12orf73
GADD45GIP1
KDM2B
NEUROD1
NR2F1
WT1
HNF1A
OAZ3
MRPL9
CYP26A1
KIF26A
METTL11B
DLX4
TPO
ZFHX4
NRARP
LRIG3
MYO10
RGL1
DAPL1
SPTBN1
SALL1
FHL1
SLA
UBE2QL1
PKDCC
TRIM71
SULF1
CDH16
TLE2
HOXB1
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
ARHGEF28
B3GALT5
SEMA6D
TRAF3IP2
TBX3
TMEM70
ELOC
CAMTA1
ELMOD2
CCDC200
ZNF608
NEUROG1
STK36
RNF25
LRRC10B
CDC73
KIF21B
ZFX
PANK4
HES5
CD69
LPIN1
CHMP4C
PIM1
LZTS1
DMBX1
NEK3
NEBL
SLAMF8
DAAM1
RPN1
DDX3X
ZP4
PHC2
RHOB
MAB21L2
PCBD2
NRXN1
CCDC198
POP5
GFRA3
ZFHX3
CNTN1
HOXC4
ZGPAT
ARFRP1
LHX2
PLAGL1
C10orf90
TESC
YAP1
CR1L
CATSPERG
CLDN2
WRAP53
TP53
USP17L20
USP17L22
NXPH4
HOXA2
CNPY2
SOCS3
PDE6B
CLGN
MEF2C
GORAB
FOXP1
FABP5
OCLN
KMT2A
PLPPR1
CNN3
ZNF367
TP53INP1
SOX6
MEOX1
VCAN
MEIS3
HHIP
HNRNPA2B1
CBX3
ITIH4
MUSTN1
ZNF746
TBC1D8
SALL4
TEX2
FAM222A
RBP3
CETN1
PLEKHA5
SLC39A6
NRG2
REC8
CRABP2
ALKBH5
IGFN1
RARA
PAM
SCARF1
ABLIM3
GADD45G
DHRS9
NCOR2
SKA2
PRR11
LMO1
LIN28B
SKOR1
PLCH1
PDE12
ADM
GNG12
GUCY2C
ZNF383
ENO1
ERCC1
BBS9
DUSP6
NELFA
CLEC18A
DRD2
NCCRP1
REV3L
ECM1
CSN3
PDPN
ID2
KRT20
PJA2
NPAS1
PCDH18
FAM107A
NEUROD4
LIN28A
DHX32
ARHGEF1
GSG1
B3GALT2
FSTL1
DLL4
NCOA2
KCNK16
RASL10B
PKNOX2
RAN
PGF
CDC42EP2
GATA3
JAKMIP1
MTMR7
LIX1
LIMK2
POLR1D
LNX2
CFAP221
SPCS1
GLT8D1
TTR
CDRT15L2
RCOR1
WDR59
SYDE2
GSX2
USP17L21
USP17L12
USP17L11
USP17L18
GALNTL5
CDX1
ASXL3
SLC1A3
TNFRSF19
GAD2
FOXB1
LMO3
PRRC2C
AGMO
GCSAM
VAV3
VSTM2L
ARL4C
SOST
DUSP2
GTF3A
NEDD9
PAX3
FGFR4
CFAP69
MNX1
LRP2
DLG2
IRS2
DGKZ
ARMC12
PRSS47
CCN2
TSPAN13
PHOX2B
OR5A2
TBL1XR1
SH3BP5
MIDEAS
CPSF4L
TMCC3
ADGRL2
PRM2
TNP2
PRM3
TYRO3
NBPF9
MRPL38
PEX2
IPO11
ZCCHC13
GJA3
SLC10A2
WBP1L
TMEM132C
UGT1A4
TRMT9B
PNKD
FLVCR2
KRTAP12-1
PTPRZ1
CHD8
PPP1R12B
SFTPC
BMP1
CA14
KAT6B
CLEC18B
CS
ZBTB18
VANGL2
LOC102723360
BMPR1B
EFNB1
ASPH
BCO1
GPC4
SH2B1
GFRA1
HES4
TAGLN3
SNCG
MMRN2
VASN
TCF4
PAX7
ST18
MSX2
AGPAT4
GPC6
RPS24
POLR3A
NR2F6
PMFBP1
ABAT
EPB41L5
SLC18A1
BRWD1
RCOR3
PFKM
DICER1
KIAA1958
C9orf147
FAM181A
FLRT3
ME2
TRDMT1
PIMREG
MYRIP
CRB2
PCBP4
VOPP1
DMD
CER1
CENPS-CORT
CENPS
CMTR1
SLC22A2
TAS2R8
TAS2R7
RAPGEF4
NOTCH1
CNR1
CNOT2
MECOM
PREX2
SLC25A6
MTRNR2L1
RARB
MTRNR2L2
MSH3
DHFR
MTRNR2L8
IGFBP6
SOAT2
SPATC1L
ARID3B
NFE2
IER3
FLOT1
SP2
NDUFS7
DHRS3
DPP9
SPATA25
LEFTY2
TRIP10
GPR108
NEURL2
CTSA
DNAJB7
H2AW
TTI2
WDR74
HOXA1
ASB2
PCGF1
LBX2
CDCA7L
TEPSIN
NDUFAF8
DNM2
COL23A1
P4HB
TBX2
FBXO31
NPAS4
MLEC
MINDY2
HPD
ANKRD28
RPS10-NUDT3
RPS10
SP5
PDE4D
AXDND1
HUS1
SMAD3
CCNDBP1
MRPL34
RAB5B
ID3
KANSL3
FER1L5
STX18
XKR7
RXRB
DONSON
DOLPP1
ARRDC4
PGK1
SLC39A7
HSPA1B
CBFA2T2
ATF6
RBPJ
OTUD7B
SIRT4
MFSD10
UPF3A
KDM6B
KATNB1
PANK2
SQSTM1
TMEM101
TRIB1
CCDC174
FRA10AC1
PPP6R3
ABHD2
ABCC10
RARG
NINJ2
ZNF687
SMARCD2
BCL3
RFX1
CLCN3
MTMR4
QPRT
GATA4
GPCPD1
NRL
SRSF11
PCGF2
NBPF1
KCNAB2
TOP2A
CCNL2
PSPN
ALKBH7
ANKHD1-EIF4EBP3
ANKHD1
MRPS31
SMG6
LRRC40
NUBP1
SACM1L
ADAP1
DYNLT1
ITGAV
FURIN
NFKBIA
ARSG
IQSEC3
POLDIP3
RNF103-CHMP3
RMND5A
DCAF11
HEXIM2
RASSF5
PXYLP1
SP1
PCNA
ZFAND2A
OSBP
NLK
PPCDC
ABHD8
STIP1
EIF2AK3
KAZALD1
RNF207
CSF3R
RHBDD1
HMGCS1
SOD2
AHDC1
MDM2
ATP5F1B
SLC45A4
PSMD6
RAB11B
KNL1
AGO1
G3BP1
LPCAT3
KMT5A
EVI5L
CITED2
RTN4
TRAF7
MACROH2A1
FTL
JUP
PRDM10
DDA1
HNRNPD
SREBF1
POLG
FAM107B
SMIM20
DLC1
CRLS1
GRSF1
B4GAT1
TRIM46
LIG3
MTF2
SHF
MBD6
DDIT3
MIDN
RBFOX2
PLEKHG2
SPG7
TPCN1
SEPTIN9
CCL26
GLRX5
ANTKMT
PKN2
SSBP4
FST
DAGLB
SLC6A12
LCK
FAM167B
GADD45A
CBX5
TMEM94
BAHCC1
CCDC43
RGS3
ARAP1
KDM3A
INAVA
ZFP36
NCDN
KIAA0319L
PRMT5
EIF3D
ATP6V1E2
TLN1
SLC30A4
CREB3
STAP2
ACYP1
MYEOV
HPCAL1
SH3YL1
ACP1
H3C12
H2BC17
H2AC17
ABCA4
DIABLO
FGR
MRPS28
PLEC
CYP51A1
RAB37
COX5A
STX1A
SERPINB1
SERPINE1
HOXC6
LRCH4
FBXO24
RHOQ
GMEB2
TCF7L2
ARID2
HMGB1
ANKMY1
CIC
FRMD3
ARHGAP4
HNMT
ARID5A
CAPNS2
UGP2
CNKSR3
NKD1
CPT1A
ROGDI
DNAJB3
LTBR
KIAA0319
BRMS1
MRPS24
SYNJ2
LAPTM5
ARHGEF10L
HOXC5
TES
PHETA1
RNF166
KCTD7
EFEMP2
LNPEP
RAC1
CDS2
INSM2
EIF4H
CSRNP1
MBD2
CMSS1
USP42
INAFM2
ARID4A
ANKRD1
DUSP9
ILF2
LFNG
LIMA1
ARL8A
IFI16
TXNDC11
ZNF414
TDRKH
TUBB4B
TXNRD1
HTR5A
AIFM2
EVPL
SEC14L1
SYTL3
HIBADH
CERK
IKBKB
WTAP
LMNA
ZNF76
LUC7L2
LRP5L
PRKACA
UBE2F
LAMP1
SORBS2
NRSN2
NR2C1
KLHDC2
MT2A
IL6R
NRM
SLC35A3
BHLHE40
COMTD1
CXCR4
TCTEX1D4
BTBD19
IQGAP2
CFL1
TIGD1
EIF4E2
TUBGCP3
CDK6
RBM15
SH2D6
UACA
ZNF77
CCDC88A
RNF34
USPL1
CCDC88B
RNF149
NRCAM
GSTP1
RNPEPL1
EPM2A
SH3BP2
IRF9
PIKFYVE
PIGV
ZNF3
H6PD
ING1
GOT1
TBL1X
PAX6
TMEM60
PHTF2
RASSF2
ZDHHC4
MYADM
EIF1B
CCL16
KRI1
CDKN2D
E4F1
ANKS4B
CBX4
NANP
USP3
KCNH7
CYB5R4
TF
METRN
DCAF7
NKIRAS1
KLF6
TRAF4
WDR97
MAF1
SCAP
NCOA7
ZNF595
ORMDL3
CRKL
SEMA5B
OPRM1
POLR3E
GFOD1
PKM
TUBB
INHBE
NKX1-1
GPAA1
EXOSC4
YTHDF2
ZNF827
MARCHF3
CXXC5
STX16
ATP2B2
RNF144A
CASC3
CLK1
PC
ICAM1
ATG16L1
ERI3
SMIM11B
SMIM11A
CEBPE
TRIM7
CDC42EP3
RXRA
TSPAN4
POLR2L
NFE2L1
NCBP2AS2
NCBP2
SRSF2
SLC25A19
MFSD11
KPNA4
UGT1A1
FAAP24
CEP89
IRS1
GSN
PCTP
PARK7
HECTD4
UNC13D
ATP5MC1
TRAF2
PLEKHF2
TACC1
TCHP
L1CAM
ANP32E
CELSR3
MPND
ACVR1