ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX21236747 | IMR-32
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◣ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

RWDD1
FAM187A
EFTUD2
CCDC103
HADHB
HADHA
NUP85
TAOK3
SUDS3
GOSR2
RABL2B
SLC35B1
PSMD12
ZNF335
MRPS7
GGA3
NVL
RBBP5
RABL2A
CACTIN
NME6
PNO1
TSNAX
POLR3F
DZANK1
ZRANB2
REXO1
RPS12
MAPKAPK5
BLCAP
PAK1IP1
C6orf52
VTI1B
PI4KB
TSN
HSPA9
POLR2E
COX7A2L
C19orf48
VDAC2
NUP205
STAM
RABGGTB
NFKBIL1
DDX39B
ATP6V1G2
SART3
ISCU
PSMD1
RPS27A
CLHC1
DYNC1LI2
SEC61B
ALG2
EXOSC5
BCKDHA
XPNPEP3
ST13
RPL21
FAM104A
C17orf80
FARSB
SELENOF
HS2ST1
TMED1
PSMG2
CEP76
LYRM4
FARS2
USP1
SUPV3L1
STAM2
DCTN1
OAZ3
MRPL9
SMC2
ZNF576
IRGQ
APOM
BAG6
UFM1
NDUFA4
NCLN
ATP5MG
TBCK
AIMP1
PES1
RPS29
LRR1
UPF2
CAPRIN1
SUCLG1
COMMD1
CCT4
VARS1
RPS23
ATP6AP1L
ANAPC7
GOLGA5
IQCG
RPL35A
TTC8
PCBP1
MRPS5
PROSER1
NHLRC3
SRD5A1
PDAP1
BUD31
ADK
AP3M1
ICE1
IPO13
TMEM101
SKP1
EIF4ENIF1
CDC73
DPH6
GORAB
STK36
RNF25
C16orf91
RPN1
OSGEP
APEX1
SF3B3
COG4
PIN4
OR6B2
NDUFA10
ARHGAP11A-SCG5
ARHGAP11A
TM9SF1
PAF1
MTRNR2L8
MLEC
BABAM2
RBKS
CD24
TAF9
RAD17
AK6
CCDC43
PTGES2
ACTR10
MRPL38
GTF3C4
DDX31
AXDND1
GADD45GIP1
RPS10-NUDT3
RPS10
NRP1
EIF4H
DUSP12
HSPA1B
CNPY2
PCGF1
LBX2
BAHCC1
HSD17B1
SMLR1
MAMDC2
ZNF383
MYCN
EIF2S3
RPL7
RDH10
SRSF11
LRRC40
UBE2I
KLHDC8A
OPRM1
CXCR4
BICRA
MFAP4
NFATC4
WRAP53
TP53
MRTO4
EMC1
ALKBH5
RPS24
POLR3A
MAD2L1BP
APBA1
SEC11C
ADAMTS8
RHBDF2
NELFA
CCDC68
SPCS1
GLT8D1
SLC35A3
CDON
CS
DPYSL5
NRM
TCHP
PPP1R18
AFF3
ANO3
LRRC43
CRYBG3
RFX8
DDX1
PCNX1
ZCWPW1
MEPCE
ST6GALNAC3
SYBU
SLC22A23
ABCA4
GMEB2
FAM162A
CCDC58
SECTM1
RP1L1
KCNN3
HSPE1-MOB4
HSPE1
HSPD1
TPCN1
XXYLT1
QPRT
INKA2
KIAA0319
ZBTB18
CHD8
PLEKHA6
SNRPD2
QPCTL
NRXN1
SAMD10
PRPF6
LIMA1
TSPAN11
PDHX
APIP
MTRNR2L1
GGA1
TIAM2
TOB1
SPZ1
TBX2
CYTH3
PKN2
DLC1
ARSG
BCAT2
FRMD6
GPR88
LEMD2
PRRT2
MVP
PAGR1
TIMM10
RPL27
RBM25
TOMM20
NTN3
MYLIP
TXNDC11
RUNDC3A
KRTAP3-3
STAT3
IGFBPL1
ANK3
CD9
HNRNPA2B1
CBX3
DUX4
PHOX2B
TMC6
TMC8
SMAD5
JDP2
AKNAD1
DVL3
NES
MYOG
IL6ST
PRPF3
UNC5A
CD74
CAPRIN2
MED10
B3GNT3
FRG2C
GBA
TMEM91
CBFA2T2
MYL4
TNFAIP2
TLX2
SERTAD3
SNX1
CIAO2A
OCA2
NOCT
CNBD2
FAM222B
MTHFD2L
RAB26
METTL16
RMDN3
CHN2
CPVL
KTI12
COL23A1
CIPC
TSHR
TMEM244
METTL24
NFE2L1
PELI2
MAN2C1
PCGF3
F7
GRK5
SLC47A1
MEMO1
MTRNR2L2
MSH3
DHFR
CHRNA3
SEC22B
LGSN
AIG1
PSMD6
TRDMT1
TBPL1
HMCN2
ANKLE2
MEGF6
DBNDD1
PXYLP1
ZNF521
DCT
EYS
UFSP2
C4orf47
MBD6
DDIT3
GPRIN3
ARHGEF1
KLF7
PRADC1
CCT7
CILP
VMP1
PTRH2
CCDC33
GRIP1
RIMS3
RPS7
OMD
CKAP4
ARRDC4
CCDC167
SH2B1
SATB1
RCOR1
BRD4
OR6N1
MFSD6
UQCRC2
WFIKKN2
CMTR1
TRAP1
HPCA
IDUA
VPS50
HEPACAM2
GFRA2
RUNX1T1
H4C15
H4C14
HUS1
TRIOBP
CRTC2
NEDD4L
PAXBP1
SYNPO
TLE4
SIRT4
BAZ2A
VIP
RAB27B
FAM83E
SPHK2
RPL18
ACVR1C
SF3B2
GAL3ST3
RFTN1
ZNF629
FBXO7
EGR1
CDO1
DYNLT1
MGP
TLN1
CREB3
IFI16
PTPN13
ACVR1
SEPTIN9
ARID5A
TNFRSF19
HCFC2
GLT8D2
TUBB
MDC1
UBAP2
PAN2
IL23A
ID2
CDH7
WDR74
KCNK2
FRG2
CERK
TCF4
PRPSAP1
HDGF
MLF2
TCP1
MRPL18
CLTC
TMEM107
FARSA
CALR
BAIAP2
TBC1D16
CCDC40
DGKB
PCBD2
SULF2
LYSMD2
MRPL58
ZNF503
NEUROG2
ZGPAT
ARFRP1
PDE6B
NEUROG3
RARB
HES1
HES3
PDE12
SKIL
HOXA4
CDX2
IGFBP6
SOAT2
SPATC1L
CYP26A1
VEZT
FGD6
ARID3B
FZD8
NFE2
HOXA3
RARA
PMAIP1
IER3
FLOT1
SP2
ARHGAP10
NDUFS7
DHRS3
ZP4
NEUROG1
CCDC200
ATOH1
NEUROD1
KAT6B
DPP9
SPATA25
BNIP3
ERCC1
TLE3
LEFTY2
BBS9
IGFBP2
LBX1
TPM1
TRIP10
GPR108
NEURL2
CTSA
DNAJB7
H2AW
TTI2
HOXA2
ST18
HOXA1
TBX3
LIN28A
ASB2
ZNF746
INSM1
DUSP6
CDCA7L
TEPSIN
NDUFAF8
ERRFI1
DNM2
FGF19
TPRA1
FOXP1
HOXB3
P4HB
FBXO31
NPAS4
MINDY2
HPD
PRUNE2
ANKRD28
DLL4
SP5
TMEM70
ELOC
PDE4D
PDHB
SMAD3
CCNDBP1
MRPL34
DAPL1
CLGN
LPIN1
ARHGEF28
CAMTA1
RAB5B
ID3
KANSL3
FER1L5
TMEM120B
KIF21B
STX18
DCTN3
DLX4
TLE1
XKR7
ZFHX3
RXRB
PHC2
DONSON
DOLPP1
ARID3C
ANK2
HOXC4
PGK1
SLC39A7
ATF6
RBPJ
MSX1
OTUD7B
CCN1
MFSD10
UPF3A
PRRX1
KDM6B
KATNB1
PANK2
SMPDL3A
SQSTM1
LZTS1
TRIB1
CCDC174
PDZRN3
FRA10AC1
PPP6R3
ABHD2
ABCC10
RARG
NINJ2
ZNF687
SMARCD2
BCL3
POP5
RFX1
CLCN3
MYLK4
NR2F1
MTMR4
GATA4
GPCPD1
ID1
USP17L20
ZFHX4
NRL
ZNF367
PCGF2
NBPF1
KCNAB2
TOP2A
KDM2B
CCNL2
PSPN
ALKBH7
CNOT2
ANKHD1-EIF4EBP3
ANKHD1
MRPS31
SMG6
NUBP1
SACM1L
ADAP1
USP17L22
ITGAV
FOXP2
FURIN
NFKBIA
MIDEAS
TLE2
IQSEC3
POLDIP3
NR2F6
RNF103-CHMP3
RMND5A
DCAF11
HEXIM2
CNTN1
RASSF5
SP1
PKDCC
PCNA
ZFAND2A
ZNF608
OSBP
NLK
PPCDC
ABHD8
STIP1
EIF2AK3
KAZALD1
RNF207
DLG2
CSF3R
RHBDD1
HMGCS1
SOD2
AHDC1
LRATD2
MDM2
ATP5F1B
GADD45G
SLC45A4
RAB11B
KNL1
RBBP7
AGO1
G3BP1
LPCAT3
KMT5A
NCOA2
EVI5L
CITED2
KDM8
DSCAML1
RTN4
TRAF7
MACROH2A1
FTL
JUP
PRDM10
DDA1
HNRNPD
MALRD1
GPC6
SREBF1
POLG
FAM107B
SMIM20
MEIS2
SLC7A5
CRLS1
GRSF1
SOCS3
B4GAT1
TRIM46
LIG3
EVA1A
MYRIP
MTF2
SHF
MIDN
METTL11B
RGS12
RBFOX2
PLEKHG2
SPG7
ARHGAP24
CCL26
GLRX5
ANTKMT
SSBP4
FST
DAGLB
SLC6A12
LCK
FAM167B
GADD45A
CBX5
TMEM94
RGS3
ARAP1
KDM3A
INAVA
ZFP36
BFSP1
NCDN
KIAA0319L
PRMT5
NEK3
EIF3D
ATP6V1E2
SLC30A4
STAP2
ACYP1
MYEOV
HPCAL1
SH3YL1
ACP1
H3C12
H2BC17
H2AC17
DIABLO
FGR
ADM
MRPS28
PLEC
CYP51A1
RAB37
COX5A
STX1A
SERPINB1
SERPINE1
SNCG
MMRN2
HOXC6
LRCH4
FBXO24
RHOQ
CACNA1D
TCF7L2
ARID2
HMGB1
ANKMY1
CEP41
CIC
FRMD3
ARHGAP4
HNMT
CAPNS2
UGP2
CNKSR3
KMT2A
NKD1
CPT1A
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
ROGDI
DNAJB3
LTBR
BRMS1
MRPS24
SYNJ2
LAPTM5
ARHGEF10L
HOXC5
TES
PHETA1
RNF166
KCTD7
EFEMP2
LNPEP
RAC1
CDS2
INSM2
HOXB1
CSRNP1
MBD2
CMSS1
USP42
INAFM2
ARID4A
ANKRD1
DUSP9
ILF2
LFNG
PNKD
ARL8A
ZNF414
PLAGL1
TDRKH
TUBB4B
TXNRD1
HTR5A
AIFM2
EVPL
SEC14L1
SYTL3
HIBADH
DMBX1
IKBKB
WTAP
LMNA
ZNF76
LUC7L2
LRP5L
GTF3A
PRKACA
UBE2F
LAMP1
SORBS2
NRSN2
NR2C1
MSX2
KLHDC2
MT2A
IL6R
HOXB4
BHLHE40
RAI14
COMTD1
TCTEX1D4
BTBD19
IQGAP2
CFL1
C12orf73
TIGD1
EIF4E2
CPSF4L
TUBGCP3
CDK6
VOPP1
RBM15
SH2D6
UACA
ZNF77
CCDC88A
RNF34
USPL1
CCDC88B
RNF149
NRCAM
NEDD9
GSTP1
CR1L
RNPEPL1
TRABD2B
LRIG1
EPM2A
SH3BP2
IRF9
PIKFYVE
PIGV
ZNF3
H6PD
ING1
GOT1
TBL1X
PAX6
TMEM60
PHTF2
RASSF2
ZDHHC4
MYADM
EIF1B
CCL16
KRI1
CDKN2D
E4F1
ANKS4B
CBX4
NANP
USP3
KCNH7
CYB5R4
PRDM12
TF
METRN
DCAF7
NKIRAS1
KLF6
TRAF4
WDR97
MAF1
SCAP
NCOA7
ZNF595
ORMDL3
CRKL
SEMA5B
POLR3E
GFOD1
PKM
INHBE
NKX1-1
GPAA1
EXOSC4
YTHDF2
ZNF827
MARCHF3
CXXC5
STX16
ATP2B2
RNF144A
CASC3
CLK1
PC
ICAM1
ATG16L1
ERI3
SMIM11B
SMIM11A
CEBPE
TRIM7
CDC42EP3
RXRA
TSPAN4
POLR2L
NCBP2AS2
NCBP2
ENO1
SRSF2
SLC25A19
MFSD11
KPNA4
UGT1A1
FAAP24
CEP89
IRS1
GSN
PCTP
PARK7
HECTD4
UNC13D
ATP5MC1
TRAF2
PLEKHF2
TACC1
L1CAM
ANP32E
CELSR3
MPND
PXMP4
MPC1
TTC30B
GPT2
GGT1
NEO1
CCDC114
SH3BP4
HSP90B1
C14orf93
ZC2HC1C
SULF1
ETV4
PAQR8
UBE2C
SRCAP
LOC730183
GPATCH8
DGKZ
RHBG
ETFBKMT
CALM2
BRWD1
RTBDN
DBX1
LMO4
FAM24A
HNRNPC
TANK
GPR35
RAB17
LASP1
FLAD1
TMTC4
SLC25A6
ALDH4A1
ATP23
MPV17L2
CBFA2T3
MAP1LC3B
ABLIM3
UBXN10
SDSL
ADGRL2
SCYL1