ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX17639399 | NB-4
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◣ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

PDE6B
ZGPAT
ARFRP1
IER3
FLOT1
NFE2
SKIL
MTRNR2L1
PRAM1
LAPTM5
INAVA
KAT6B
SMIM20
COL23A1
MTRNR2L8
BABAM2
RBKS
C16orf54
RARG
LIMK1
NR2C1
ICAM1
UPF3A
KANSL3
FER1L5
CXXC5
SMG6
NOL4L
ZNF746
PPCDC
MTRNR2L2
MSH3
DHFR
SPDYE13
GH1
CEBPE
STX1A
ARID3B
CCDC88B
SRCAP
LOC730183
CCNDBP1
RNF166
FTL
SEPTIN2
HDLBP
NR2C2
ERCC1
SBF1
PCNA
CDS2
ARHGAP4
NDUFA4
ANKMY1
RNPEPL1
ZNF217
ARHGEF18
TXNDC11
ZNF414
CXCR4
RASGRP2
ACACA
ZNF740
CSAD
MFAP4
MTG1
PKN1
FRG2C
KAZALD1
ANPEP
NCOA4
SH2B1
ADAM17
ARIH2
CCL2
GPATCH8
SERPINB1
GPR35
CYTH4
CBFA2T3
LCOR
ANKRD18B
MYADM
TRPM2
BIN2
PICALM
ACTL9
EPM2A
COX5A
DUX4
NCOA2
MID1IP1
ANKRD10
TRIM8
ADGRG5
GSG1
EIF4A3
GALNT9
WNT10B
ZNF584
ZGLP1
MEF2D
BCL3
SHISAL2A
HPCAL1
CCDC114
EMP3
MRPL4
CTBP2
TMEM182
MFSD9
TPRA1
MED9
DRC7
PITPNM2
SH2B3
YARS1
S100PBP
PLIN2
INAFM2
PGLS
THAP11
NUTF2
CENPT
SH3BP2
NANP
GDPGP1
CIB1
ARL4A
AGTRAP
MRPS31
PDGFRB
CD38
OTUD7B
NAMPT
COX20
CCDC174
SRSF2
MFSD11
S100P
P2RY2
SPATA25
NEURL2
CTSA
LYL1
DNAJB1
E2F3
KRI1
CDKN2D
ZC3H4
KEAP1
GRK6
IDH1
CTBP1
FRG2
MAMDC2
KMT5A
PRELID3B
MACC1
MYRF
PXYLP1
ASB2
JUND
PIK3AP1
SQSTM1
FASTKD1
TMEM104
NAT9
FUT7
C9orf139
ABCA2
HES1
HBP1
MFN2
REPIN1
AP5B1
RFX3
TYROBP
PIM3
EEF1A1
ZCCHC24
ING1
MACROH2A1
GFOD1
NRDE2
MYEOV
MMP9
IGFBP6
SOAT2
PDCD4
CTTN
TTYH3
SIK1B
SIK1
TAGLN2
SCAP
PHF19
STK17A
CLDND2
NKG7
CEP41
CPSF4L
GTPBP6
ICAM3
SREBF1
ARID2
PLEK
SLC25A6
LRMDA
FMNL1
STON2
NIBAN3
TBL1XR1
OCEL1
CTCF
DBP
DHRS3
SOD2
MBD6
DDIT3
WTAP
SLC12A6
TRAPPC10
DZIP3
CIP2A
GYPC
LSM8
BOLA3
DIPK1A
MAMSTR
GRAPL
CBX4
CD300A
SPAAR
MAPK8
USP49
MRPL34
ABHD8
DDA1
ZNRD2
FAM89B
EHBP1L1
SYK
MIDN
PARP2
DNAJC16
CASP9
OAZ1
EGLN1
RAB3D
RAB11FIP2
RHOG
CYP2E1
RNF149
LTB
LST1
ARSG
BAZ1B
POLD2
MAP3K8
SRXN1
ICAM5
ICAM4
GPCPD1
WDR12
CARF
DENND4B
DNAJB2
MYO18A
LOC388282
MYO1G
ESRRA
RARB
BAIAP2
RREB1
PKN2
RBM7
C11orf71
VPS37C
MAP1LC3B2
TOX2
UCP2
KMT2E
PPP1R12C
UBE2R2
ATXN2
TRERF1
ANTXR2
C15orf62
COMTD1
ROM1
EML3
RAB37
MAP2K3
PACC1
KRAS
GATD3B
GATD3A
TRAM1
HESX1
APPL1
NCF1
OR6B2
NDUFA10
RAB11FIP1
HRH1
EVPLL
SPAG8
HINT2
RAC2
HUS1
RASSF2
TSKU
TAF1A
NR4A3
SLC25A35
BPI
ASB1
NRL
DCAF11
ZBTB45
AFF1
AZIN1
PIK3R1
USP37
CNOT9
ADPRHL1
FBXO31
STX18
MAP1LC3B
PTTG1IP
IPPK
LFNG
PCTP
SYPL1
RFC5
PDLIM7
AXL
SLC3A2
M6PR
KLRG1
HHEX
PRXL2B
REL
PPP1R27
MCRIP1
NPBWR2
S1PR2
TSPAN32
C11orf21
AFG1L
CCDC102A
CD248
NOTCH1
AKAP10
CHI3L1
CPQ
MPRIP
CD82
BLOC1S5
PHC2
ZNF595
AP1B1
HNRNPA2B1
CBX3
SPNS3
TCTEX1D4
BTBD19
PPP3CB
DENND2D
PDSS2
STING1
BHLHE40
UPP1
ZNF438
UMODL1
RARA
CETP
FARSA
CALR
SLX1B
SLX1A
BOLA2B
BOLA2
SPATA1
GNG5
SULT1A4
SULT1A3
SECISBP2
CCDC9
DARS1
SP1
KLF3
TM7SF3
RIN1
SPIN1
BAG2
ZNF446
CD1C
RBPJ
RASSF4
ATP11A
NIPSNAP2
CNOT2
SOCS5
PEX14
DFFA
BOLA2-SMG1P6
C5AR2
SH2D3C
CDK9
XPNPEP1
NME6
AP2S1
ZNF335
RABL2B
RABL2A
RWDD1
PSMD1
MAPKAPK5
TAOK3
SUDS3
CACTIN
NUP85
POLR3F
DZANK1
FAM187A
EFTUD2
CCDC103
NVL
IPO13
DYNC1LI2
VDAC2
HSPA9
GOSR2
VTI1B
PSMG2
CEP76
POLR2E
NUP205
MRPS7
GGA3
HADHB
HADHA
RPL21
NCLN
TBCK
AIMP1
EXOSC5
BCKDHA
C19orf48
BLCAP
DCTN1
TSNAX
REXO1
ATP5MG
SLC35B1
STAM
TSN
STAM2
SEC61B
ALG2
FARSB
PSMD12
LYRM4
FARS2
SRD5A1
PNO1
PES1
PAK1IP1
C6orf52
RBBP5
UPF2
SKP1
ZNF576
IRGQ
ZNF503
COX7A2L
CAPRIN1
SART3
ISCU
ACTR10
ZRANB2
TTC8
GOLGA5
SUPV3L1
IQCG
DPH6
VARS1
PI4KB
TMED1
RPL35A
RPS23
ATP6AP1L
RPS12
SMC2
ANAPC7
MRPS5
FAM104A
C17orf80
RABGGTB
SELENOF
HS2ST1
USP1
PCBP1
PDAP1
BUD31
EIF4ENIF1
UFM1
ADK
XPNPEP3
ST13
RPS27A
CLHC1
AP3M1
ICE1
APOM
BAG6
PROSER1
NHLRC3
COMMD1
CCT4
SF3B3
COG4
OSGEP
APEX1
RPS29
PAF1
TM9SF1
NEUROG2
NFKBIL1
DDX39B
ATP6V1G2
LRR1
NEUROG3
PTGES2
PIN4
SUCLG1
OAZ3
MRPL9
UBE2I
HES3
PDE12
ARHGAP11A-SCG5
ARHGAP11A
TAF9
RAD17
AK6
STK36
RNF25
MRTO4
EMC1
HOXA4
CDX2
SPATC1L
CYP26A1
VEZT
FGD6
FZD8
SEC11C
EIF2S3
GADD45GIP1
RPL7
RDH10
BICRA
SYBU
HOXA3
CDC73
PMAIP1
ID2
SP2
TMEM107
ARHGAP10
C16orf91
RPN1
NDUFS7
GTF3C4
DDX31
ZP4
GORAB
NEUROG1
CCDC200
ATOH1
NEUROD1
CNPY2
DPP9
BNIP3
TLE3
ZNF383
LEFTY2
BBS9
IGFBP2
LBX1
TPM1
TRIP10
GPR108
TLE4
DNAJB7
MRPL38
SPCS1
GLT8D1
H2AW
PHOX2B
TTI2
PDHX
APIP
WDR74
HOXA2
ST18
HOXA1
TBX3
LIN28A
INSM1
DUSP6
PCGF1
LBX2
CCDC33
CDCA7L
METTL24
TEPSIN
NDUFAF8
ERRFI1
PCBD2
DNM2
FGF19
FOXP1
ANKLE2
HOXB3
ALKBH5
P4HB
RUNX1T1
TBX2
NPAS4
MLEC
MINDY2
HPD
PRUNE2
TNFRSF19
CS
ANKRD28
DLL4
RPS10-NUDT3
RPS10
SP5
TMEM70
ELOC
PDE4D
PDHB
SYNPO
AXDND1
SMAD3
DAPL1
CLGN
LPIN1
ARHGEF28
CAMTA1
RAB5B
ID3
TMEM120B
KIF21B
DCTN3
DLX4
TLE1
XKR7
ZFHX3
RXRB
DONSON
DOLPP1
ARID3C
ARRDC4
ANK2
RPS24
POLR3A
HOXC4
PGK1
SLC39A7
HSPA1B
CBFA2T2
ATF6
MSX1
SIRT4
CCN1
NELFA
MFSD10
PRRX1
KDM6B
KATNB1
PANK2
SMPDL3A
LZTS1
TMEM101
TRIB1
PDZRN3
FRA10AC1
PPP6R3
ABHD2
ABCC10
NINJ2
ZNF687
SMARCD2
POP5
RFX1
CLCN3
MYLK4
NR2F1
MTMR4
QPRT
GATA4
ID1
USP17L20
ZFHX4
SRSF11
ZNF367
PCGF2
NBPF1
KCNAB2
TOP2A
KDM2B
CCNL2
PSPN
ALKBH7
ANKHD1-EIF4EBP3
ANKHD1
LRRC40
NUBP1
SACM1L
ADAP1
USP17L22
DYNLT1
ITGAV
FOXP2
FURIN
NFKBIA
MIDEAS
TLE2
IQSEC3
POLDIP3
NR2F6
RNF103-CHMP3
RMND5A
HEXIM2
CNTN1
RASSF5
PKDCC
ZFAND2A
ZNF608
OSBP
NLK
STIP1
EIF2AK3
RNF207
DLG2
CSF3R
RHBDD1
HMGCS1
AHDC1
LRATD2
MDM2
ATP5F1B
GADD45G
SLC45A4
PSMD6
RAB11B
KNL1
RBBP7
AGO1
G3BP1
LPCAT3
EVI5L
CITED2
KDM8
DSCAML1
RTN4
TRAF7
JUP
PRDM10
HNRNPD
MALRD1
GPC6
POLG
FAM107B
MEIS2
SLC7A5
DLC1
CRLS1
GRSF1
SOCS3
B4GAT1
TRIM46
LIG3
EVA1A
MYRIP
MTF2
SHF
METTL11B
RGS12
RBFOX2
PLEKHG2
SPG7
ARHGAP24
TPCN1
SEPTIN9
CCL26
GLRX5
ANTKMT
SSBP4
FST
DAGLB
SLC6A12
LCK
FAM167B
GADD45A
CBX5
TMEM94
BAHCC1
SEC22B
CCDC43
RGS3
ARAP1
KDM3A
ZFP36
BFSP1
NCDN
KIAA0319L
PRMT5
NEK3
EIF3D
ATP6V1E2
TLN1
SLC30A4
CREB3
STAP2
ACYP1
SH3YL1
ACP1
H3C12
H2BC17
H2AC17
ABCA4
DIABLO
FGR
ADM
ZBTB18
MRPS28
PLEC
CYP51A1
SERPINE1
SNCG
MMRN2
HOXC6
LRCH4
FBXO24
RHOQ
CACNA1D
GMEB2
TCF7L2
HMGB1
CIC
FRMD3
HNMT
ARID5A
CAPNS2
UGP2
CNKSR3
KMT2A
NKD1
CPT1A
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
ROGDI
DNAJB3
LTBR
KIAA0319
BRMS1
MRPS24
TRDMT1
SYNJ2
ARHGEF10L
HOXC5
TES
PHETA1
KCTD7
EFEMP2
LNPEP
RAC1
INSM2
EIF4H
HOXB1
CSRNP1
MBD2
CMSS1
USP42
ARID4A
ANKRD1
DUSP9
ILF2
PNKD
LIMA1
ARL8A
IFI16
PLAGL1
TDRKH
TUBB4B
TXNRD1
HTR5A
AIFM2
EVPL
SEC14L1
SYTL3
HIBADH
DMBX1
CERK
IKBKB
LMNA
ZNF76
LUC7L2
LRP5L
GTF3A
PRKACA
UBE2F
LAMP1
SORBS2
NRSN2
MSX2
KLHDC2
MT2A
IL6R
NRM
HOXB4
SLC35A3
RAI14
IQGAP2
CFL1
C12orf73
TIGD1
EIF4E2
TUBGCP3
CDK6
VOPP1
RBM15
SH2D6
UACA
ZNF77
CCDC88A
RNF34
USPL1
NRCAM
NEDD9
GSTP1
CR1L
NRXN1
TRABD2B
LRIG1
IRF9
PIKFYVE
PIGV
ZNF3
H6PD
GOT1
TBL1X
PAX6
TMEM60
PHTF2
ZDHHC4
EIF1B
CCL16
E4F1
ANKS4B
USP3
KCNH7
CYB5R4
PRDM12
TF
METRN
DCAF7
NKIRAS1
CHD8
KLF6
TRAF4
WDR97
MAF1
NCOA7
ORMDL3
CRKL
SEMA5B
OPRM1
POLR3E
PKM
TUBB
INHBE
NKX1-1
GPAA1
EXOSC4
YTHDF2