ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX8814876 | Neuroblastoma
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◣ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ATF6
COMTD1
GPR68
TBX2
ENOX1
CNKSR3
IKBKB
C6
KPNA4
ZNF804A
HNMT
DAOA
HAPLN2
KCNJ6
PSMD6
HHAT
DGKB
TBX3
MTRNR2L2
MSH3
DHFR
CBFA2T2
SEMA5B
TTC30B
MGAT5
KBTBD11
PDE3A
TEX101
CYP51A1
ADAMTS18
RWDD1
VIP
CXCR4
GLYAT
IGFBP3
SMIM30
FRMD3
ABCA12
HTR4
PDZRN4
C9orf92
PKIB
C1orf87
KCTD7
MARCOL
TES
UGP2
MYRFL
RBFOX3
TNFRSF19
SLC12A3
CLCN3
CDH18
NT5DC1
MSRB2
KRT82
CPO
FOLH1B
KIAA0319
CDK6
QPRT
SCML4
LMO4
LEPR
NUBPL
MYT1L
PLAC8L1
NELL1
HABP2
PACRGL
OPRM1
FEZF2
MFSD6
RARB
MTRNR2L8
SYBU
EHF
BEND4
FAM228B
PFN4
DIABLO
RGS8
ABHD2
HAO1
KCNV1
BANK1
PTPRB
TLE4
ARHGEF28
FYB2
ADGRL2
SYTL3
RNF34
DCTD
PTPDC1
IGFBP5
TPH2
SLC28A3
SRGAP3
KCTD8
ACTA2
HS3ST5
PSME3IP1
MMP15
ANO3
TMTC2
NRXN3
RARA
PDHA2
THSD7A
TYRP1
CCDC178
PLAC1
BIN1
DEFB130B
DEFB130A
OLFML1
NRXN1
COL3A1
ZNF335
CILP
SH3RF2
IGDCC3
PDE4B
GADD45A
MME
GCSAM
LIMA1
ZFPM2
EGLN3
PKDCC
C14orf93
SULF2
LINGO2
LMCD1
HPGD
PDZRN3
GRWD1
ATP8A1
PTPRE
DLG2
SLC37A3
ABCA4
DMD
GRK5
CRKL
CELF2
GFRA3
NRSN1
NRP1
IQCG
RPL35A
C1orf185
ZNF148
SPARCL1
PMFBP1
GBP4
MTRNR2L1
SH3D19
COL10A1
FRA10AC1
SETD7
FREM1
PTPN20
SYT4
DOCK10
GK2
RGPD1
RGPD2
GSC
RPS29
DNAAF2
ZMYM1
SULT1C4
WNT5A
ZNF3
COPS6
POLR2E
KAZN
PWWP3A
PRLHR
EVPL
NBN
GPR162
CSRNP3
DCC
PXYLP1
KCNIP1
GOSR2
ADRB3
ABRA
GPR75-ASB3
GPR75
SLC6A5
GAST
TRDMT1
NCAM2
RABL2B
PCDH8
GHITM
GCNT7
FAM209A
OSR1
FAM187A
EFTUD2
CCDC103
N4BP3
PCDH9
HCN3
CLK2
VAV3
EXOSC5
BCKDHA
TPD52
ACKR4
BCL2L14
MDFIC2
UBL4B
CDH12
KCNK2
SGCE
NECAB1
CLGN
TSHZ1
OSBP2
TVP23C
DAPP1
CERK
IGFBPL1
RP1L1
SOX5
PLET1
ATP23
CHRDL2
IFNL4
RABGGTB
MRTFA
PRG2
CADM2
SNCAIP
KLHL1
PES1
MAGEB5
HIGD1C
ITGAV
CD74
TMED1
ID2
SCG2
ACACB
PPARGC1A
PACSIN3
IRAK2
ZFHX3
SCCPDH
LNPEP
ZNF330
ANKRD28
HADHB
HADHA
MTNR1A
LMO7
SYT16
CNTN5
EPYC
TAOK3
SUDS3
FAM124A
PSPH
CCT6A
MYH15
SUPT20HL2
DOCK9
FGD5
TMEM17
JDP2
DOC2B
RABL2A
APOH
POU4F2
NOD1
GPER1
NCR2
RFPL1
ZFHX4
FBXO34
ELAVL4
SRSF10
TMEM107
GLI3
CALHM5
KMT5A
SH2D4B
DIPK1A
LRRC43
GAB2
TRIB2
ST3GAL6
COX7A2L
JUP
LRIG3
UNC5C
MTRF1
NAA16
GABRG2
ZNF608
B3GNT4
TMEM229B
ARHGEF10L
RASL10B
RPS12
B3GNT3
TUBE1
FAM229B
C3orf85
METTL24
MAPK1
CRYGB
SEC22B
PIK3C2G
PCSK1
SIPA1L1
PCGF1
LBX2
CABCOCO1
GPR19
TEAD1
RBFOX2
PAM
RIMS1
ARID5A
AGR3
RMDN3
UFM1
OTOGL
OGFOD2
ABCB9
PLXNA1
SLC17A2
DLC1
IL24
DEGS2
OAZ3
MRPL9
GPR1
FYN
ATP6V1G3
CHST1
LOC283710
MRPS7
GGA3
CDH4
MLH3
CHST6
HSD17B12
TDO2
RAG1
RHOBTB2
APC
HPD
PSMD9
MAD2L2
ESRRG
NUP85
B3GAT1
GPR22
PAPOLB
NALCN
USH2A
FGF19
IL17F
CLVS2
SMAD3
CLDN12
SMC3
SMTNL2
RGS13
ZNF503
RPS7
DENR
MARCHF9
CDK4
LIPK
TTC39A
GTF3A
MYT1
ASB6
SBNO1
POTEI
CHRNA9
SART3
ISCU
HORMAD2
MLIP
TRPA1
STN1
NRCAM
RPS23
ATP6AP1L
FAM107B
LHFPL6
C3orf49
SORBS2
AGPAT4
GLCCI1
GPR88
ERN1
AVIL
SEC61B
ALG2
LRRN4
RBM20
MAPK10
KLHL32
C1QL3
ERVMER34-1
CACTIN
RSPH1
PARP14
CASD1
NUP205
ZNF77
BLCAP
SNAPC1
DDR2
VSIG8
CREB5
COPB2
SNCG
MMRN2
SUCLG1
UPF2
TXNRD1
KCND2
FAM135B
PSMD1
NOMO3
NOMO1
TCF4
ITGA4
SOCS6
GPR34
RPL21
FAM104A
C17orf80
ADK
AP3M1
HOXA3
FAM151A
TMOD1
MAGEB10
TLE3
SHMT2
SLC10A4
FMN1
FNDC7
AQP4
SLC25A30
RAMP1
SOHLH2
PI4KB
RBBP5
MAF
TPM1
GGT1
TNFSF13B
ZRANB2
MGARP
LIMS1
STK36
RNF25
SH3BP4
TRIL
ABLIM1
BBS9
IFRD1
POLR2M
FGF1
RIPOR2
PNO1
GPBAR1
HCRTR2
SCRG1
SRPK2
FARSB
DNAH8
SCN1A
PPFIBP2
DCTN1
PRXL2A
ARL6IP5
UBA3
SMAD1
CCDC68
SLC35B1
RAB3D
TMEM205
CCDC159
GALNT15
DDIT4L
TTC8
FRG2C
SYNE3
STARD13
TYRO3
PM20D2
SCGN
OR2AE1
LIG3
ANTXR2
GNA12
CNTNAP4
NCDN
KIAA0319L
KIF26A
TTC12
PYROXD2
CSRP2
ERI3
PCM1
SLC10A6
TVP23B
FAM72A
MEGF6
PRL
SYNPO
SMAD2
LRRN3
ERAP1
MYF6
MYF5
TRPM3
NVL
ECT2L
WT1
FAM160A1
HOXC4
HOXC6
LRRC8B
SLAMF8
KCTD3
SACS
SUPV3L1
LIX1
MGP
FRZB
FNIP2
RAI14
PSMD12
BMPR1B
SF3B3
COG4
CHRNA3
MAP2
BDNF
HTR3B
CCT2
KNTC1
PLAAT4
REXO1
DNAJB8
ARID3B
EVA1A
THEMIS
PGM5
B3GAT2
FAM162B
METTL7A
CCDC200
SMLR1
MARCKS
ABR
TMC3
AOPEP
RGS18
KLK3
TSNAX
ANAPC7
SLC22A8
GOLGA5
TTI2
UBTFL1
LUM
ANGPT1
ECE1
KLKB1
CYTIP
RNF111
ELAPOR2
SGSM3
PROSER1
NHLRC3
CAAP1
FRMD6
MEIS2
NFIB
C22orf34
TRPC7
PHOX2B
DUSP6
GABRR1
PTPRR
SLC13A1
FAM110B
CD9
NOX5
RUNX1T1
RAB27B
PCDH15
ANKS1B
CAPN14
FAM219A
DNAI1
OSBPL6
DISP3
BRSK2
KCNE4
LYRM4
FARS2
VRK2
SSUH2
CORO2A
POTEJ
MXRA7
EPSTI1
DAZAP2
SHD
RASSF5
VWA2
PRRX1
DUX4
POF1B
BAZ2B
APLP2
CDC42EP3
GTDC1
CDC7
AGTR1
TUBB8
MFAP4
MAMDC2
TBR1
PRICKLE2
EIF3D
AKAP1
TSFM
PAK1
OR5H1
ANKRD33B
SLC8A1
SSR3
FBXO7
CFC1B
EPHA7
FIGN
MEI4
GRAMD4
NEK7
HLF
PRDM9
CRTAP
REC8
UBR4
BAZ2A
TMEM131L
STAC2
DYNC1LI2
HEXIM2
ERICH2
KIF25
STAM
FOXC1
VPS33A
CDK2AP1
TSPAN2
KCNJ2
C19orf48
APOM
BAG6
SRP14
DAB2IP
NDUFA4L2
FAM24B
TSHZ3
KCNK15
PTER
CDIN1
SLC16A7
MDM1
RERG
PLSCR5
TECTA
SELENOF
HS2ST1
CAPNS2
KLHL6
SCG5
CD302
TMEFF2
PID1
LRGUK
SULT6B1
CEBPZOS
PLEKHA6
KCNJ16
MLLT11
CDC42SE1
HEXB
CCKAR
VDAC2
ELK3
SH3BP5
SRD5A1
MAGEB4
MAGEB1
PDAP1
BUD31
TSSK1B
STAMBPL1
MDM2
PIPOX
SLC7A14
PROKR2
ARPP21
CAPRIN1
NUP107
DNAJC15
CCDC177
SCHIP1
MID1
SMIM28
SERTAD4
FBXL16
CAPN2
PPARG
WDSUB1
ESRRB
SRGN
TBL1X
IMMP2L
FNDC5
ALK
NOX4
ASIP
PDE8B
SLC26A7
NRP2
NOS1
CNTN6
PAQR6
NWD2
ID1
MXD1
DNAJC12
GJA5
CCK
DYNLT1
SLC35F3
CPSF6
RPS24
POLR3A
RIMS2
ACYP1
CYP20A1
CRABP2
FAM163B
GNAS
HSPA9
PHC2
KIF1A
CCDC174
HSP90AA1
SSH1
WDR20
KCNN3
MPP4
FLRT3
USO1
RIIAD1
CELF3
ZNF576
IRGQ
ENPP2
PKIA
PI15
DSEL
IRF2BP2
CCDC183
CYP2S1
TMEM196
SLA
ICA1
NDNF
IPO13
CFC1
VANGL2
RFTN1
FAM241A
OSGEP
APEX1
TGFB2
NEO1
LRRC69
FHL2
HOXC5
WSB1
SLC25A12
LRRTM4
HAUS6
LINC01638
SCRT2
ARHGEF2
FGL1
HGD
STAM2
HYKK
HAND2
HS6ST3
OVCH2
KCNIP4
LNX1
RPP25
POFUT1
PLAGL2
KRT17
CCSER1
PDE1A
DDAH1
PRCD
NREP
SOX6
LSMEM1
GDF5
TCF7L2
NCAPG
DZIP3
CIP2A
AKAP12
HMGCLL1
SEPTIN9
RNF113B
TBC1D23
SLC6A2
SULF1
TM4SF1
AGAP2
TSPAN31
VCY1B
VCY
ACTR10
ZCCHC8
COLQ
TMEM101
CASP7
TLL1
MCU
TNFAIP2
NUAK1
CHD1L
PRKAB2
TFPI
BCAS1
FRG2
MAP1B
GPCPD1
ANK3
FRS2
NUMB
S1PR2
TRIM24
S100A5
S100A6
SNX6
RNF145
C1QTNF7
TRAF3IP3
ERBB4
SMC2
CYTH1
BCO2
SUMO4
RAPGEF2
AHNAK
ZNF792
TTC13
GRAMD1B
BCAT2
SETD1B
C12orf65
RPS27A
CLHC1
AFF3
JMJD1C
SEPTIN11
ACVR1
IDE
TSHZ2
ZFAND6
PBX1
CELA2A
HECW2
SLC25A44
NUDT7
JARID2
PRKCQ
ABCC3
TENM3
CAV2
PPM1D
MMRN1
OSBPL7
ZMYND11
PLCH2
ZBTB18
ANK1
KIF6
MRPS5
MTUS1
SNX22
NKX6-1
ARHGAP11A-SCG5
ARHGAP11A
ADGRD1
STOM
GUCY1A1
LIPC
HTR1F
FAM71B
CABLES1
MGAT4C
CRYBB1
ERMP1
SPATS1
ETV1
POLR3F
DZANK1
NFKBIL1
DDX39B
ATP6V1G2
ABCB1
TM2D1
ANKDD1B
ACOT11
JAKMIP2
PAK1IP1
C6orf52
BEND7
EPAS1
COLEC11
DIP2C-AS1
MSX2
ALDH1A2
SKAP1
CTDSP2
TRIOBP
C12orf42
LRRC18
NCLN
HDAC9
PCDHAC2
PGM1
PPP1R3D
FAM217B
FTCDNL1
POU5F2
PDE12
LAPTM4B
NES
HTR2C
SIRT4
TMC6
TMC8
MAP3K3
CNBD2
CHODL
IPMK
CISD1
CCBE1
KAT6A
NOMO2
NFIA
ADI1
TOM1L1
HOXD8
MAP4
ANO4
TM4SF18
PRKAG2
SNAP47
SATB1
SAMD13
GASK1B
SKP1
ZNF251
DGKE
C17orf67
SLC44A5
SPAG9
IL19
ZNF235