ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584310 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◣ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

PSMD1
ZNF335
RABL2A
NME6
RABL2B
NUP85
CACTIN
MAPKAPK5
IPO13
VDAC2
VTI1B
POLR3F
DZANK1
NVL
HSPA9
PSMG2
CEP76
TAOK3
SUDS3
DYNC1LI2
FAM187A
EFTUD2
CCDC103
GOSR2
RWDD1
NUP205
LYRM4
FARS2
TBCK
AIMP1
SRD5A1
RPL21
BLCAP
REXO1
HADHB
HADHA
EXOSC5
BCKDHA
POLR2E
MRPS7
GGA3
STAM
C19orf48
PES1
STAM2
NCLN
FRG2C
UPF2
ATP5MG
DCTN1
SKP1
ANAPC7
FARSB
TSNAX
ZNF576
IRGQ
TSN
SART3
ISCU
PNO1
TTC8
ZRANB2
SEC61B
ALG2
COX7A2L
RABGGTB
PDAP1
BUD31
XPNPEP3
ST13
ZNF503
CAPRIN1
SMC2
PCBP1
SF3B3
COG4
TMED1
VARS1
HOXA4
PI4KB
RBBP5
SMPDL3A
NDUFA4
ACTR10
IQCG
RPL35A
PROSER1
NHLRC3
RPS27A
CLHC1
RPS23
ATP6AP1L
SELENOF
HS2ST1
GOLGA5
FZD8
EIF4ENIF1
SLC35B1
DPH6
LBX1
PSMD12
UFM1
OSGEP
APEX1
PAK1IP1
C6orf52
ADK
AP3M1
MRPS5
FGF19
RPS12
ANK2
NFKBIL1
DDX39B
ATP6V1G2
BABAM2
RBKS
SUPV3L1
APOM
BAG6
ARHGAP24
USP1
DUX4
NEUROG2
FAM104A
C17orf80
HES3
ABCG2
ICE1
ARHGAP11A-SCG5
ARHGAP11A
TLE1
TM9SF1
FOXP2
RPS29
LRR1
TMEM120B
MYLK4
DBX1
PTGES2
SUCLG1
TLE4
EVA1A
LRATD2
NCOR2
PCDH11Y
COMMD1
CCT4
PDE1B
TMEM14A
C16orf91
PIN4
DCTN3
ARID3C
OR6B2
NDUFA10
FRG2
PAF1
SYNPO
SEC22B
RPL7
RDH10
TRIM71
ATOH1
PDZRN3
PDHB
PRUNE2
BNIP3
KITLG
MSX1
METTL11B
PRDM13
TPM1
WT1
HES1
PIM1
RGS12
VEZT
FGD6
FOXD3
RND3
TRABD2B
CCN1
PRDM12
LRIG3
TMEM107
KCNK16
PDHX
APIP
LRAT
MRTO4
EMC1
MEIS2
SPTBN1
USP17L20
USP17L22
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
CD69
TPO
SH3BP5
NEUROD1
DAPL1
ZFHX4
DTX4
TAF9
RAD17
AK6
STK36
RNF25
IGFBP2
AGPAT3
ID2
OAZ3
MRPL9
CEP41
CDX2
ERRFI1
ZCCHC13
EIF2S3
GALNT14
HOXB3
HOXB4
SOX21
AGMO
C10orf90
FHL1
RBP3
PDE6B
HOXA3
SPACA1
SEMA4D
NRARP
ZNF608
OTUD6A
PMAIP1
CTXN3
ID1
B3GALT2
GPR176
NEBL
TRMT9B
RAI14
NEUROG3
GORAB
ATOH8
SEC11C
DHRS3
CACNA1D
CCDC88C
LIMK2
KIF21B
VAV3
RSPH9
CETN1
MXI1
TEX2
KCNK10
PRRX1
DMRT3
HOXD3
HPS1
IL17B
TPRA1
GUCY2C
PDE12
HOXA2
BAIAP2
NTM
CCDC200
SLC7A5
JAKMIP1
TLE3
PPP1R12B
CCDC198
ZGPAT
ARFRP1
SKIL
RARA
CNPY2
POP5
HMX2
SPIRE1
ACVR1
C1orf105
NXPH4
KLB
LRGUK
MTMR7
ELAPOR2
UBE2I
TLE2
PGPEP1L
NEUROG1
BFSP1
CEBPD
SLA
OSER1
CDC73
LMO1
GTF3A
NUTM2D
PAM
DDX3X
NPAS1
TSPAN13
GSX2
REV3L
BICRA
HOXC5
SNRPN
FLVCR2
MXRA7
CHD7
OR5A2
LRIG1
FGD3
GADD45GIP1
POU2F2
ERCC1
PHC2
DLG2
PPFIBP2
ZNF746
NEO1
PRRC2C
TPST2
CLEC18C
CDH16
FGFR2
CRABP2
DMBX1
SCARF1
PCBD2
MNX1
FOXP1
SSBP2
ITIH4
MUSTN1
TMEM237
TRPM3
ST18
RUNX1T1
DMD
TTR
EBF3
ZFX
PPP1R3D
FAM217B
PLCH1
MRPL38
HDAC9
ST8SIA3
TBX3
RGL1
CYP26A1
USP17L21
USP17L12
USP17L11
HOXC4
ZNF383
ID3
DSCAML1
USP17L18
USP17L19
PHOX2B
GNG12
METTL24
ZNF367
PREX2
TNFRSF19
ELMOD2
RPN1
USP17L15
FMN2
GTF3C4
DDX31
CLDN2
SYBU
MEF2C
RAN
FSTL1
ALKBH5
DONSON
SLC2A9
MEIS3
LHX2
CNN3
SPCS1
GLT8D1
SLC39A14
TMPPE
GLB1
RCOR3
HNF1A
HPD
CS
CAMTA1
CHD8
MAB21L2
LMO2
FAM181A
KLHDC7A
GPSM3
PBX2
HNRNPA2B1
CBX3
CHMP4C
CLRN1
NR2F1
IPO11
NXT1
ARHGAP10
RCOR1
B3GALT5
ZNF853
QPRT
DLL4
PDPN
LIX1
MS4A4A
CASC3
RARB
PCDH18
LIN28A
REC8
VANGL2
VSTM2L
LGALS12
NEK3
LRRC10B
KRTAP12-1
CCDC33
KMT2A
IGFN1
NRCAM
CLEC18B
CATSPERG
FAM162A
CCDC58
CPLX1
TSPAN11
AXDND1
VOPP1
CDRT15L2
KIF26A
CNTN1
MMRN1
NEUROD4
ABAT
CFAP221
SH2B1
HRG
ARHGEF28
OAZ2
PHTF1
DDO
LMO3
SRSF11
LRRC40
FGF10
TRDMT1
GSTP1
DSE
FGFR4
TSPYL1
ARHGEF1
MYLK3
RASSF10
PRSS47
KAT6B
PAX8
DUSP2
GCSAM
DCDC2
MAD2L2
DRAXIN
SPOCK2
CDH18
LOC102723360
WBP1L
MECOM
OMD
GAS2L3
BAHCC1
SOX6
ADM
IGFBP6
SOAT2
SH3BP4
DUSP4
PEX2
ANKRD6
ID4
SIRT4
HNRNPD
FRS2
FAM107A
JUN
TP53INP1
MTRNR2L1
MTRNR2L2
MSH3
DHFR
MTRNR2L8
SPATC1L
ARID3B
NFE2
IER3
FLOT1
SP2
NDUFS7
ZP4
DPP9
SPATA25
LEFTY2
BBS9
TRIP10
GPR108
NEURL2
CTSA
DNAJB7
H2AW
TTI2
WDR74
HOXA1
ASB2
INSM1
DUSP6
PCGF1
LBX2
CDCA7L
TEPSIN
NDUFAF8
DNM2
ANKLE2
COL23A1
P4HB
TBX2
FBXO31
NPAS4
MLEC
MINDY2
ANKRD28
RPS10-NUDT3
RPS10
SP5
TMEM70
ELOC
PDE4D
HUS1
SMAD3
CCNDBP1
MRPL34
CLGN
LPIN1
RAB5B
KANSL3
FER1L5
STX18
DLX4
XKR7
ZFHX3
RXRB
DOLPP1
ARRDC4
RPS24
POLR3A
PGK1
SLC39A7
HSPA1B
CBFA2T2
ATF6
RBPJ
OTUD7B
NELFA
MFSD10
UPF3A
KDM6B
KATNB1
PANK2
SQSTM1
LZTS1
TMEM101
TRIB1
CCDC174
FRA10AC1
PPP6R3
ABHD2
ABCC10
RARG
NINJ2
ZNF687
SMARCD2
BCL3
RFX1
CLCN3
MTMR4
GATA4
GPCPD1
NRL
PCGF2
NBPF1
KCNAB2
TOP2A
KDM2B
CCNL2
PSPN
ALKBH7
CNOT2
ANKHD1-EIF4EBP3
ANKHD1
MRPS31
SMG6
NUBP1
SACM1L
ADAP1
DYNLT1
ITGAV
FURIN
NFKBIA
ARSG
MIDEAS
IQSEC3
POLDIP3
NR2F6
RNF103-CHMP3
RMND5A
DCAF11
HEXIM2
RASSF5
PXYLP1
SP1
PKDCC
PCNA
ZFAND2A
OSBP
NLK
PPCDC
ABHD8
STIP1
EIF2AK3
KAZALD1
RNF207
CSF3R
RHBDD1
HMGCS1
SOD2
AHDC1
MDM2
ATP5F1B
GADD45G
SLC45A4
PSMD6
RAB11B
KNL1
RBBP7
AGO1
G3BP1
LPCAT3
KMT5A
NCOA2
EVI5L
CITED2
KDM8
RTN4
TRAF7
MACROH2A1
FTL
JUP
PRDM10
DDA1
MALRD1
GPC6
SREBF1
POLG
FAM107B
SMIM20
DLC1
CRLS1
GRSF1
SOCS3
B4GAT1
TRIM46
LIG3
MYRIP
MTF2
SHF
MBD6
DDIT3
MIDN
RBFOX2
PLEKHG2
SPG7
TPCN1
SEPTIN9
CCL26
GLRX5
ANTKMT
PKN2
SSBP4
FST
DAGLB
SLC6A12
LCK
FAM167B
GADD45A
CBX5
TMEM94
CCDC43
RGS3
ARAP1
KDM3A
INAVA
ZFP36
NCDN
KIAA0319L
PRMT5
EIF3D
ATP6V1E2
TLN1
SLC30A4
CREB3
STAP2
ACYP1
MYEOV
HPCAL1
SH3YL1
ACP1
H3C12
H2BC17
H2AC17
ABCA4
DIABLO
FGR
ZBTB18
MRPS28
PLEC
CYP51A1
RAB37
COX5A
STX1A
SERPINB1
SERPINE1
SNCG
MMRN2
HOXC6
LRCH4
FBXO24
RHOQ
GMEB2
TCF7L2
ARID2
HMGB1
ANKMY1
CIC
FRMD3
ARHGAP4
HNMT
ARID5A
CAPNS2
UGP2
CNKSR3
NKD1
CPT1A
ROGDI
DNAJB3
LTBR
KIAA0319
BRMS1
MRPS24
SYNJ2
LAPTM5
ARHGEF10L
TES
PHETA1
RNF166
KCTD7
EFEMP2
LNPEP
RAC1
CDS2
INSM2
EIF4H
HOXB1
CSRNP1
MBD2
CMSS1
USP42
INAFM2
ARID4A
ANKRD1
DUSP9
ILF2
LFNG
PNKD
LIMA1
ARL8A
IFI16
TXNDC11
ZNF414
PLAGL1
TDRKH
TUBB4B
TXNRD1
HTR5A
AIFM2
EVPL
SEC14L1
SYTL3
HIBADH
CERK
IKBKB
WTAP
LMNA
ZNF76
LUC7L2
LRP5L
PRKACA
UBE2F
LAMP1
SORBS2
NRSN2
NR2C1
MSX2
KLHDC2
MT2A
IL6R
NRM
SLC35A3
BHLHE40
COMTD1
CXCR4
TCTEX1D4
BTBD19
IQGAP2
CFL1
C12orf73
TIGD1
EIF4E2
CPSF4L
TUBGCP3
CDK6
RBM15
SH2D6
UACA
ZNF77
CCDC88A
RNF34
USPL1
CCDC88B
RNF149
NEDD9
CR1L
RNPEPL1
NRXN1
EPM2A
SH3BP2
IRF9
PIKFYVE
PIGV
ZNF3
H6PD
ING1
GOT1
TBL1X
PAX6
TMEM60
PHTF2
RASSF2
ZDHHC4
MYADM
EIF1B
CCL16
KRI1
CDKN2D
E4F1
ANKS4B
CBX4
NANP
USP3
KCNH7
CYB5R4
TF
METRN
DCAF7
NKIRAS1
KLF6
TRAF4
WDR97
MAF1
SCAP
NCOA7
ZNF595
ORMDL3
CRKL
SEMA5B
OPRM1
POLR3E
GFOD1
PKM
TUBB
INHBE
NKX1-1
GPAA1
EXOSC4
YTHDF2
ZNF827
MARCHF3
CXXC5
STX16
ATP2B2
RNF144A
CLK1
PC
ICAM1
ATG16L1
ERI3
SMIM11B
SMIM11A
CEBPE
TRIM7
CDC42EP3
RXRA
TSPAN4
POLR2L
NFE2L1
NCBP2AS2
NCBP2
ENO1
SRSF2
SLC25A19
MFSD11
KPNA4
UGT1A1
FAAP24
CEP89
IRS1
GSN
PCTP
PARK7
HECTD4
UNC13D
ATP5MC1
TRAF2
PLEKHF2
TACC1
TCHP
L1CAM
ANP32E
CELSR3
MPND
PXMP4
MPC1
TTC30B
GPT2
GGT1
CCDC114
HSP90B1
C14orf93
ZC2HC1C
SULF1
ETV4
PAQR8
DUSP12
UBE2C
SRCAP
LOC730183
GPATCH8
DGKZ
RHBG
DDX1
ETFBKMT
CALM2
GBA
BRWD1
RTBDN
LMO4
FAM24A
HNRNPC
TMC6
TANK
GPR35
RAB17
LASP1
FLAD1
ZCWPW1
TMTC4
SLC25A6
MEPCE
ALDH4A1
ATP23
MPV17L2
IL6ST