ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584302 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◣ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
RABL2B
SP5
RABL2A
POLR3F
DZANK1
ZNF503
MAPKAPK5
LEFTY2
CACTIN
NUP85
NME6
PSMG2
CEP76
HSPA9
IPO13
NVL
PSMD1
POLR2E
TAOK3
SUDS3
RWDD1
PHOX2B
NEUROG2
VDAC2
C19orf48
DYNC1LI2
SLC35B1
NDUFA4
EXOSC5
BCKDHA
ZNF576
IRGQ
TSN
FARSB
DCTN1
TBCK
AIMP1
GOSR2
VTI1B
UPF2
FAM187A
EFTUD2
CCDC103
RPL21
NUP205
PMAIP1
ANAPC7
REXO1
ATP5MG
NCLN
ACTR10
BLCAP
CAPRIN1
STAM
MRPS7
GGA3
SEC61B
ALG2
PNO1
HADHB
HADHA
SKP1
STAM2
MSX1
IQCG
RPL35A
DPH6
PI4KB
GRSF1
PES1
TMED1
COX7A2L
CNTN1
SRD5A1
SMC6
GEN1
PAK1IP1
C6orf52
GOLGA5
ZP4
BABAM2
RBKS
TSNAX
LYRM4
FARS2
TTC8
RBBP5
FRG2C
UBE2I
MRPS5
SART3
ISCU
PSMD12
ICE1
UFM1
TCF7L2
PCBP1
PDAP1
BUD31
PAF1
RPS12
RPS23
ATP6AP1L
SF3B3
COG4
USP1
RPS27A
CLHC1
SMC2
PROSER1
NHLRC3
FAM104A
C17orf80
ZRANB2
SELENOF
HS2ST1
SUPV3L1
VARS1
DUX4
RABGGTB
TM9SF1
EIF4ENIF1
ARHGAP10
PRRX1
PRSS56
GRIP1
HES3
ADK
AP3M1
APOM
BAG6
PIN4
NEUROG3
PTGES2
FRG2
OSGEP
APEX1
SPECC1
BICRA
XPNPEP3
ST13
NFKBIL1
DDX39B
ATP6V1G2
STK36
RNF25
HES7
OR2L13
OR2AJ1
PAX6
SIX1
COMMD1
CCT4
RPS29
LRR1
CCDC33
MESP1
OR6B2
NDUFA10
PDE6B
MSGN1
LZTS1
OAZ3
MRPL9
SUCLG1
NEUROG1
ATOH1
PDZD2
ID2
ADGRL2
H3C12
H2BC17
H2AC17
GADD45GIP1
DEFB106B
DEFB106A
OTX1
TLE3
ABLIM3
CDX1
ARHGAP11A-SCG5
ARHGAP11A
TAF9
RAD17
AK6
GADD45G
ZGPAT
ARFRP1
EOLA2
CERS6
CR1L
ZSWIM6
MUC12
RPL7
RDH10
ZNF383
SLAMF8
SEC11C
SLC39A8
ID3
STK38
CNPY2
HOXA3
KRT20
KCNJ5
IGFBP2
SRCIN1
RXRB
SLC39A7
HSD17B8
PBX3
TMPPE
GLB1
LYPD6B
RPN1
NEBL
EIF2S3
SHMT2
CDC73
HOXA4
SP8
EBP
MRTO4
EMC1
ALDH1A2
CCDC200
PDHX
APIP
HOXB3
CLGN
HOXB4
ANKLE2
KLF17
SMPD1
KLHL25
CPSF4L
CDC42EP2
APBA1
COQ3
CDON
SCN2A
SKIL
TBX3
MSX2
GPR78
VENTX
HOXD3
CACNA1D
BNIP2
GAD2
NKD1
DKK1
GTF3C4
DDX31
USP17L20
USP17L22
PDPN
ST18
HOXA2
SNCG
MMRN2
GORAB
USP17L21
USP17L12
USP17L11
USP17L18
KDM2B
GIMAP5
CBX4
TLE2
NKX2-2
IPO8
PDE12
EYA1
MEIS3
LRATD2
PTGES3
METTL11B
ZNF746
USP17L19
PAX2
NFE2
USP17L15
FGFR2
CSTF2T
SOST
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
ASIP
ALKBH5
FTL
SP7
GATA3
LRGUK
MEIS2
DMBX1
SYBU
RPS24
POLR3A
PAX8
ATP1A4
ITGB5
TPRA1
CCN1
PRUNE2
HERPUD1
MPP4
NR6A1
WASHC3
CTXN3
SPCS1
GLT8D1
UQCC2
TMEM123
CLDN9
FAM3C
TTYH1
REC8
CWC22
CPN2
DPEP1
HES1
CHN2
CPVL
CCDC85A
TMEM107
ECM2
AGO1
UNC5C
PRICKLE1
DSCAML1
MYRIP
LZTFL1
FGF2
PCBD2
KCNN2
PPM1B
EML4
HAO1
LEF1
SH2D3C
TMEM120B
RBFOX2
ABCA5
VOPP1
MSI2
DLL4
EIF2S1
ATP6V1D
MVB12A
CDK15
THEG
MTRNR2L1
RARB
MTRNR2L2
MSH3
DHFR
MTRNR2L8
CDX2
IGFBP6
SOAT2
SPATC1L
CYP26A1
VEZT
FGD6
ARID3B
FZD8
RARA
IER3
FLOT1
SP2
C16orf91
NDUFS7
DHRS3
SH2B1
NEUROD1
KAT6B
DPP9
SPATA25
BNIP3
ERCC1
BBS9
LBX1
TPM1
TRIP10
GPR108
NEURL2
CTSA
TLE4
DNAJB7
MRPL38
H2AW
TTI2
WDR74
HOXA1
LIN28A
ASB2
INSM1
DUSP6
PCGF1
LBX2
CDCA7L
METTL24
TEPSIN
NDUFAF8
ERRFI1
DNM2
FGF19
FOXP1
COL23A1
P4HB
RUNX1T1
TBX2
FBXO31
NPAS4
MLEC
MINDY2
HPD
TNFRSF19
CS
ANKRD28
RPS10-NUDT3
RPS10
TMEM70
ELOC
PDE4D
PDHB
SYNPO
AXDND1
HUS1
SMAD3
CCNDBP1
MRPL34
DAPL1
LPIN1
ARHGEF28
CAMTA1
RAB5B
KANSL3
FER1L5
KIF21B
STX18
DCTN3
DLX4
TLE1
XKR7
ZFHX3
PHC2
DONSON
DOLPP1
ARID3C
ARRDC4
ANK2
HOXC4
PGK1
HSPA1B
CBFA2T2
ATF6
RBPJ
OTUD7B
SIRT4
NELFA
MFSD10
UPF3A
KDM6B
KATNB1
PANK2
SMPDL3A
SQSTM1
TMEM101
TRIB1
CCDC174
BAIAP2
PDZRN3
FRA10AC1
PPP6R3
ABHD2
ABCC10
RARG
NINJ2
ZNF687
SMARCD2
BCL3
POP5
RFX1
CLCN3
MYLK4
NR2F1
MTMR4
QPRT
GATA4
GPCPD1
ID1
ZFHX4
NRL
SRSF11
ZNF367
PCGF2
NBPF1
KCNAB2
TOP2A
CCNL2
PSPN
ALKBH7
CNOT2
ANKHD1-EIF4EBP3
ANKHD1
MRPS31
SMG6
LRRC40
NUBP1
SACM1L
ADAP1
DYNLT1
ITGAV
FOXP2
FURIN
NFKBIA
ARSG
MIDEAS
IQSEC3
POLDIP3
NR2F6
RNF103-CHMP3
RMND5A
DCAF11
HEXIM2
RASSF5
PXYLP1
SP1
PKDCC
PCNA
ZFAND2A
ZNF608
OSBP
NLK
PPCDC
ABHD8
STIP1
EIF2AK3
KAZALD1
RNF207
DLG2
CSF3R
RHBDD1
HMGCS1
SOD2
AHDC1
MDM2
ATP5F1B
SLC45A4
HNRNPA2B1
CBX3
PSMD6
RAB11B
KNL1
RBBP7
G3BP1
LPCAT3
KMT5A
NCOA2
EVI5L
CITED2
KDM8
RTN4
TRAF7
MACROH2A1
JUP
PRDM10
DDA1
HNRNPD
MALRD1
GPC6
SREBF1
POLG
FAM107B
SMIM20
SLC7A5
DLC1
CRLS1
SOCS3
B4GAT1
TRIM46
LIG3
EVA1A
MTF2
SHF
MBD6
DDIT3
MIDN
RGS12
PLEKHG2
SPG7
ARHGAP24
TPCN1
SEPTIN9
CCL26
GLRX5
ANTKMT
PKN2
SSBP4
FST
DAGLB
SLC6A12
LCK
FAM167B
GADD45A
CBX5
TMEM94
BAHCC1
SEC22B
CCDC43
RGS3
ARAP1
KDM3A
INAVA
ZFP36
BFSP1
NCDN
KIAA0319L
PRMT5
NEK3
EIF3D
ATP6V1E2
TLN1
SLC30A4
CREB3
STAP2
ACYP1
MYEOV
HPCAL1
SH3YL1
ACP1
ABCA4
DIABLO
FGR
ADM
ZBTB18
MRPS28
PLEC
CYP51A1
RAB37
COX5A
STX1A
SERPINB1
SERPINE1
HOXC6
LRCH4
FBXO24
RHOQ
GMEB2
ARID2
HMGB1
ANKMY1
CEP41
CIC
FRMD3
ARHGAP4
HNMT
ARID5A
CAPNS2
UGP2
CNKSR3
KMT2A
CPT1A
ROGDI
DNAJB3
LTBR
KIAA0319
BRMS1
MRPS24
TRDMT1
SYNJ2
LAPTM5
ARHGEF10L
HOXC5
TES
PHETA1
RNF166
KCTD7
EFEMP2
LNPEP
RAC1
CDS2
INSM2
EIF4H
HOXB1
CSRNP1
MBD2
CMSS1
USP42
INAFM2
ARID4A
ANKRD1
DUSP9
ILF2
LFNG
PNKD
LIMA1
ARL8A
IFI16
TXNDC11
ZNF414
PLAGL1
TDRKH
TUBB4B
TXNRD1
HTR5A
AIFM2
EVPL
SEC14L1
SYTL3
HIBADH
CERK
IKBKB
WTAP
LMNA
ZNF76
LUC7L2
LRP5L
GTF3A
PRKACA
UBE2F
LAMP1
SORBS2
NRSN2
NR2C1
KLHDC2
MT2A
IL6R
NRM
SLC35A3
BHLHE40
RAI14
COMTD1
CXCR4
TCTEX1D4
BTBD19
IQGAP2
CFL1
C12orf73
TIGD1
EIF4E2
TUBGCP3
CDK6
RBM15
SH2D6
UACA
ZNF77
CCDC88A
RNF34
USPL1
CCDC88B
RNF149
NRCAM
NEDD9
GSTP1
RNPEPL1
NRXN1
TRABD2B
LRIG1
EPM2A
SH3BP2
IRF9
PIKFYVE
PIGV
ZNF3
H6PD
ING1
GOT1
TBL1X
TMEM60
PHTF2
RASSF2
ZDHHC4
MYADM
EIF1B
CCL16
KRI1
CDKN2D
E4F1
ANKS4B
NANP
USP3
KCNH7
CYB5R4
PRDM12
TF
METRN
DCAF7
NKIRAS1
CHD8
KLF6
TRAF4
WDR97
MAF1
SCAP
NCOA7
ZNF595
ORMDL3
CRKL
SEMA5B
OPRM1
POLR3E
GFOD1
PKM
TUBB
INHBE
NKX1-1
GPAA1
EXOSC4
YTHDF2
ZNF827
MARCHF3
CXXC5
STX16
ATP2B2
RNF144A
CASC3
CLK1
PC
ICAM1
ATG16L1
ERI3
SMIM11B
SMIM11A
CEBPE
TRIM7
CDC42EP3
RXRA
TSPAN4
POLR2L
NFE2L1
NCBP2AS2
NCBP2
ENO1
SRSF2
SLC25A19
MFSD11
KPNA4
UGT1A1
FAAP24
CEP89
IRS1
GSN
PCTP
PARK7
HECTD4
UNC13D
ATP5MC1
TRAF2
PLEKHF2
TACC1
TCHP
L1CAM
ANP32E
CELSR3
MPND
ACVR1
PXMP4
MPC1
TTC30B
GPT2
GGT1
NEO1
CCDC114
SH3BP4
HSP90B1
C14orf93
ZC2HC1C
SULF1
ETV4
PAQR8
DUSP12
UBE2C
SRCAP
LOC730183
GPATCH8
DGKZ
RHBG
DDX1
ETFBKMT
CALM2
GBA
BRWD1
RTBDN
DBX1
LMO4
FAM24A
HNRNPC
TMC6
TANK
GPR35
RAB17
LASP1
FLAD1
ZCWPW1
TMTC4
SLC25A6
MEPCE
ALDH4A1
ATP23
MPV17L2
IL6ST
CBFA2T3
MAP1LC3B
UBXN10
SDSL
SCYL1
POLR2J3
TCF4
ARNTL
LYL1
SHB
CCDC59
KMT2E
STARD4
H4C12
MVD
FILIP1L
TBC1D8
HSPE1-MOB4
HSPE1
HSPD1
CYCS
SNX1
CIAO2A
DEAF1
ZNF148
PRAM1
CCDC38
AMDHD1
ZCCHC3
SNX3
MTRF1L
SLC25A25
PRR14
YARS1
S100PBP
PACSIN2
TMC8
LRRC59
CCDC107
DNAJB1
ATP5MPL
FAM72A
ELOVL6
RFX8
HNRNPUL1
ERBB2
TOMM40
AK2
RMDN3
CAT
SERPINB9
ZNF740
SHC1
CSAD
CKS1B
TCERG1
TMEM59L
CRLF1
PITPNM1
ARIH2
MAPKAPK3
KPNB1
FMC1-LUC7L2
FMC1
PEX14
DFFA
GRWD1
PLEKHO2
LRRN4
TMC7
PGP
LDLR
BRICD5
MLLT6
CMTR1
C8orf37
TMEM14A
DCP1A
STAT3
KHSRP
NAT8
BCAR3
WBP1L
BAZ1B
FAM227B
DTWD1
DNAJB8
ABCB1
INPP5D