ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584303 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◣ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
RABL2B
RABL2A
PSMD1
NME6
MAPKAPK5
RWDD1
IPO13
POLR3F
DZANK1
CACTIN
ZP4
TAOK3
SUDS3
PSMG2
CEP76
FAM187A
EFTUD2
CCDC103
NUP85
VDAC2
GRSF1
NVL
HSPA9
DYNC1LI2
ZNF503
SP5
RPL21
C19orf48
POLR2E
PMAIP1
STAM2
STAM
GOSR2
TBCK
AIMP1
TSN
ATP5MG
VTI1B
REXO1
NUP205
LEFTY2
MRPS7
GGA3
EXOSC5
BCKDHA
NDUFA4
DCTN1
CAPRIN1
SEC61B
ALG2
BLCAP
ZNF576
IRGQ
UPF2
PES1
PNO1
SKP1
NEUROG2
NCLN
PAK1IP1
C6orf52
FARSB
RBBP5
SLC35B1
TSNAX
ACTR10
DPH6
ARHGAP10
SELENOF
HS2ST1
GOLGA5
SRD5A1
HADHB
HADHA
UBE2I
TMED1
LYRM4
FARS2
RPS12
PROSER1
NHLRC3
PCBP1
VARS1
BABAM2
RBKS
TTC8
PHOX2B
PSMD12
ICE1
RPS23
ATP6AP1L
SPECC1
MRPS5
ANAPC7
USP1
SMC2
COX7A2L
EIF4ENIF1
ZRANB2
PI4KB
SART3
ISCU
FAM104A
C17orf80
HES3
IQCG
RPL35A
SUPV3L1
RABGGTB
PDAP1
BUD31
ADK
AP3M1
UFM1
PAF1
CNTN1
APOM
BAG6
TM9SF1
PRSS56
SF3B3
COG4
PAX6
XPNPEP3
ST13
NKD1
PTGES2
PRRX1
OSGEP
APEX1
COMMD1
CCT4
PDZD2
PIN4
NFKBIL1
DDX39B
ATP6V1G2
RPS27A
CLHC1
STK36
RNF25
LZTS1
NEUROG1
GRIP1
NEUROG3
RPS29
LRR1
TCF7L2
BICRA
MSX1
EOLA2
SUCLG1
OR6B2
NDUFA10
MUC12
IGFBP2
OR2L13
OR2AJ1
FRG2C
EIF2S3
SMC6
GEN1
ANKLE2
KLF17
TAF9
RAD17
AK6
RXRB
SLC39A7
HSD17B8
SLAMF8
PDE6B
OAZ3
MRPL9
ZSWIM6
OTX1
SEC11C
PDHX
APIP
ARHGAP11A-SCG5
ARHGAP11A
HOXA4
CDX2
KLHL25
GADD45GIP1
RPL7
RDH10
CPSF4L
GPR78
ATOH1
CDC73
GADD45G
CR1L
MRTO4
EMC1
PDPN
PCBD2
BNIP3
GTF3C4
DDX31
MSX2
GORAB
HOXB3
HOXB4
CDX1
HAO1
DUX4
HES1
CNPY2
RPN1
METTL11B
WBP1L
TMPPE
GLB1
ST18
RBBP7
PNKD
KDM2B
CSRNP1
ZNF383
DMBX1
FZD8
TRABD2B
SMPD1
AXDND1
STK38
SKIL
ALKBH5
SRCIN1
TLE3
PRUNE2
TSHZ1
ZADH2
FGF2
CCDC33
MALRD1
ZGPAT
ARFRP1
CACNA1D
SP7
LZTFL1
TTYH1
GAD2
CDH12
ALDH1A2
PALM2AKAP2
SNCG
MMRN2
CTXN3
MMP3
SP8
LRATD2
HOXA3
HES7
EBP
FRG2
MESP1
MRPL38
FGFR2
MYRIP
PDHB
LIG3
SULF1
HSPA1B
HOXD3
ONECUT2
CLGN
UROD
HECTD3
ADGRL2
SRSF11
LRRC40
NKX2-2
ABLIM3
SYBU
MYBPH
NEBL
NR6A1
GIMAP5
MEIS2
PBX3
YWHAB
LY6G6D
C1QL3
TKT
PAX4
CHN2
CPVL
CDC42EP2
RNF32
VEZT
FGD6
SPCS1
GLT8D1
PDE12
DLL4
TTLL6
LRRC8C
FMOD
FAM3C
EIF4H
SLITRK5
PCBP4
CLDN9
SOST
NUP210
APBA1
TBX3
FAM72C
SRGAP2B
FAM72D
FOXD1
HOXB8
GUK1
C11orf95
TBC1D8
SNX1
CIAO2A
MEIS3
ZDHHC1
FBXW11
B4GALT5
DGKZ
SUSD6
HERPUD1
TLE2
LYPD6B
FAM107B
TMEM123
MYLK4
IPO8
RASL10B
RABL3
GTF2E1
DKK1
NELFA
ITPRIP
TMEM131L
KDM8
HHIP
CCDC200
H3C12
H2BC17
H2AC17
ARSI
HOXD1
CCN1
SH3D19
PTGES3
CNTN4
ULBP3
MYORG
C9orf24
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
BNIP2
RPS24
POLR3A
TK1
COQ3
HOXA9
HOXA7
CS
GCNT2
HAS2
EML4
CMTR1
TRAP1
ENO1
LINGO1
YAP1
PAX2
OR52E2
HOXC4
RPH3A
UQCC2
EYA1
LIN28B
ZNF471
AGO1
GATA3
PKNOX2
CCDC43
CFAP410
KLF6
HOXB7
RPS10-NUDT3
RPS10
TCHP
PPM1B
MAB21L2
EXOC6B
PAPPA
INSM1
CCDC85A
DAPL1
PANK2
RARA
TPRA1
ARHGAP24
CUEDC1
KCNJ5
TPM1
RNF138
LIMCH1
CHD8
TPCN2
SEPHS1
NEUROD1
AXIN2
RGSL1
TMEM70
ELOC
ZNF746
TMEM120B
PROX1
EPHA5
HOXB1
JCAD
KIAA1522
MAPK8
ITIH4
MUSTN1
NABP1
CCDC169-SOHLH2
CCDC169
ADAMTS15
GYPC
QPRT
DSCAML1
HEBP1
HOXA1
FGF19
CDK5R1
USP17L20
USP17L22
SERTAD3
ABCB5
ZFHX3
FBXO46
MEIOSIN
RSPO4
FAM162A
CCDC58
PCDH18
LRGUK
VAMP5
VAMP8
WASHC3
MPZL2
LIN28A
SLC7A5
USP17L15
MTCH2
CYP26A1
KRTAP3-1
NPEPL1
CBX4
ZNF341
CRYM
KCNN2
DTNB
EIF2S1
ATP6V1D
SPDYA
CCDC114
EMP3
THEG
ID2
PLAGL1
SHMT2
ASIP
NFE2
SREBF1
CLDN2
SYT7
SH2B1
COL11A2
EVPL
MCC
BBS9
ID3
FOXP2
CYP51A1
BRINP1
RUNX1T1
KDM3A
ADM
LRRC10B
DST
CLDN3
TESC
SOX12
TOMM34
CERS6
STK4
LRAT
OAS1
NRARP
LSM14B
TRDMT1
NUTM2D
DCTN3
ARID3C
MSI2
IRS2
GABRR1
ZGRF1
LARP7
KAT6B
SALL4
CCNI
ACSM6
OCLN
CD99L2
ZMAT4
MRPL34
ABHD8
DDA1
LIMS1
ABCA5
PAX3
KDM6B
NEDD9
PACSIN2
ELF1
WBP4
ANO4
TBC1D10A
TMEM114
KMT2A
MPP4
TMEM107
ANK2
REC8
SALL1
CD36
KIRREL2
RARB
MBNL3
XIAP
VENTX
SLC10A2
HHIPL2
MAP1A
METTL24
PKD1
PEPD
PAX8
ARID5B
CYREN
SRGAP2C
FAM72B
CENPBD1
DHX32
TCF20
GAS2L1
ERCC1
RASL11B
STARD4
RCOR3
CEMP1
PDPK1
CATSPERG
BAZ2B
TBL1XR1
CDK15
GBX2
SSH1
MXD3
FTL
TLE4
PPFIBP2
SIPA1
RXYLT1
ASS1
PTGR1
SOCS3
CD9
LPIN1
OR8J1
RPRM
PRICKLE1
CSTF2T
MRGPRE
CSNK2A2
TLE1
PHC2
KRT20
C3orf52
BTRC
NPAS4
ZFHX4
SERPING1
CER1
RBM20
TARS1
H4C6
PAH
ASCL1
MSGN1
ERRFI1
HRK
HOXC6
HOXC5
ZCWPW1
MEPCE
TFDP2
STX3
HOXA6
CBX5
BRWD1
PLEKHA5
RNF38
ECM2
ZNF76
AHDC1
DEFB106B
DEFB106A
DLL3
PRDX6
PRTG
SLC39A8
ZNF474
SPATA25
NEURL2
CTSA
SPRY4
GXYLT2
MVB12A
TAGLN3
EPHA1
RBFOX2
DDX46
DMAP1
MGST1
NFIX
CEP97
ADAMTS19
WNT5B
CTBP2
STRADA
RCN1
NAV1
ERLIN2
DUSP12
PEX14
DFFA
PLEKHA6
SPIN1
CCNDBP1
TLN1
CREB3
REST
ACOX2
RFFL
BAK1
GNAI2
KRTAP4-12
GLI1
KLHL15
IFI16
OTUD7B
CASC3
BCAT2
DUSP4
KSR1
NDUFS7
LHX2
SOX6
ZBTB45
GCK
TPST2
GPX3
PIM1
ATXN7
STRA6
DRAP1
C11orf68
ARHGEF38
TRIP12
FBXO36
PCF11
ABHD2
MTRNR2L1
MTRNR2L2
MSH3
DHFR
MTRNR2L8
IGFBP6
SOAT2
SPATC1L
ARID3B
IER3
FLOT1
SP2
C16orf91
DHRS3
DPP9
LBX1
TRIP10
GPR108
DNAJB7
H2AW
TTI2
WDR74
HOXA2
ASB2
DUSP6
PCGF1
LBX2
CDCA7L
TEPSIN
NDUFAF8
DNM2
FOXP1
COL23A1
P4HB
TBX2
FBXO31
MLEC
MINDY2
HPD
TNFRSF19
ANKRD28
PDE4D
SYNPO
HUS1
SMAD3
ARHGEF28
CAMTA1
RAB5B
KANSL3
FER1L5
KIF21B
STX18
DLX4
XKR7
DONSON
DOLPP1
ARRDC4
PGK1
CBFA2T2
ATF6
RBPJ
SIRT4
MFSD10
UPF3A
KATNB1
SMPDL3A
SQSTM1
TMEM101
TRIB1
CCDC174
BAIAP2
PDZRN3
FRA10AC1
PPP6R3
ABCC10
RARG
NINJ2
ZNF687
SMARCD2
BCL3
POP5
RFX1
CLCN3
NR2F1
MTMR4
GATA4
GPCPD1
ID1
NRL
ZNF367
PCGF2
NBPF1
KCNAB2
TOP2A
CCNL2
PSPN
ALKBH7
CNOT2
ANKHD1-EIF4EBP3
ANKHD1
MRPS31
SMG6
NUBP1
SACM1L
ADAP1
DYNLT1
ITGAV
FURIN
NFKBIA
ARSG
MIDEAS
IQSEC3
POLDIP3
NR2F6
RNF103-CHMP3
RMND5A
DCAF11
HEXIM2
RASSF5
PXYLP1
SP1
PKDCC
PCNA
ZFAND2A
ZNF608
OSBP
NLK
PPCDC
STIP1
EIF2AK3
KAZALD1
RNF207
DLG2
CSF3R
RHBDD1
HMGCS1
SOD2
MDM2
ATP5F1B
SLC45A4
HNRNPA2B1
CBX3
PSMD6
RAB11B
KNL1
G3BP1
LPCAT3
KMT5A
NCOA2
EVI5L
CITED2
RTN4
TRAF7
MACROH2A1
JUP
PRDM10
HNRNPD
GPC6
POLG
SMIM20
DLC1
CRLS1
B4GAT1
TRIM46
EVA1A
MTF2
SHF
MBD6
DDIT3
MIDN
RGS12
PLEKHG2
SPG7
TPCN1
SEPTIN9
CCL26
GLRX5
ANTKMT
PKN2
SSBP4
FST
DAGLB
SLC6A12
LCK
FAM167B
GADD45A
TMEM94
BAHCC1
SEC22B
RGS3
ARAP1
INAVA
ZFP36
BFSP1
NCDN
KIAA0319L
PRMT5
NEK3
EIF3D
ATP6V1E2
SLC30A4
STAP2
ACYP1
MYEOV
HPCAL1
SH3YL1
ACP1
ABCA4
DIABLO
FGR
ZBTB18
MRPS28
PLEC
RAB37
COX5A
STX1A
SERPINB1
SERPINE1
LRCH4
FBXO24
RHOQ
GMEB2
ARID2
HMGB1
ANKMY1
CEP41
CIC
FRMD3
ARHGAP4
HNMT
ARID5A
CAPNS2
UGP2
CNKSR3
CPT1A
ROGDI
DNAJB3
LTBR
KIAA0319
BRMS1
MRPS24
SYNJ2
LAPTM5
ARHGEF10L
TES
PHETA1
RNF166
KCTD7
EFEMP2
LNPEP
RAC1
CDS2
INSM2
MBD2
CMSS1
USP42
INAFM2
ARID4A
ANKRD1
DUSP9
ILF2
LFNG
LIMA1
ARL8A
TXNDC11
ZNF414
TDRKH
TUBB4B
TXNRD1
HTR5A
AIFM2
SEC14L1
SYTL3
HIBADH
CERK
IKBKB
WTAP
LMNA
LUC7L2
LRP5L
GTF3A
PRKACA
UBE2F
LAMP1
SORBS2
NRSN2
NR2C1
KLHDC2
MT2A
IL6R
NRM
SLC35A3
BHLHE40
RAI14
COMTD1
CXCR4
TCTEX1D4
BTBD19
IQGAP2
CFL1
C12orf73
TIGD1
EIF4E2
TUBGCP3
CDK6
VOPP1
RBM15
SH2D6
UACA