ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584313 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◣ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

PSMD1
IPO13
RABL2A
RWDD1
RABL2B
VDAC2
CACTIN
ZNF335
MAPKAPK5
TAOK3
SUDS3
NME6
POLR3F
DZANK1
DYNC1LI2
HSPA9
NUP205
NUP85
VTI1B
EXOSC5
BCKDHA
RPL21
C19orf48
POLR2E
FAM187A
EFTUD2
CCDC103
NCLN
TBCK
AIMP1
PSMG2
CEP76
NVL
STAM2
ZRANB2
GOSR2
SRD5A1
FARSB
MRPS7
GGA3
BLCAP
LYRM4
FARS2
PES1
CAPRIN1
ATP5MG
DCTN1
TSNAX
REXO1
STAM
FRG2C
SEC61B
ALG2
ACTR10
SKP1
UPF2
SUPV3L1
PNO1
RPS23
ATP6AP1L
GOLGA5
RABGGTB
DPH6
HADHB
HADHA
IQCG
RPL35A
TTC8
UFM1
RBBP5
ZNF576
IRGQ
PSMD12
PI4KB
VARS1
SLC35B1
ICE1
USP1
NDUFA4
ADK
AP3M1
PAK1IP1
C6orf52
SMC2
EIF4ENIF1
ANAPC7
COX7A2L
HOXA4
ZNF503
TSN
SART3
ISCU
MRPS5
TMED1
PDAP1
BUD31
RPS27A
CLHC1
SELENOF
HS2ST1
PROSER1
NHLRC3
PCBP1
FRG2
OSGEP
APEX1
APOM
BAG6
SF3B3
COG4
FAM104A
C17orf80
UBE2I
RPS12
TLE1
DUX4
NFKBIL1
DDX39B
ATP6V1G2
XPNPEP3
ST13
BABAM2
RBKS
PAF1
RPS29
LRR1
RND3
ANKLE2
TM9SF1
BICRA
COMMD1
CCT4
EIF2S3
NEUROD1
ABCG2
PIN4
KITLG
POU2F2
ARHGAP11A-SCG5
ARHGAP11A
OR6B2
NDUFA10
LRATD2
MSX1
RPL7
RDH10
SUCLG1
PTGES2
HOXA2
HOXA1
NCOR2
TAF9
RAD17
AK6
TMEM120B
SEC11C
GTF3C4
DDX31
FGD3
GADD45GIP1
NRARP
FZD8
HES3
KCNK16
GUCY2C
PDE1B
TLE4
OAZ3
MRPL9
NEUROG1
MRTO4
EMC1
C1orf105
USP17L20
USP17L22
HES1
WEE2
THTPA
CCDC200
CDC73
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
STK36
RNF25
MYRF
SPRR1A
TMEM70
ELOC
HOXA3
SKIL
FOXP2
SH3BP5
HOXB3
CCN1
HOXB4
MEF2C
C10orf90
CNPY2
GSX2
PAM
CHD7
QPRT
NEUROG2
NR2F1
LRIG3
FGF19
RPN1
AGMO
SPTBN1
PHC2
ARHGAP24
VAV3
HDAC9
VIM
ANK2
DHRS3
SLA
SEMA4D
ZNF383
SPCS1
GLT8D1
PRDM13
MYLK4
NPAS4
TRIL
PDE6B
MRPL38
HMX2
GORAB
TRABD2B
ATOH8
DAPL1
ID1
MSX2
CD69
AXDND1
USP17L21
USP17L12
USP17L11
USP17L18
TLE3
VEZT
FGD6
BNIP3
PRM2
TNP2
PRM3
ZFHX4
TPO
SH3RF2
SMPDL3A
USP17L15
SEC22B
RAI14
GNG12
KCNK10
CTXN3
PDHX
APIP
GAS2L3
ANTKMT
HOXC5
METRN
GPSM1
WDPCP
PCBD2
FMN1
CS
SDK2
INSC
SLC26A2
PCDH1
REC8
MRGPRX3
ZNF608
SLAMF8
TRMT9B
DLG2
GALNT14
NELFA
CEBPD
RPH3A
BCHE
ID2
CEP41
ZGPAT
ARFRP1
FMN2
GFRA1
MTRNR2L1
NEUROG3
RARB
MTRNR2L2
MSH3
DHFR
MTRNR2L8
PDE12
CDX2
IGFBP6
SOAT2
SPATC1L
CYP26A1
ARID3B
NFE2
SYBU
RARA
PMAIP1
IER3
FLOT1
SP2
TMEM107
ARHGAP10
C16orf91
NDUFS7
ZP4
SH2B1
ATOH1
KAT6B
DPP9
SPATA25
ERCC1
LEFTY2
BBS9
IGFBP2
LBX1
TPM1
TRIP10
GPR108
NEURL2
CTSA
DNAJB7
H2AW
PHOX2B
TTI2
WDR74
ST18
TBX3
LIN28A
ASB2
ZNF746
INSM1
DUSP6
PCGF1
LBX2
CCDC33
CDCA7L
METTL24
TEPSIN
NDUFAF8
ERRFI1
DNM2
TPRA1
FOXP1
COL23A1
ALKBH5
P4HB
RUNX1T1
TBX2
FBXO31
MLEC
MINDY2
HPD
PRUNE2
TNFRSF19
ANKRD28
DLL4
RPS10-NUDT3
RPS10
SP5
PDE4D
PDHB
SYNPO
HUS1
SMAD3
CCNDBP1
MRPL34
CLGN
LPIN1
ARHGEF28
CAMTA1
RAB5B
ID3
KANSL3
FER1L5
KIF21B
STX18
DCTN3
DLX4
XKR7
ZFHX3
RXRB
DONSON
DOLPP1
ARID3C
ARRDC4
RPS24
POLR3A
HOXC4
PGK1
SLC39A7
HSPA1B
CBFA2T2
ATF6
RBPJ
OTUD7B
SIRT4
MFSD10
UPF3A
PRRX1
KDM6B
KATNB1
PANK2
SQSTM1
LZTS1
TMEM101
TRIB1
CCDC174
BAIAP2
PDZRN3
FRA10AC1
PPP6R3
ABHD2
ABCC10
RARG
NINJ2
ZNF687
SMARCD2
BCL3
POP5
RFX1
CLCN3
MTMR4
GATA4
GPCPD1
NRL
SRSF11
ZNF367
PCGF2
NBPF1
KCNAB2
TOP2A
KDM2B
CCNL2
PSPN
ALKBH7
CNOT2
ANKHD1-EIF4EBP3
ANKHD1
MRPS31
SMG6
LRRC40
NUBP1
SACM1L
ADAP1
DYNLT1
ITGAV
FURIN
NFKBIA
ARSG
MIDEAS
TLE2
IQSEC3
POLDIP3
NR2F6
RNF103-CHMP3
RMND5A
DCAF11
HEXIM2
CNTN1
RASSF5
PXYLP1
SP1
PKDCC
PCNA
ZFAND2A
OSBP
NLK
PPCDC
ABHD8
STIP1
EIF2AK3
KAZALD1
RNF207
CSF3R
RHBDD1
HMGCS1
SOD2
AHDC1
MDM2
ATP5F1B
GADD45G
SLC45A4
HNRNPA2B1
CBX3
PSMD6
RAB11B
KNL1
RBBP7
AGO1
G3BP1
LPCAT3
KMT5A
NCOA2
EVI5L
CITED2
KDM8
DSCAML1
RTN4
TRAF7
MACROH2A1
FTL
JUP
PRDM10
DDA1
HNRNPD
MALRD1
GPC6
SREBF1
POLG
FAM107B
SMIM20
MEIS2
SLC7A5
DLC1
CRLS1
GRSF1
SOCS3
B4GAT1
TRIM46
LIG3
EVA1A
MYRIP
MTF2
SHF
MBD6
DDIT3
MIDN
METTL11B
RGS12
RBFOX2
PLEKHG2
SPG7
TPCN1
SEPTIN9
CCL26
GLRX5
PKN2
SSBP4
FST
DAGLB
SLC6A12
LCK
FAM167B
GADD45A
CBX5
TMEM94
BAHCC1
CCDC43
RGS3
ARAP1
KDM3A
INAVA
ZFP36
BFSP1
NCDN
KIAA0319L
PRMT5
NEK3
EIF3D
ATP6V1E2
TLN1
SLC30A4
CREB3
STAP2
ACYP1
MYEOV
HPCAL1
SH3YL1
ACP1
H3C12
H2BC17
H2AC17
ABCA4
DIABLO
FGR
ADM
ZBTB18
MRPS28
PLEC
CYP51A1
RAB37
COX5A
STX1A
SERPINB1
SERPINE1
SNCG
MMRN2
HOXC6
LRCH4
FBXO24
RHOQ
CACNA1D
GMEB2
TCF7L2
ARID2
HMGB1
ANKMY1
CIC
FRMD3
ARHGAP4
HNMT
ARID5A
CAPNS2
UGP2
CNKSR3
KMT2A
NKD1
CPT1A
ROGDI
DNAJB3
LTBR
KIAA0319
BRMS1
MRPS24
TRDMT1
SYNJ2
LAPTM5
ARHGEF10L
TES
PHETA1
RNF166
KCTD7
EFEMP2
LNPEP
RAC1
CDS2
INSM2
EIF4H
HOXB1
CSRNP1
MBD2
CMSS1
USP42
INAFM2
ARID4A
ANKRD1
DUSP9
ILF2
LFNG
PNKD
LIMA1
ARL8A
IFI16
TXNDC11
ZNF414
PLAGL1
TDRKH
TUBB4B
TXNRD1
HTR5A
AIFM2
EVPL
SEC14L1
SYTL3
HIBADH
DMBX1
CERK
IKBKB
WTAP
LMNA
ZNF76
LUC7L2
LRP5L
GTF3A
PRKACA
UBE2F
LAMP1
SORBS2
NRSN2
NR2C1
KLHDC2
MT2A
IL6R
NRM
SLC35A3
BHLHE40
COMTD1
CXCR4
TCTEX1D4
BTBD19
IQGAP2
CFL1
C12orf73
TIGD1
EIF4E2
CPSF4L
TUBGCP3
CDK6
VOPP1
RBM15
SH2D6
UACA
ZNF77
CCDC88A
RNF34
USPL1
CCDC88B
RNF149
NRCAM
NEDD9
GSTP1
CR1L
RNPEPL1
NRXN1
LRIG1
EPM2A
SH3BP2
IRF9
PIKFYVE
PIGV
ZNF3
H6PD
ING1
GOT1
TBL1X
PAX6
TMEM60
PHTF2
RASSF2
ZDHHC4
MYADM
EIF1B
CCL16
KRI1
CDKN2D
E4F1
ANKS4B
CBX4
NANP
USP3
KCNH7
CYB5R4
PRDM12
TF
DCAF7
NKIRAS1
CHD8
KLF6
TRAF4
WDR97
MAF1
SCAP
NCOA7
ZNF595
ORMDL3
CRKL
SEMA5B
OPRM1
POLR3E
GFOD1
PKM
TUBB
INHBE
NKX1-1
GPAA1
EXOSC4
YTHDF2
ZNF827
MARCHF3
CXXC5
STX16
ATP2B2
RNF144A
CASC3
CLK1
PC
ICAM1
ATG16L1
ERI3
SMIM11B
SMIM11A
CEBPE
TRIM7
CDC42EP3
RXRA
TSPAN4
POLR2L
NFE2L1
NCBP2AS2
NCBP2
ENO1
SRSF2
SLC25A19
MFSD11
KPNA4
UGT1A1
FAAP24
CEP89
IRS1
GSN
PCTP
PARK7
HECTD4
UNC13D
ATP5MC1
TRAF2
PLEKHF2
TACC1
TCHP
L1CAM
ANP32E
CELSR3
MPND
ACVR1
PXMP4
MPC1
TTC30B
GPT2
GGT1
NEO1
CCDC114
SH3BP4
HSP90B1
C14orf93
ZC2HC1C
SULF1
ETV4
PAQR8
DUSP12
UBE2C
SRCAP
LOC730183
GPATCH8
DGKZ
RHBG
DDX1
ETFBKMT
CALM2
GBA
BRWD1
RTBDN
DBX1
LMO4
FAM24A
HNRNPC
TMC6
TANK
GPR35
RAB17
LASP1
FLAD1
ZCWPW1
TMTC4
SLC25A6
MEPCE
ALDH4A1
ATP23
MPV17L2
IL6ST
CBFA2T3
MAP1LC3B
ABLIM3
UBXN10
SDSL
ADGRL2
SCYL1
POLR2J3
TCF4
ARNTL
LYL1
SHB
CCDC59
KMT2E
STARD4
H4C12
MVD
FILIP1L
TBC1D8
HSPE1-MOB4
HSPE1
HSPD1
CYCS
SNX1
CIAO2A
DEAF1
ZNF148
PRAM1
CCDC38
AMDHD1
ZCCHC3
SNX3
MTRF1L
SLC25A25
PRR14
YARS1
S100PBP
PACSIN2
TMC8
LRRC59
CCDC107
DNAJB1
ATP5MPL
TMPPE
GLB1
FAM72A
ELOVL6
RFX8
HNRNPUL1
ERBB2
TOMM40
AK2
RMDN3
CAT
SERPINB9
ZNF740
SHC1
CSAD
CKS1B
TCERG1
TMEM59L
CRLF1
PITPNM1
ARIH2
MAPKAPK3
KPNB1
FMC1-LUC7L2
FMC1
PEX14
DFFA
GRWD1
PLEKHO2
LRRN4
TMC7
PGP
LDLR
BRICD5
MLLT6
CMTR1
C8orf37
TMEM14A
DCP1A
STAT3
KHSRP
NAT8
BCAR3
WBP1L
BAZ1B
FAM227B
DTWD1
DNAJB8
ABCB1
INPP5D
NRSN1
IGF2BP3
WDR18
FAM228B
KIF26A
FGG
TYRO3
PCM1
TYROBP
GATD3B
GATD3A
NRP1
ARHGEF1
TOP2B
SLC25A51
CCPG1
C15orf65
UPP1
CATSPERG
SKA2
PRR11
SIRT1
GRK5
DTX4
CDX1
PIM1
NBEAL2
MSMO1
LSM2
CPLX2
ATXN1L
SHOX2
RSRC1
MRS2
PLEKHA6
RPS7
PANK4
HES5
URGCP
NBN
JUNB
JAK3