ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9607665 | NTERA-2
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◣ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

H2AW
ZGPAT
ARFRP1
KIF21B
LMOD1
SKIL
MUC20
CYP26A1
LFNG
GJB6
MINDY2
METTL11B
MAP3K6
MDM2
NR2F6
SH2B1
GLI1
CYP1A1
KCNF1
LEFTY2
OTP
LINGO1
MACF1
SOCS3
SERPINB9
N4BP3
CADPS
WFIKKN1
CPLX1
AGO1
PKNOX2
FBXO41
USP3
HECTD4
TMEM59L
CRLF1
JUNB
FOXL2NB
FOXL2
TAGLN2
SPATA25
NEURL2
CTSA
PDE12
SNCG
MMRN2
PCTP
RPS8
HPD
LHX4
ERCC1
BMF
C16orf70
DLX5
KCNQ4
CPE
NODAL
CLDN2
MAPKAPK2
NUP210L
SPACA6
ITGB2
LZTFL1
FAM110D
MAP11
ATP6V0A4
NAPSA
PANK2
EVPL
KLF16
TLX2
BIRC7
PLEKHA6
TPRA1
VWA1
KMT5C
BRI3
CCL26
BTG2
PCDH1
BABAM2
RBKS
CARD14
KCNJ4
FSCN1
HOXB1
SHISA5
ADGRA2
CXCR5
MEGF9
SFXN3
PDZD7
LINGO4
DUSP4
HPDL
HAP1
ANTKMT
METRN
GPR35
MACROH2A2
TLN1
CREB3
TCTEX1D4
BTBD19
LAPTM5
CHCHD10
C22orf15
SUSD3
MIDEAS
CSRNP1
CDX1
SERPINB6
MUC3A
PAX7
PRELID3B
ZNF746
IGFBP5
LDB3
TNC
ARRB1
RD3
UTS2R
MS4A4A
WDR18
MTF2
TRAPPC3
MAP7D1
GATD3B
GATD3A
RNF208
SOAT2
SSTR5
DYSF
FOXK1
RARA
MYRF
ZFHX3
CCDC120
MYEOV
HEY2
MDK
SIM2
SETD1B
PDE6B
HUS1
PRSS47
DIPK1B
AHDC1
FBLN1
LOXL1
SRCAP
LOC730183
APOBEC3G
DPEP3
TPPP3
PSMG3
PRKCZ
NDUFS7
WBP1L
LTA
WDR81
SOX5
HOXC4
CRB2
TRIL
CFAP20DC
TSPAN18
CDC42EP2
APOBEC3D
DHDDS
FGFR1
GUCA2A
DNAH1
LOC105376731
NRSN2
LIF
CDC25B
OTUD7B
TTYH2
SERPING1
IGDCC3
CNPY1
ADM
SHANK2
KDM6B
SOCS2
CASD1
SH3D21
NR2E1
DONSON
NR2C1
TBX6
YPEL3
CCDC33
CNR1
TLE1
NR2C2
ATP6V0C
RUNX1T1
ACYP1
ZC2HC1C
NFE2L1
SH3PXD2A
RCC1
HIGD1A
NFE2
ENO2
LHCGR
PMEPA1
FOXJ3
CRYBG2
MYBPH
KRT24
FAM166C
BFSP1
TRPV4
ITFG2
ANKRD23
COX5A
NES
ZNF436
ETV4
PDGFA
FOXE3
SLC11A2
SLC16A8
TMEM210
LRRC26
SLC4A2
CDK5
MRM1
CYBA
RNF103-CHMP3
RMND5A
DEPP1
AP5B1
NAP1L4
CRIP2
ARL8A
PRR5
PRR5-ARHGAP8
DUS1L
GALP
NAT8L
MGAT3
ATP5MC3
PALM2AKAP2
SNX12
GBA
DUSP23
KRTAP12-1
UPF3A
RSPO1
TRABD
NEFH
HEYL
CAPN13
CDCA7L
AKIRIN1
HOXA1
PCNA
CDS2
PTGES3
ATP5F1E
HRK
IL17RD
HTR6
KAT6B
SH3BP4
GPR162
DHX32
FAM20C
BOLA3
EEA1
SEMA5B
ZEB2
MTRNR2L1
KCNK6
YIF1B
SLC25A6
GABRB2
TECPR1
SERTAD2
GOLGA6D
ARID3B
NUF2
RIPOR3
LIN28A
KAT6A
SULT1A1
RIPOR1
ZSCAN10
CNOT2
PTP4A2
AP1B1
IFNLR1
UHRF1BP1L
C1orf198
ADGRA1
NFE2L3
TCF7
MTRNR2L2
MSH3
DHFR
FAM72C
SRGAP2B
FAM72D
ACY1
NIPSNAP2
SHANK1
CLEC11A
GPCPD1
ZNF664-RFLNA
ZNF664
CCDC92
INTS10
L1TD1
CYSRT1
NAALAD2
STX18
CORO6
DNMT3L
MTRNR2L8
NANOS3
NPAS2
DSTYK
TNFRSF6B
DENND5B
MYL9
USP30
TNP1
MSI1
GPRC5A
CLDN9
C15orf39
SSBP4
ZBTB17
SAMD11
CXCL12
DLC1
ZNF202
TTYH3
RPH3A
GLIS2
CFAP74
UFSP1
ACHE
RBBP5
RHOT2
GDPD5
SOX4
RHBDL1
ZNF385A
LY6E
LMF1
SOX8
SCAP
FNDC5
POU4F1
FOXP1
UXS1
NBPF15
CTSZ
DNAJB5
TBC1D9
HHIPL1
CCDC85C
KANSL3
FER1L5
LRMDA
ZFHX4
STRA6
ZBTB46
TMEM132B
BCAP31
ABCD1
SV2A
PLAGL1
LIMK1
TOP2B
ECE1
GSG1
LPCAT3
MBD6
DDIT3
SLC30A4
SIPA1
ARID5A
CDK18
PPP2R3A
RGPD1
RGPD2
IKZF4
SBNO2
FXYD3
BAHCC1
SF3A3
CRELD1
PHLDA3
PLPP2
ANHX
ORMDL3
SLPI
NCBP2AS2
NCBP2
ARHGEF16
PFKL
RHOC
SH3BP1
FGF19
PLIN2
C5orf63
FLNC
LRP4
DHRS3
PPP1R13B
DBH
LPIN1
ARPC1B
TNFRSF19
ZNF827
SPSB3
RGSL1
RFX4
EPM2A
CTNNB1
COL11A2
DYRK1B
MAPK12
EDN2
KMT5A
EFNA1
COQ10A
METTL24
MACROH2A1
SEPHS2
MCPH1
C1orf232
S100A16
EMP2
PPP1R1A
FXYD4
SQSTM1
DUSP9
PITPNM2
COLGALT1
GFI1B
TSC1
MAB21L4
VOPP1
HMX3
CD160
FGR
DCP1A
ZDHHC1
ANP32A
EFCAB14
ZNF792
WDHD1
SOCS4
GALNT9
TTLL6
TNRC18
TATDN3
NSL1
SPN
MPP2
FZD7
PANK4
HES5
ZNF44
ATP2A1
DOK7
CCDC88B
DUSP10
MYH11
POU5F1
TRH
SPIB
CACNA1H
MAP6
DLL4
RAB3IL1
ST18
EXTL1
TNNC1
NISCH
ADAR
RCOR2
ABHD12
ZMIZ2
C22orf39
ATP6V1B1
RASSF7
LMNTD2
ZNF615
PHLDB1
TMEM123
ABCB5
TSPAN14
SPIRE2
TRNP1
AGAP2
ZNF639
VAMP8
PPP1R16B
ASB2
SRP68
GALR2
ADAMTS2
ZACN
KLF6
SUN2
SIAH1
RPRM
C7orf33
FGF4
VANGL2
SLC26A11
SGSH
SNRK
TRIP10
GPR108
MBD2
AURKAIP1
TTYH1
DCAF10
STRN
ANKDD1A
NR6A1
CACNA1D
SZT2
MED8
DRG2
SORBS1
GAS2L1
RAD54L2
NEK2
PLCH2
PCCA
BACE2
TYR
CRX
TLE3
SKIDA1
MLF2
ZNF79
NBPF12
PDE2A
UTS2B
CCDC50
M6PR
KLRG1
CACHD1
LDLRAP1
RBM15
PPM1H
ADAMTSL4
TAC4
MIDN
NRG1
FAM210B
TAFA3
PPM1J
PMAIP1
UBAP1
IL24
ISCA1
PLCB3
CLEC4C
SLC2A14
RARB
STK11
LDB1
TBC1D22A
MYBL1
PSMF1
BIN1
MAN2C1
CPA1
FRG2
NYX
FXR1
FAM207A
NMRK2
LMX1B
LMNA
TRPM1
MEX3A
FAM120B
IDH1
SLC4A8
GALNT6
DLL1
CTSC
BBC3
AP3B2
IL12RB1
DUX4
RBM20
MFSD8
ABHD18
PTP4A3
RRP1
DYRK3
GLI3
CYB5R2
UNC5D
MCAM
DDX3X
MELTF
SHH
GLIPR2
MTARC1
NRCAM
THRA
SPIN1
DENND4B
NGB
LCN15
DLX1
DCDC2B
LCN8
CCNDBP1
SERPINE1
SNAP47
JMJD4
TRAK1
NINJ2
DUSP12
TRIP4
MRPL39
NFIC
NFAT5
DSC2
TBC1D8B
XPR1
GOLGA6A
ZSWIM8
CHCHD1
FUT10
DMPK
MUC1
LRIG1
DNAJB1
SLC39A14
KIF13B
SEPTIN6
RCVRN
SMIM5
NANOG
KIF26A
FASTKD1
CNTFR
SPAG8
HINT2
CHD4
FRMD1
GSN
HPN
TRAPPC10
PHB2
KIAA1522
TSPYL2
REST
C1R
LHX2
TAGLN3
GADD45G
MED9
LAMA5
TESMIN
CLUAP1
C16orf90
VCAN
ZNF710
TBC1D19
CDC34
TCF20
PTK7
TUBB2B
MLLT6
SERPINF2
SNX16
CEND1
PKM
NECTIN4
PIANP
MAP2K7
OGFR
CMSS1
NKX1-1
FILIP1L
BHLHA15
WNT10B
WNT1
NEUROG2
TYROBP
IBTK
MED23
HCST
MYL10
MRPL20
ARHGAP40
PEX5
PLD2
ABCC10
SREBF1
TRMT2A
RANBP1
MYCN
NFAM1
KIAA0930
NUBP1
TRIAP1
KMT2D
FABP3
TCF7L1
HOXA4
STRAP
FGF6
IFI16
TRAF2
TEX264
S100A5
S100A6
GDF11
GXYLT2
YTHDF2
GTPBP6
SNAPC5
SMPD1
AJUBA
ST3GAL2
APOC4
APOC2
SFRP1
TMC5
PLK3
CA14
AEBP2
CACNG4
SESTD1
PDE8A
CD99L2
NCDN
KIAA0319L
PNPLA3
SNX8
GTF3C3
INPP5F
OTOP1
INSM1
CRIP1
TEDC1
CCDC88A
BCKDK
TMEM242
EIF2D
ZSWIM4
SLC39A3
EFNA2
STOML2
CYBC1
RIF1
DLGAP4
RNF152
VARS1
CPSF4L
CLK1
PGP
BRICD5
AOPEP
GCLC
TTC4
TRMT112
PRDX5
FAM178B
FGFR3
TLX3
AIF1L
HNRNPA2B1
CBX3
PARL
FIGNL1
TPM3
HSBP1L1
AMOTL2
STMN1
RBPMS2
ANKRD28
AK2
DMAP1
FBXO32
BICD1
OLFML3
SOX14
RBM38
ANKRD27
DUSP16
IQCC
CCDC28B
TMEM40
RGS9BP
PNKD
RCOR3
CCAR2
C8orf58
MAD2L2
CRABP2
ECSIT
POMGNT1
LAMC1
IL11RA
SLC51B
MUC12
USP7
SORBS3
TFAP2A
GLB1L3
FAM83E
SNRPA
C19orf54
TRADD
FBXL8
HSF4
PGF
RBBP9
TIMP3
ZNF3
MYADM
GPATCH8
FRAT2
REPIN1
RNASEK
C17orf49
RPRML
KLK7
NR2E3
FRA10AC1
GPC6
ENO1
SLC16A5
TAF6L
FAM83F
GPRIN2
RXRB
SLC39A7
HSD17B8
SEMA6D
KRTAP10-12
CD7
ALG10
KCNB1
YJEFN3
PLAAT3
C8orf34
ARID2
TMEM222
LZTS2
CD244
GNG4
CDH15
NCOA2
BRWD1
PALD1
ACSF3
ALDH7A1
CLIC5
PPP1R32
MRPL34
ABHD8
ACTR6
RNF220
TRIM54
QPRT
SLC7A5
FAM72A
PEX3
ADAT2
PGLS
SRGAP2
TBL3
GIP
RBPJ
MSX1
DUS2
DDX28
ROCK2
ASS1
RBP1
HMGB1
CPT1A
USPL1
MRPS15
SLC25A36
COL9A2
GADD45B
CYP11A1
SP5
RFX1
BARHL1
S100P
CEP131
ITIH4
MUSTN1
RGPD8
RGPD5
RGPD6
MPRIP
PPP1R3E
MED12L
BCL2L2-PABPN1
BCL2L2
DSCAML1
GADD45A
MID1IP1
P2RX6
PGM2
TSGA10IP
MOB3C
SNRPN
PHACTR1
PCGF2
LTBR
SCNN1A
SULF2
TRIP12
FBXO36
PTMA
FGFR2
USE1
DEDD
ZNF141
VAMP2
NCAM1
PELATON
EFEMP2
BIRC6
PLOD2
NFILZ
C2orf73
LINS1
ASB7
CCDC85A
NPM2
GSG1L
TXNDC11
IST1
NOTCH2NLC
PTPRH
CITED4
ZNF346
PDCD4
ZBTB7B
PCBP3
ZNF677
VN1R2
ESX1
IER3
FLOT1
SNUPN
U2SURP
ECM1
FAM3A
PLVAP
SP7
SSNA1
ANAPC2
MIEF1
CLDN7
NMNAT3
CSRNP3
ADIPOR2
PYGM
DBF4B
PACSIN2
ZNF775
EMC8
COX4I1
TNFRSF12A
THOC6
HCFC1R1
CLDN6
L3MBTL4
UPK3B
APC2
PRDM14
NKAIN4
CCDC59
ZNF341
PICALM
NUP107
CTDSP2
TRIM26
RSBN1L
USP24
IQUB
TIAM1
LOC150051