ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9607666 | NTERA-2
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◣ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

H2AW
GPR35
ZGPAT
ARFRP1
SOAT2
LINGO4
DYSF
CLEC4G
MUC20
TRABD
OTP
LMOD1
KIF21B
MAP3K6
NR2F6
PRSS47
LFNG
CYP1A1
FOXK1
KCNJ4
GALP
TMEM59L
CRLF1
SLC16A8
KLF16
EXOC2
SPIB
LINGO1
CYP26A1
SH3D21
HPD
CDX1
LDB3
GJB6
BIRC7
PLEKHA6
IGFBP5
ZNF746
SFXN3
PDZD7
AGO1
TCTEX1D4
BTBD19
NAT8L
SERPINF2
GLI1
CCDC120
ADGRA2
PNPLA6
TRIM46
NODAL
MAPK15
FOXL2NB
FOXL2
WIZ
CATSPER4
SSBP4
INPP5B
TRMT112
PRDX5
LEFTY2
RHOT2
RHBDL1
TYROBP
HCST
SH3BP4
METTL11B
SSTR5
PSMG3
MYL10
ITGB2
BHLHA15
ZNF79
SERPINB9
VWA1
KMT5C
NAPSA
RIPOR1
KRTAP12-1
WFIKKN1
SKIL
GABRB2
TNFRSF6B
ZBTB46
CADPS
ERCC1
COL4A2-AS2
RXRB
SLC39A7
COL11A2
TPPP3
KCNQ4
TTYH3
PLD2
DNAJB5
ARRB1
CCL26
SHANK2
LAPTM5
NUP93
PAX7
C7orf33
BMF
PLCB3
N4BP3
MDM2
PDE6B
CPLX1
FBXO41
RCC1
HTR6
SH3PXD2A
TPRA1
TLX2
DLX5
CCDC88B
CDK18
COX5A
SH2B1
PCDH1
LAMB2
SOCS3
KRTAP10-12
LHX4
UNKL
GRWD1
PLPP2
TRPV4
SERPINB6
NBEAL2
CCDC12
EXTL1
KCNF1
ADAMTS2
LZTFL1
PRELID3B
APOBEC3G
LAMA5
RNF208
PTK6
SCYL1
ATP2A1
TNNC1
NISCH
SPATA25
NEURL2
CTSA
BRI3
JUNB
LY6E
PDE12
SLC6A12
ANKRD23
DNAH1
TBX6
YPEL3
DIPK1B
CRELD1
APOBEC3D
MEGF8
USP3
CASD1
PMEPA1
SNCG
MMRN2
RUNX1T1
ANTKMT
METRN
RCVRN
SERPINE1
EVPL
LSP1
CD7
LIMK1
DBH
PANK2
SLC26A11
SGSH
LIF
TRIP10
GPR108
MACF1
MAP11
NUDT8
FXYD3
NUP210L
CRYBG2
IL12RB1
ATP2B2
PKNOX2
ATP6V0A4
STEAP3
FAM110D
SLC25A6
GLIS2
HPDL
MTRNR2L1
SPN
EIF4A2
FGF4
PLCB2
AHDC1
PRAM1
CYSRT1
CBFA2T3
AKIRIN1
SULT1A1
CRIP2
PCBP4
GPR62
LEFTY1
TST
MPST
C15orf39
AHSP
SEMA4G
TTC7A
MCFD2
ZMIZ2
TRAPPC3
MAP7D1
ARL8A
A4GALT
TRIL
PFKL
MAPKAPK2
DYRK3
GAMT
ANKRD33
TCF7
FRMD1
HOXB1
ARHGEF16
GATD3B
GATD3A
CAMKK1
KIF19
LHX6
RIPOR3
HOXC4
MBD2
TP53I3
CARD14
TCEA2
IFNLR1
NCS1
CDC34
DPEP3
CCDC22
CACNA1F
TAC4
GCK
PRR5
ADAMTSL4
PRR5-ARHGAP8
ITFG2
CORO6
YJEFN3
SNED1
CITED4
GALNT9
LOC105376731
RPS8
ZNF554
DMPK
CYB5R2
FAM166C
CPE
GRM4
ORMDL3
MXRA8
ADAD2
UCKL1
FSCN1
RNASEK
C17orf49
MTRNR2L8
MINDY2
OTX1
TLN1
CREB3
LMF1
SOX8
MIDEAS
ADGRA1
SPACA6
SOX5
HAPLN3
IL24
LDLRAP1
INHBE
CHCHD10
C22orf15
CNOT2
PITPNM2
CEP295NL
RARB
DHDDS
SLC51A
ZDHHC19
BABAM2
RBKS
PRTG
GPR162
SIM2
PCTP
GUCA2A
AP1B1
SHANK1
CLEC11A
TEAD4
BCL7A
ATP6V1B1
SPATS2L
SKIDA1
HEY2
CFAP20DC
LGR6
TDRD10
DUSP23
ZFHX3
DLC1
MYEOV
NR2C1
LRIG1
WDR18
WBP1L
HOXA1
DONSON
HECTD4
SLC15A3
MYH11
POLR2H
CLCN2
MCF2L
CCDC33
NRSN2
ATP8B3
CPA1
MYRF
SULF2
PGF
MAB21L4
SNX12
LHCGR
FGR
PLCH2
PALD1
ZNF615
ANTXRL
HUS1
AGAP2
KLK7
TLE1
TWF2
EFNA2
MAPK12
APC2
FBLN1
TP53INP1
ANKDD1A
ANHX
MDK
MEGF9
CST6
SVOPL
SF3A3
TIMP3
CSRNP1
CLDN2
NR2C2
DUSP4
HEYL
CDC42EP2
NPM2
KDM6B
ARPC1B
KCNK6
YIF1B
DOK7
HPN
CRABP2
UPK3B
CD160
SLC39A14
ACP4
LOC105372440
PPP1R1A
BRD2
SNX8
TBC1D1
B4GALT5
TSPAN18
C17orf113
CEBPE
UROC1
RGSL1
PPP2R3A
NFE2
SPATA20
BOK
MTRNR2L2
MSH3
DHFR
CD244
POLD1
HOXB3
SDE2
CHD7
HMX3
LOXL1
RPRM
MUC3A
SOCS2
TTYH2
CLEC4C
C16orf70
FAM83E
AP5B1
THRA
RAB3IL1
TNP1
PTGES3
CEND1
INHBA
ARHGEF35
AQP7
KANSL3
FER1L5
MAN1B1
UAP1L1
STX18
MYCN
COL9A2
EMP2
SLPI
DUX4
ANKRD28
FAM120B
TEX264
ARHGEF3
DLL1
KIAA0930
RCAN1
EFNA1
DVL3
SEPHS2
CXCR5
NES
SHH
ZNF512B
UTS2R
ZPR1
APOA5
MBD6
DDIT3
DUS1L
COQ10A
NR6A1
SHISA5
C5orf63
PLCD1
FOXE3
MEOX1
DMAP1
SMIM35
HELZ2
CORO2B
NFIC
LHX2
NECTIN4
COL27A1
RPRML
TTC7B
CHST8
FTL
GDPD5
TTLL10
RARA
APBA2
LOC102724265
KIAA1522
SMARCD3
SMIM5
GPC6
RNF224
CDCA7L
CYBC1
MSI1
UPF3A
TMEM37
TMEM132B
MAP2K3
NKIRAS2
MYLK3
IL17RD
CNTFR
FOXP1
SRCAP
LOC730183
SLC51B
SBNO2
TNRC18
ADGRL1
IGFBP6
ETV4
ZNF346
USP7
NUDT16L1
GPSM1
NUF2
NEFH
IGSF21
XKR7
NOL4L
PCGF3
SZT2
MED8
SUSD3
SLC41A1
SLC4A2
CDK5
HAP1
GARS1
BIRC6
RBPMS2
FAM155B
SETD1B
CYBA
TMEM39B
AP3B2
CDC25B
ATP1A3
LPCAT3
KIF13B
MOB3C
TJP3
S100A16
MACROH2A2
TRAF7
PGP
BRICD5
RASSF7
LMNTD2
INTS10
MPP2
RAVER1
FCHO1
FAM3B
RGS16
DACT3
CTSZ
CLDN9
CLIP1
NFAT5
NAALAD2
NINJ2
TTLL6
ZNF710
PRKCZ
TRH
ALLC
ZFHX4
SEMA5B
PKM
SIPA1
PLK3
CCDC57
FGFR1
PDE4C
NEK3
VOPP1
GSN
CRB2
POMGNT1
BCL11B
ECE1
LRMDA
HHIPL1
CCDC85C
IKZF3
ABCB5
SSR4
IDH3G
ENO2
RSPO1
ISCA1
CAPN13
FBXO31
SPAG8
HINT2
MAN2C1
MCPH1
SERPING1
SERTAD2
GPX4
SERPINA10
AIFM2
TRAF2
THEM4
CPT1B
CHKB
TNC
IL17RB
CHDH
CORO7-PAM16
CORO7
ANKRD9
CNR1
NFYC
ARHGEF5
LTA
ENTPD8
TNFRSF19
PDE2A
FOXJ3
ITPRIPL2
GBA
SEMA6D
LDB1
TSPAN14
ZNF385A
KRT24
TTYH1
SLC30A4
C1orf232
PCCA
FAM169A
TMEM240
MT2A
NRCAM
ARHGAP40
NBPF15
MPDU1
FAM178B
CHD4
UTF1
SOX15
WNT10B
RSBN1L
WNT1
SMG6
NUP107
PUS1
PHLDA3
UXS1
CYP11A1
FLNC
SV2A
C1QTNF8
SECTM1
STK11
FRG2
HNRNPD
PFN3
MYBPH
PELATON
ANXA9
EVPLL
THPO
CHRD
ARSI
C1orf198
RFX1
NFE2L1
SLC11A2
BOLA3
ASF1B
PEAR1
ZBTB7B
OBSCN
NEUROD2
ICAM1
CA14
FGF19
STRA6
TRMT1
NACC1
NKX1-1
TMC6
TMC8
KCNH2
NYX
RNF183
SAG
KAT6A
RGPD8
RGPD5
RGPD6
XKR8
TTLL8
CEP131
RORC
DGKG
SLC24A1
CCAR2
C8orf58
NANOS3
TNS3
SFXN4
INPP5F
ETNK2
SEPTIN5
GP1BB
BFSP1
PTP4A2
MGAT3
ATF3
DAB2IP
KCNB1
TSGA10IP
BCAP31
ABCD1
SPAAR
HRCT1
ZBTB7A
HOMER3
TESMIN
ZNF202
SINHCAF
SCARA3
CHRNB2
TMEM184A
DCDC2B
AIRE
PLIN2
TAF6L
TRPM1
SIK3
GLIPR2
BBC3
ACSF3
PYGM
FSTL3
SIAH1
NIPSNAP2
PGAP6
PDGFA
CFAP74
SRSF10
BTG2
MPV17L
DNMT3L
ZNF335
RABL2B
RABL2A
RWDD1
PSMD1
MAPKAPK5
TAOK3
SUDS3
NME6
CACTIN
NUP85
POLR3F
DZANK1
FAM187A
EFTUD2
CCDC103
NVL
IPO13
DYNC1LI2
VDAC2
HSPA9
GOSR2
VTI1B
PSMG2
CEP76
POLR2E
NUP205
MRPS7
GGA3
FRG2C
HADHB
HADHA
RPL21
NCLN
TBCK
AIMP1
EXOSC5
BCKDHA
C19orf48
BLCAP
DCTN1
TSNAX
REXO1
ATP5MG
SLC35B1
STAM
TSN
STAM2
SEC61B
ALG2
FARSB
PSMD12
LYRM4
FARS2
SRD5A1
PNO1
PES1
PAK1IP1
C6orf52
RBBP5
UPF2
SKP1
ZNF576
IRGQ
NDUFA4
ZNF503
COX7A2L
CAPRIN1
SART3
ISCU
ACTR10
ZRANB2
TTC8
GOLGA5
SUPV3L1
IQCG
DPH6
VARS1
PI4KB
TMED1
RPL35A
RPS23
ATP6AP1L
RPS12
SMC2
ANAPC7
MRPS5
FAM104A
C17orf80
RABGGTB
SELENOF
HS2ST1
USP1
PCBP1
PDAP1
BUD31
EIF4ENIF1
UFM1
ADK
XPNPEP3
ST13
RPS27A
CLHC1
AP3M1
ICE1
APOM
BAG6
PROSER1
NHLRC3
COMMD1
CCT4
SF3B3
COG4
OSGEP
APEX1
RPS29
PAF1
TM9SF1
NEUROG2
NFKBIL1
DDX39B
ATP6V1G2
LRR1
NEUROG3
PTGES2
HES1
PIN4
OR6B2
NDUFA10
SUCLG1
OAZ3
MRPL9
UBE2I
HES3
ARHGAP11A-SCG5
ARHGAP11A
TAF9
RAD17
AK6
STK36
RNF25
MRTO4
EMC1
HOXA4
CDX2
SPATC1L
VEZT
FGD6
ARID3B
FZD8
SEC11C
EIF2S3
GADD45GIP1
RPL7
RDH10
BICRA
SYBU
HOXA3
CDC73
PMAIP1
IER3
FLOT1
ID2
SP2
TMEM107
ARHGAP10
C16orf91
RPN1
NDUFS7
GTF3C4
DDX31
DHRS3
ZP4
GORAB
NEUROG1
CCDC200
ATOH1
NEUROD1
CNPY2
KAT6B
DPP9
BNIP3
TLE3
ZNF383
BBS9
IGFBP2
LBX1
TPM1
TLE4
DNAJB7
MRPL38
SPCS1
GLT8D1
PHOX2B
TTI2
PDHX
APIP
WDR74
HOXA2
ST18
TBX3
LIN28A
ASB2
INSM1
DUSP6
PCGF1
LBX2
METTL24
TEPSIN
NDUFAF8
ERRFI1
PCBD2
DNM2
ANKLE2
COL23A1
ALKBH5
P4HB
TBX2
NPAS4
MLEC
PRUNE2
CS
DLL4
RPS10-NUDT3
RPS10
SP5
TMEM70
ELOC
PDE4D
PDHB
SYNPO
AXDND1
SMAD3
CCNDBP1
MRPL34
DAPL1
CLGN
LPIN1
ARHGEF28
CAMTA1
RAB5B
ID3
TMEM120B
DCTN3
DLX4
PHC2
DOLPP1
ARID3C
ARRDC4
ANK2
RPS24
POLR3A
PGK1
HSPA1B
CBFA2T2
ATF6
RBPJ