ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584308 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◣ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
PSMD1
NUP205
RABL2A
POLR3F
DZANK1
NME6
IPO13
RABL2B
NVL
CACTIN
RWDD1
TAOK3
SUDS3
RPL21
FARSB
C19orf48
TBCK
AIMP1
NUP85
POLR2E
HSPA9
PAK1IP1
C6orf52
VDAC2
MAPKAPK5
PES1
ATP5MG
FAM187A
EFTUD2
CCDC103
NCLN
ANAPC7
SEC61B
ALG2
MRPS7
GGA3
HADHB
HADHA
PSMG2
CEP76
GOSR2
ZRANB2
DCTN1
VTI1B
EXOSC5
BCKDHA
ZNF576
IRGQ
BLCAP
PNO1
UPF2
IQCG
RPL35A
STAM
LYRM4
FARS2
DYNC1LI2
XPNPEP3
ST13
STAM2
PI4KB
SART3
ISCU
NEUROG2
SF3B3
COG4
PCBP1
PSMD12
TSN
TMED1
SELENOF
HS2ST1
RPS27A
CLHC1
FZD8
CAPRIN1
NDUFA4
CDX2
UFM1
ACTR10
ADK
AP3M1
SRD5A1
RPS12
LBX1
SMPDL3A
VARS1
ZNF503
RBBP5
RPS23
ATP6AP1L
SMC2
SUPV3L1
TSNAX
SLC35B1
PRDM12
ERRFI1
TPM1
EVA1A
ANK2
REXO1
SKP1
TTC8
COX7A2L
PDAP1
BUD31
FGF19
RABGGTB
OSGEP
APEX1
APOM
BAG6
PROSER1
NHLRC3
C16orf91
FOXP2
DCTN3
ARID3C
ICE1
PIN4
MYO10
CCN1
LRGUK
ARHGAP11A-SCG5
ARHGAP11A
FAM104A
C17orf80
MRPS5
GOLGA5
MYLK4
DPH6
LRIG3
TMEM107
PAF1
TMEM14A
EIF4ENIF1
USP1
BABAM2
RBKS
SYNPO
SYBU
DMRT3
TMEM120B
PTGES2
HES3
IGFBP2
PDHB
MALRD1
SOX21
DBX1
DAPL1
RGS12
NEUROG3
ABLIM3
C12orf73
FOXD3
PAX8
RPL7
RDH10
BICRA
TLE4
PDZRN3
ZFHX4
MXI1
IGFBP6
SOAT2
NR2F1
RGL1
SEC11C
ABCG2
VEZT
FGD6
PHC2
KCNK16
DUX4
ARHGAP10
UBE2I
LRATD2
NFKBIL1
DDX39B
ATP6V1G2
KRT20
MEIS2
ARHGAP24
PHOX2B
SPACA1
SUCLG1
HOXA4
FRG2C
TLE1
KDM8
HES1
EIF2S3
LRIG1
GPR176
RPS29
LRR1
PCDH11Y
COMMD1
CCT4
ZNF383
SEMA6D
CEP41
STK36
RNF25
CCDC33
LMO4
MRTO4
EMC1
OR6B2
NDUFA10
ARHGEF28
REV3L
CCDC88C
NUTM2D
MNX1
TAF9
RAD17
AK6
CACNA1D
TM9SF1
ZNF608
VCAN
HHIP
RAI14
PRRX1
NEK3
B3GALT5
KDM2B
GADD45GIP1
SULF1
CHMP4C
ATOH1
METTL24
ZFX
TLE2
TEX2
STXBP5L
FHL1
WT1
CLEC18C
BFSP1
PKDCC
METTL11B
NRG2
ELMOD2
BNIP3
RPS24
POLR3A
BAIAP2
SALL1
TP53INP1
TLE3
TPO
CNPY2
RBP3
ALKBH5
FGFR2
SEC22B
PJA2
DTX4
HOXA3
CNTN4
PLEKHA5
TBX3
ASXL3
SLC7A5
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
TYRO3
TTR
MTMR7
LMO1
PDE6B
TNFRSF19
CETN1
CR1L
TESC
MAB21L2
TPST2
SLA
OCLN
DMBX1
HNF1A
MSX1
NPAS1
GORAB
SECISBP2L
GFRA1
TANGO6
FRG2
NEUROG1
CLDN2
PDE1B
NXPH2
TRABD2B
PDE12
RUNX1T1
PPP1R12B
DHX32
OAZ3
MRPL9
CYP26A1
FRS2
PIK3C2A
SLAMF8
NEUROD1
CCDC198
SLC14A1
HOXA2
VOPP1
CD69
GTF3C4
DDX31
HOXB3
DLX4
HOXB4
CATSPERG
PPFIBP2
RPN1
TRMT9B
GCSAM
CLGN
NCOR2
CS
TBC1D8
SLC10A2
AGMO
RARB
TCF7L2
ZNF367
CXXC4
GALNT14
SLC15A3
PANK4
HES5
NOTCH1
PPBP
HOXD3
MEF2C
CNN3
TTI2
ZCCHC13
BAZ2B
SOX6
BBS9
ALDH1A2
CPEB2
BHLHE22
SALL4
ATOH8
SNCG
MMRN2
CTXN3
HOXB1
SLC39A6
CDH16
ST8SIA3
SCHIP1
SOST
ZFHX3
HOXC4
PTGR1
CDC73
ADGRL2
ECM1
CER1
CAMTA1
RBBP7
KIF21B
ID1
ADM
PRDM13
SYTL2
ZGPAT
ARFRP1
RARA
ZDHHC1
LOC102723360
RHOB
PAM
CHD8
GATA3
TCF4
THRA
PARS2
GAD2
EPB41L5
ST18
PRRC2C
OR5A2
TMEFF2
MRPL38
ABCA4
JAKMIP1
AGPAT4
CLEC18B
OTUD6A
CBY2
PCBD2
TMCC3
DUSP6
ZBTB2
PRKCA
NXPH4
LIMK2
WRAP53
TP53
NUP93
CCDC169-SOHLH2
CCDC169
TMEM132C
RBM20
P2RY14
ID2
LIN28A
KMT2A
LIPG
ALG14
CITED2
PDPN
GJA1
WDR59
LMO3
TNRC6B
KCNIP4
TRIM2
SASH1
PDHX
APIP
ZNF746
ALOX5AP
PHACTR2
AJUBA
SSBP3
OAZ2
FLNB
PIMREG
CNTN1
CFAP69
ARSF
NEUROD4
MXRA7
TFDP2
DMRTA1
INSM1
LHX2
AXDND1
PMFBP1
CELF4
DLGAP1
NDUFB3
FAM126B
FOXP1
LRRC10B
TWIST1
HOXA1
ARMC12
PCDH18
TSPAN11
DAAM1
TAS2R8
TAS2R7
FOXB1
CCDC200
KCNN2
FAM107A
SPON1
ANKS1B
UTRN
ACBD5
TPRA1
REC8
ITFG2
FERD3L
GPC6
SOCS3
LIN28B
CCDC59
IPO11
BMP5
LZTS1
FAM120B
DLL1
FHDC1
ERCC1
IGFN1
FMO3
CDC42EP2
RPS10-NUDT3
RPS10
LAPTM4A
FABP5
SH2B1
VANGL2
POU2F1
GALNTL5
PAX3
ARID5B
CDK14
JDP2
USP17L20
USP17L21
USP17L12
USP17L11
USP17L18
SHOX2
RSRC1
SVOPL
MTRNR2L1
MTRNR2L2
MSH3
DHFR
MTRNR2L8
SKIL
SPATC1L
ARID3B
NFE2
PMAIP1
IER3
FLOT1
SP2
NDUFS7
DHRS3
ZP4
KAT6B
DPP9
SPATA25
LEFTY2
TRIP10
GPR108
NEURL2
CTSA
DNAJB7
SPCS1
GLT8D1
H2AW
WDR74
ASB2
PCGF1
LBX2
CDCA7L
TEPSIN
NDUFAF8
DNM2
ANKLE2
COL23A1
P4HB
TBX2
FBXO31
NPAS4
MLEC
MINDY2
HPD
PRUNE2
ANKRD28
DLL4
SP5
TMEM70
ELOC
PDE4D
HUS1
SMAD3
CCNDBP1
MRPL34
LPIN1
RAB5B
ID3
KANSL3
FER1L5
STX18
XKR7
RXRB
DONSON
DOLPP1
ARRDC4
PGK1
SLC39A7
HSPA1B
CBFA2T2
ATF6
RBPJ
OTUD7B
SIRT4
NELFA
MFSD10
UPF3A
KDM6B
KATNB1
PANK2
SQSTM1
TMEM101
TRIB1
CCDC174
FRA10AC1
PPP6R3
ABHD2
ABCC10
RARG
NINJ2
ZNF687
SMARCD2
BCL3
POP5
RFX1
CLCN3
MTMR4
QPRT
GATA4
GPCPD1
NRL
SRSF11
PCGF2
NBPF1
KCNAB2
TOP2A
CCNL2
PSPN
ALKBH7
CNOT2
ANKHD1-EIF4EBP3
ANKHD1
MRPS31
SMG6
LRRC40
NUBP1
SACM1L
ADAP1
USP17L22
DYNLT1
ITGAV
FURIN
NFKBIA
ARSG
MIDEAS
IQSEC3
POLDIP3
NR2F6
RNF103-CHMP3
RMND5A
DCAF11
HEXIM2
RASSF5
PXYLP1
SP1
PCNA
ZFAND2A
OSBP
NLK
PPCDC
ABHD8
STIP1
EIF2AK3
KAZALD1
RNF207
DLG2
CSF3R
RHBDD1
HMGCS1
SOD2
AHDC1
MDM2
ATP5F1B
GADD45G
SLC45A4
HNRNPA2B1
CBX3
PSMD6
RAB11B
KNL1
AGO1
G3BP1
LPCAT3
KMT5A
NCOA2
EVI5L
DSCAML1
RTN4
TRAF7
MACROH2A1
FTL
JUP
PRDM10
DDA1
HNRNPD
SREBF1
POLG
FAM107B
SMIM20
DLC1
CRLS1
GRSF1
B4GAT1
TRIM46
LIG3
MYRIP
MTF2
SHF
MBD6
DDIT3
MIDN
RBFOX2
PLEKHG2
SPG7
TPCN1
SEPTIN9
CCL26
GLRX5
ANTKMT
PKN2
SSBP4
FST
DAGLB
SLC6A12
LCK
FAM167B
GADD45A
CBX5
TMEM94
BAHCC1
CCDC43
RGS3
ARAP1
KDM3A
INAVA
ZFP36
NCDN
KIAA0319L
PRMT5
EIF3D
ATP6V1E2
TLN1
SLC30A4
CREB3
STAP2
ACYP1
MYEOV
HPCAL1
SH3YL1
ACP1
H3C12
H2BC17
H2AC17
DIABLO
FGR
ZBTB18
MRPS28
PLEC
CYP51A1
RAB37
COX5A
STX1A
SERPINB1
SERPINE1
HOXC6
LRCH4
FBXO24
RHOQ
GMEB2
ARID2
HMGB1
ANKMY1
CIC
FRMD3
ARHGAP4
HNMT
ARID5A
CAPNS2
UGP2
CNKSR3
NKD1
CPT1A
ROGDI
DNAJB3
LTBR
KIAA0319
BRMS1
MRPS24
TRDMT1
SYNJ2
LAPTM5
ARHGEF10L
HOXC5
TES
PHETA1
RNF166
KCTD7
EFEMP2
LNPEP
RAC1
CDS2
INSM2
EIF4H
CSRNP1
MBD2
CMSS1
USP42
INAFM2
ARID4A
ANKRD1
DUSP9
ILF2
LFNG
PNKD
LIMA1
ARL8A
IFI16
TXNDC11
ZNF414
PLAGL1
TDRKH
TUBB4B
TXNRD1
HTR5A
AIFM2
EVPL
SEC14L1
SYTL3
HIBADH
CERK
IKBKB
WTAP
LMNA
ZNF76
LUC7L2
LRP5L
GTF3A
PRKACA
UBE2F
LAMP1
SORBS2
NRSN2
NR2C1
MSX2
KLHDC2
MT2A
IL6R
NRM
SLC35A3
BHLHE40
COMTD1
CXCR4
TCTEX1D4
BTBD19
IQGAP2
CFL1
TIGD1
EIF4E2
CPSF4L
TUBGCP3
CDK6
RBM15
SH2D6
UACA
ZNF77
CCDC88A
RNF34
USPL1
CCDC88B
RNF149
NRCAM
NEDD9
GSTP1
RNPEPL1
NRXN1
EPM2A
SH3BP2
IRF9
PIKFYVE
PIGV
ZNF3
H6PD
ING1
GOT1
TBL1X
PAX6
TMEM60
PHTF2
RASSF2
ZDHHC4
MYADM
EIF1B
CCL16
KRI1
CDKN2D
E4F1
ANKS4B
CBX4
NANP
USP3
KCNH7
CYB5R4
TF
METRN
DCAF7
NKIRAS1
KLF6
TRAF4
WDR97
MAF1
SCAP
NCOA7
ZNF595
ORMDL3
CRKL
SEMA5B
OPRM1
POLR3E
GFOD1
PKM
TUBB
INHBE
NKX1-1
GPAA1
EXOSC4
YTHDF2
ZNF827
MARCHF3
CXXC5
STX16
ATP2B2
RNF144A
CASC3
CLK1
PC
ICAM1
ATG16L1
ERI3
SMIM11B
SMIM11A
CEBPE
TRIM7
CDC42EP3
RXRA
TSPAN4
POLR2L
NFE2L1
NCBP2AS2
NCBP2
ENO1
SRSF2
SLC25A19
MFSD11
KPNA4
UGT1A1
FAAP24
CEP89
IRS1
GSN
PCTP
PARK7
HECTD4
UNC13D
ATP5MC1
TRAF2
PLEKHF2
TACC1
TCHP
L1CAM
ANP32E
CELSR3
MPND
ACVR1
PXMP4
MPC1
TTC30B
GPT2
GGT1
NEO1
CCDC114
SH3BP4
HSP90B1
C14orf93
ZC2HC1C
ETV4
PAQR8
DUSP12
UBE2C
SRCAP
LOC730183
GPATCH8
DGKZ
RHBG
DDX1
ETFBKMT
CALM2
GBA
BRWD1
RTBDN
FAM24A
HNRNPC
TMC6
TANK