ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX6039037 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◣ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

RABL2A
RABL2B
MAPKAPK5
ZNF335
PSMD1
CACTIN
ZNF503
DYNC1LI2
NME6
POLR3F
DZANK1
RWDD1
TAOK3
SUDS3
PSMG2
CEP76
VTI1B
IPO13
NUP85
FAM187A
EFTUD2
CCDC103
VDAC2
NVL
HOXA2
GATA4
STAM2
SKP1
LYRM4
FARS2
HSPA9
NCLN
GOSR2
TBCK
AIMP1
UBXN10
UPF2
DCTN1
SRD5A1
POLR2E
NUP205
ATP5MG
IMPG1
TSN
REXO1
IFI16
EXOSC5
BCKDHA
COX7A2L
MRPS7
GGA3
SEC61B
ALG2
BLCAP
C19orf48
STAM
TSNAX
MRPS5
ACTR10
ICE1
NTRK2
SLC35B1
RPL21
GOLGA5
TTC8
VARS1
PSMD12
PNO1
ARHGEF10L
FARSB
SUPV3L1
HADHB
HADHA
BBS9
PES1
FAM104A
C17orf80
PAK1IP1
C6orf52
HOXB3
HOXB5
PI4KB
HAND1
FRG2C
RABGGTB
EIF4ENIF1
USP1
ZRANB2
MECOM
ZNF576
IRGQ
ETFBKMT
XPNPEP3
ST13
BABAM2
RBKS
ADK
AP3M1
ANAPC7
UBE2I
SMC2
CELF4
SCRG1
TM9SF1
UFM1
RPS23
ATP6AP1L
LAPTM4B
DPH6
RPS12
RUNX1T1
IQCG
RPL35A
LRRN4
NDUFA4
CAPRIN1
SART3
ISCU
ERI3
SF3B3
COG4
PCBP1
PAF1
TBX2
SELENOF
HS2ST1
PROSER1
NHLRC3
NFKBIL1
DDX39B
ATP6V1G2
RBBP5
SUCLG1
CLGN
TMED1
RPS27A
CLHC1
NEO1
DUX4
OSGEP
APEX1
OR6B2
NDUFA10
SIRT4
APOM
BAG6
TBX3
NR2F1
COMMD1
CCT4
OAZ3
MRPL9
DMD
HOXC4
HOXC6
VPS13A
CITED2
DMAC1
CCN1
PTGES2
ELOVL6
HEXIM2
KDM2B
HOXA4
HOXA3
PDE12
CD244
UNC5C
RARB
BICRA
NTAQ1
MRTO4
EMC1
SHOX2
RSRC1
PRXL2A
ANKLE2
MEIS1
LOC102723360
HES1
PDAP1
BUD31
LIN28A
PLEKHF1
NDUFV2
ZAP70
LZTS1
PLAGL1
TMEM141
STK36
RNF25
TLE3
EIF2S3
PRUNE2
DIAPH3
NUBP1
PDE6B
CXXC4
MELK
TMEM120B
KRTAP23-1
MGST1
DCTN3
ARID3C
CPA1
PIN4
ZNF608
RPL7
RDH10
CYP26A1
SNCG
MMRN2
FAM205A
ZFHX4
SKIL
METTL24
SLC19A2
WT1
SSH1
TAF9
RAD17
AK6
TPM1
RARA
EMP1
TTI2
P2RX6
CNR1
MRTFB
NXPH2
ADAMTS8
ASPG
ZNF3
COPS6
ACKR3
FRG2
TMEM9
ARHGAP11A-SCG5
ARHGAP11A
TYRO3
HIP1
ID2
ERVW-1
FLVCR1
PAEP
FOXP2
SEH1L
PPFIA2
HOXB9
COLEC12
TLE2
NIBAN1
MEOX1
TMEM14B
ZGPAT
ARFRP1
CATSPERG
PACRGL
PGPEP1L
KIAA1217
LIX1
RPN1
POP5
FGF7
USP34
LRIG3
ZNF587B
GADD45A
SOX5
TUBB
LYPD1
MDC1
SEPTIN9
TNP1
RBPJ
GC
CNPY2
RPS24
POLR3A
PLCH2
PKDCC
SPTBN1
HOXB8
HOXB7
GOLGA8T
GOLGA8K
TMEM107
BNC2
PPP1R3D
FAM217B
SCMH1
SH3RF2
ACVR1
NDUFS7
HOXC5
EIF3D
CCDC183
PEDS1-UBE2V1
PEDS1
CFLAR
CCDC200
POLR2D
TXNRD1
KDM3A
CYP51A1
PCDH18
GABRB2
SERINC3
RPS29
LRR1
SLC48A1
KRTAP13-1
DSCAML1
ZBTB18
GADD45GIP1
CCNDBP1
HOXA6
HOXA5
PCDH15
SPRR2F
CCDC174
TLE4
SMAD3
SACM1L
FBXO34
ITGA3
CNTN1
SALL4
AKAP12
GBP3
RND3
SH2B1
ZFHX3
SVOPL
PKNOX1
POLDIP3
ABCC9
SEC11C
TMEM14A
ADRB3
NAGLU
H2BC5
H1-4
FEM1B
EVPL
CCDC59
KANK1
TMSB4Y
FZD8
ERCC1
ZSWIM6
POU2F1
CBFA2T2
GOLGA8N
GOLGA8H
MYPN
AQP1
ECHDC1
CAPN7
RAPGEF4
AKAP13
PDZRN3
TCF7L2
EYA1
CDC42EP3
SLC22A5
CDIN1
SNX16
GPR82
ZNF383
GORAB
VANGL2
SIPA1L1
NPM3
FGF8
REC8
SLCO2B1
HERC6
TBX18
SVEP1
IGF2BP3
C9orf153
GTF3C4
DDX31
CDC73
HUS1
PPP1R21
RNASEH2B
CCN2
MPDZ
NELL2
BCL11B
SORBS2
SCHIP1
GFRA3
SPRY1
NNMT
SFXN3
PDZD7
C1orf105
ZYX
FAM131B
PGF
FOXP1
MXD1
EPC1
ACY3
SPIRE1
TRPS1
RBM20
HMX2
MXRA7
C12orf29
OSBP2
GYPC
PFKFB3
NFIB
RCOR3
FSIP1
SLC7A7
ZNF341
ARL6IP5
UBA3
JCAD
TNFRSF19
HEY2
HMGCS2
PDK1
PDGFRA
NRG2
ERCC4
SIGLEC15
SCOC
PGK1
CDK6
WDR82
ASXL3
MYLK3
TMCC3
R3HCC1L
ZNF430
ID3
KCTD7
ZP3
GDPD5
NT5C3A
GNGT1
TMEM185A
USP17L20
USP17L22
RAB17
COPZ1
KCNIP4
SEMA3E
HAPLN1
KIF4B
ZNF746
CDH18
RERG
RNF207
HNRNPD
OTUD4
GPSM3
TYRP1
PBX2
INPP4B
PDE6A
SLC7A5
ANKRD33B
CCDC175
ALKBH5
VTN
SARM1
IRS2
SHB
RCOR1
TEPSIN
NDUFAF8
SLC25A6
VOPP1
SYNJ2BP-COX16
SYNJ2BP
MAD2L2
DRAXIN
ANXA11
CACYBP
FHL2
BNIP3
SRSF11
LRRC40
TCF4
MGST2
THRA
ABCA4
PLA2G2E
SALL3
DUSP6
CEP70
SSBP3
CFAP69
UBL4B
TRIP12
FBXO36
CD248
SLC9A3R1
ESRRG
CDK15
PCNX4
ZNF853
CDH3
WDFY3
NDUFB3
FAM126B
ENTPD4
ABLIM3
SERTAD2
ZNF280D
ACYP1
ZC2HC1C
PKP2
MID1
MYOM2
KRT18
NR2F2
ZNF367
DLG2
CRKL
ELAPOR2
ZSCAN30
CS
OLFML1
MEGF6
ITGBL1
SLITRK6
ALPK2
PCBD2
CPPED1
DNAH12
HSPB3
MPPED2
WWP2
TNNT2
SPRED2
SRI
BNIP2
IL1RAPL1
NR2F6
HNRNPA2B1
CBX3
PDHB
ATXN2L
CLASP2
RIPOR2
LIPC
DHRS3
CEP41
SNX8
USP2
PLAAT2
PDCL3
MEIS3
C9orf92
CSRP1
FNDC5
SUPT7L
SLC4A1AP
KAT6B
UBE2H
QPRT
CELF2
SLC28A3
GRWD1
CTF1
BCL7C
ARHGAP28
DIP2C
ELK4
RANBP17
GFRA1
RGS5
PAQR8
PMFBP1
SKIDA1
DGKZ
SEC24A
DNAJB4
ALX1
RASSF4
ART5
ART1
NEUROG2
MTRNR2L1
NEUROG3
MTRNR2L2
MSH3
DHFR
HES3
MTRNR2L8
CDX2
SPATC1L
VEZT
FGD6
IGFBP6
SOAT2
ARID3B
NFE2
PMAIP1
IER3
FLOT1
SP2
ARHGAP10
ZP4
NEUROG1
SYBU
ATOH1
NEUROD1
DPP9
LEFTY2
IGFBP2
LBX1
SPATA25
TRIP10
GPR108
H2AW
NEURL2
CTSA
ST18
HOXA1
ASB2
INSM1
CDCA7L
WDR74
ERRFI1
DNM2
FGF19
TPRA1
CCDC33
P4HB
FBXO31
NPAS4
PDHX
APIP
MINDY2
HPD
PHOX2B
ANKRD28
DLL4
SP5
TMEM70
ELOC
PDE4D
C16orf91
MRPL34
DAPL1
SPCS1
GLT8D1
LPIN1
ARHGEF28
CAMTA1
RAB5B
KANSL3
FER1L5
KIF21B
STX18
DLX4
TLE1
RXRB
PHC2
DONSON
DOLPP1
ANK2
SLC39A7
SYNPO
ATF6
COL23A1
MSX1
OTUD7B
MFSD10
UPF3A
PRRX1
KDM6B
KATNB1
SMPDL3A
SQSTM1
ARRDC4
XKR7
TRIB1
MRPL38
FRA10AC1
PPP6R3
ABCC10
RARG
NINJ2
ZNF687
BCL3
RFX1
CLCN3
ABHD2
MYLK4
MTMR4
GPCPD1
PANK2
NRL
PCGF2
NBPF1
KCNAB2
TOP2A
CCNL2
PSPN
ALKBH7
ID1
CNOT2
ANKHD1-EIF4EBP3
ANKHD1
MRPS31
SMG6
ADAP1
BAIAP2
ITGAV
FURIN
NFKBIA
SMARCD2
MIDEAS
PCGF1
LBX2
IQSEC3
RNF103-CHMP3
RMND5A
DCAF11
RASSF5
SP1
PCNA
ZFAND2A
OSBP
NLK
PPCDC
ABHD8
STIP1
EIF2AK3
KAZALD1
CSF3R
RHBDD1
HMGCS1
SOD2
AHDC1
LRATD2
DNAJB7
MDM2
ATP5F1B
GADD45G
SLC45A4
RAB11B
KNL1
RBBP7
AGO1
G3BP1
LPCAT3
KMT5A
NCOA2
EVI5L
KDM8
RTN4
TRAF7
MACROH2A1
FTL
DYNLT1
JUP
PXYLP1
DDA1
MALRD1
GPC6
SREBF1
FAM107B
SMIM20
MEIS2
CRLS1
GRSF1
SOCS3
B4GAT1
TRIM46
EVA1A
MYRIP
SHF
MIDN
METTL11B
RGS12
RBFOX2
PLEKHG2
SPG7
ARHGAP24
POLG
CCL26
ARSG
GLRX5
ANTKMT
SSBP4
FST
DAGLB
SLC6A12
LCK
FAM167B
PSMD6
ARAP1
INAVA
ZFP36
BFSP1
NCDN
KIAA0319L
PRMT5
NEK3
ATP6V1E2
SLC30A4
STAP2
MYEOV
TMEM94
HPCAL1
SH3YL1
ACP1
NELFA
H3C12
H2BC17
H2AC17
DIABLO
FGR
ADM
MRPS28
PLEC
SEC22B
RGS3
RAB37
COX5A
STX1A
SERPINB1
SERPINE1
LRCH4
FBXO24
RHOQ
CACNA1D
ANKMY1
FRMD3
ARHGAP4
CAPNS2
CNKSR3
KMT2A
NKD1
CPT1A
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
ROGDI
DNAJB3
LTBR
BRMS1
MRPS24
SYNJ2
LIG3
LAPTM5
MTF2
TES
PRDM10
PHETA1
RNF166
AXDND1
EFEMP2
RAC1
CDS2
INSM2
HNMT
ARID5A
HOXB1
CSRNP1
UGP2
MBD2
CIC
CMSS1
USP42
ARID4A
ANKRD1
DUSP9
ILF2
LFNG
PNKD
ARL8A
ZNF414
TDRKH
LNPEP
TUBB4B
DLC1
HTR5A
AIFM2
SEC14L1
HIBADH
DMBX1
INAFM2
IKBKB
WTAP
LMNA
LUC7L2
LRP5L
GTF3A
PRKACA
UBE2F
HMGB1
LAMP1
MBD6
DDIT3
NRSN2
MLEC
NR2C1
MSX2
KLHDC2
MT2A
IL6R
HOXB4
BHLHE40
ARID2
RAI14
COMTD1
TCTEX1D4
BTBD19
IQGAP2
CFL1
C12orf73
TIGD1
EIF4E2
CPSF4L
TUBGCP3
TPCN1
RBM15
TLN1
CREB3
SH2D6
UACA
ZNF77
CCDC88A
RNF34
CCDC88B
RNF149
NRCAM
NEDD9
CR1L
RNPEPL1
TRABD2B
LRIG1
EPM2A
SH3BP2
IRF9
PIKFYVE
PIGV
SYTL3
H6PD
ING1
GOT1
RPS10-NUDT3
RPS10
TBL1X
HSPA1B
PAX6
RASSF2
MYADM
EIF1B
CCL16
KRI1
CDKN2D
E4F1
ANKS4B
CBX4
NANP
USP3
ZNF76
KCNH7
CYB5R4
PRDM12
TF
METRN
DCAF7
NKIRAS1
KLF6
TRAF4
WDR97
MAF1
TRDMT1
SCAP
NCOA7
ZNF595
ORMDL3
SEMA5B
POLR3E
GFOD1
INHBE
NKX1-1
GPAA1
EXOSC4
ZDHHC4
ZNF827