ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX20230567 | Ishikawa
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◣ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

B4GALNT3
CLTC
CTNNB1
MTF2
NOTCH2NLC
LRP6
ATAD2
CALM3
PPP5D1
MRM3
GLOD4
CCNL1
KMT5B
CCDC88A
NOTCH2NLA
MRPL21
IGHMBP2
CALM1
LAMP1
BRWD1
PHIP
SSNA1
ANAPC2
TMEM41A
SOD2
WTAP
ZC3H6
RASEF
STX18
DDIT4
NOTCH2
TRIAP1
COX6A1
HEXIM2
PKM
NAGPA
ADNP
UBE2B
CDKL3
ZFAND2A
IST1
LAT
SPNS1
EIF2D
ATG14
TSN
SEC13
KPNB1
PIK3IP1
NCBP2AS2
NCBP2
ZKSCAN2
RPS2
RNF151
TBL3
NOXO1
MCM7
AP4M1
MXD4
MRTO4
EMC1
GPAM
NMNAT1
LZIC
PDE6D
COPS7B
TMEM199
SEBOX
POLDIP2
HOXD9
HOXD8
TRIP12
FBXO36
NOTCH2NLB
RCL1
SLC44A2
DOLPP1
TOB2
PNRC2
MFN2
PNRC1
COPS8
PEPD
TIMM22
SCGB1C2
CALM2
NXF1
TMEM222
DIP2A
UBQLN1
HMGCL
KCNIP2
NOC4L
DDX51
POMZP3
RPS28
NDUFA7
UBE2D3
FOXJ3
ADPGK
ENDOV
HEXA
MTMR2
WASHC2C
RERE
GTF2H3
EIF2B1
TOMM22
SCGB1C1
ODF3
CYP51A1
ZNF721
PIGG
PRTG
ZNF212
DSTYK
SPRED1
VPS37A
CNOT7
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
STX16
NUP214
KMT2D
RHEBL1
TCF3
RPL22
RNF207
DCP1A
TMA7
CCDC51
ATRIP
HAGH
FAHD1
PSMD3
MRPL4
DOHH
FZR1
SUMF1
UBC
WDR53
FBXO45
HSP90AB1
TSPYL2
WASHC5
NSMCE2
PINX1
ATXN2L
TBCB
POLR2I
OVOL3
MAPKAPK5
POLR2J3
WASHC2A
SPATC1L
RCOR1
ACOX3
TRMT44
TAS1R1
NOL9
MYBL2
TRMT61B
PRKACA
OAZ3
MRPL9
GTF3C5
C8orf33
PELP1
ARRB2
MRPS35
CCDC77
KDM5A
CORO7-PAM16
CORO7
DNAJA3
DDX23
PBLD
HNRNPH3
PTEN
KLLN
CMTR1
SMN2
SMN1
PCID2
CUL4A
SPATA25
NEURL2
CTSA
ZSWIM1
SNRNP70
OPA1
MRPL58
PRSS22
UBN1
GLYR1
RBM42
HOXD10
CYCS
ARHGEF12
COQ7
FRA10AC1
GHITM
PEX3
ADAT2
IPO11
DIMT1
TAF5
USP30
PARL
PPT1
WDR25
WARS1
DNAJC11
PACSIN3
ARFGAP2
CHCHD1
ZSWIM8
FUT11
FAM180B
NDUFS3
KBTBD4
FUS
DUS2
DPEP2NB
DDX28
ACSL3
TMEM79
SMG5
MRPS15
ARNTL
SMPD4
MZT2B
TMEM262
ZFPL1
CDCA5
GCHFR
RMDN3
NDUFS7
UHMK1
CHD2
SARAF
LONP1
CATSPERD
COMMD1
CCT4
COQ9
CIAPIN1
SPTLC1
ATP8B1
CASC3
AJUBA
ZSWIM7
TTC19
TAGLN2
PPIL4
PHAX
ALDH7A1
FAM207A
CNP
ARF4
SRP68
ZACN
GALR2
RPS6KB2
PTPRCAP
UBIAD1
HMGB1
USPL1
PMPCA
ENTR1
ECSIT
CNN1
C16orf89
ALG1
TCF12
NBPF1
TMEM128
VCPKMT
DPP8
NSFL1C
CDKN2C
FAF1
USP42
GNB2
TOP3B
CFAP410
CLCN7
LMTK2
SUPV3L1
TSR2
MARCHF8
ADK
AP5Z1
CKS2
SECISBP2
TEKT2
ADPRS
TPRN
TMEM203
NDOR1
RFXANK
BORCS8
MYLIP
ULK2
MAML3
NABP1
HNRNPL
CACTIN
RLF
MRPL39
VDAC2
TTC4
RUSC2
RPLP0
GCN1
SRRD
HPS4
TXN2
HDAC10
TUBGCP6
PARPBP
NUP37
GET3
GRHL2
RANBP2
CALR
RAD23A
DPP9
ZNF800
TIMM50
C5orf51
TSR1
SGSM2
NDUFV1
TARBP2
MAP3K12
NPFF
MOB3A
IZUMO4
OR6B2
NDUFA10
MVD
SMAGP
KDM4B
PIK3R3
DYRK1B
DNAJB12
DCAF10
YPEL2
TBRG4
C6orf132
CRBN
ZC3H3
ZNRD2
FAM89B
EHBP1L1
VPS33A
MANF
RBM15B
GOLGA1
SRSF11
LRRC40
MRPL37
CYB5RL
XPO4
PLEKHM3
KCTD9
CDCA2
SRPRA
TBCCD1
DNAJB11
FPGS
SLC25A1
PGS1
FAM204A
TRMU
EIF3F
SURF6
MED9
TIMM21
FBXO15
RPL6
PTPN11
SMIM12
NOP14
GRK4
TMEM217
TBC1D22B
FBF1
BECN1
PSME3
PSTK
FAM76B
CEP57
RCOR3
C4B_2
C4B
STK19
LOC110384692
DXO
C4A
KCTD5
MKNK2
DDX1
REXO1
IP6K2
MRPS11
MRPL46
SESN3
LRRC59
PHF5A
ACO2
BRIX1
NUP160
DDX50
BRPF1
DBNDD2
TOB1
EXOSC3
SRSF6
ZNF326
AMD1
SPRYD4
MEF2D
TENT5C
PCCB
MAN1A2
GIPC1
ABRAXAS2
EEF1AKMT2
TMEM88
KDM6B
CTDP1
SLC38A2
LDHA
SLC35B1
UBOX5
FASTKD5
GARS1
SPRYD3
NOL7
DCAF1
GABARAP
ELP5
CTDNEP1
CLDN7
PI4K2A
MORN4
DIP2B
KLF5
BCKDK
KAT8
FANCD2
TEPSIN
NDUFAF8
TNKS
RPS5
OAZ1
PRRC2A
AIF1
RPUSD4
FAM118B
TIMM44
RRP7A
MICU2
GSTO2
NUP188
DOLK
P2RY11
PPAN-P2RY11
PPAN
ANGPTL6
PPP1CA
RAD9A
SLC7A6OS
PRMT7
MRPL55
ATP6V0D1
AGRP
AVPI1
TSEN54
CASKIN2
LLGL2
TSR3
GNPTG
TMEM184A
RRBP1
SMIM13
COL12A1
EIF2B5
NCL
LAD1
CLDN4
H2AX
DPAGT1
HMBS
ATP6V1C1
DCAF8
TAF15
DYNLL1
MCU
ZWILCH
SNAPC5
RPL4
RTF2
DIABLO
MCCC1
HTRA2
DQX1
TAF3
DOK7
TFRC
THOC1
PALB2
DCTN5
COG2
LRRC57
HAUS2
TMED2
LTO1
SLC39A5
RNF41
NABP2
SPOUT1
RASSF1
TUSC2
HYAL2
THUMPD1
NDUFAB1
ZNF292
TIGD6
HMGXB3
ATG7
TFDP2
AMOTL2
AMIGO3
GMPPB
MRPS30
EIF4A3
UMPS
VAMP1
EIF4A2
AARS2
UBE3B
HPS5
GTF2H1
NUDT15
ANXA7
LANCL2
CDKN2AIPNL
WDR43
NDUFB8
HIF1AN
KLHL12
GTF2B
IDH3B
APTX
DNAJA1
TAOK2
SFSWAP
UNK
H3-3B
TMSB10
GABPB1
FAM161B
COQ6
KPTN
LATS1
DPY19L4
WDR18
MOB4
MRPS7
MIF4GD
GGA3
ALKBH3
DCPS
ELF2
ATP6V0C
AMDHD2
GRHL1
RFX3
KRT80
CNIH3
CDK5RAP1
JMJD1C
NME6
UQCRC1
EEF2
ETNK1
ASAH1
CBWD2
CCDC43
ZFAND4
DDAH1
CCN1
EXOSC10
ORMDL3
GSDMB
SRSF1
SH3GL2
SDE2
ZBTB45
SLC27A5
FAM133B
ZNF839
RNF141
RNF125
ZNF517
ZNF34
RPL8
YEATS4
WDHD1
SOCS4
TRAPPC2L
GALNS
FREM2
METTL9
MTHFD2
TRIP4
PCLAF
TEFM
FBXL12
UBL5
HGS
ARL16
PTPN4
WTIP
POLR3D
PDCD4
CFAP43
ZNF358
MCOLN1
HAUS5
RHNO1
FOXM1
ZNF789
ATP5MF-PTCD1
ATP5MF
ID2
EXO5
PA2G4
TSG101
MON2
PACSIN2
PSPH
CCT6A
SART1
HERPUD1
GXYLT1
MSTO1
FBXO24
LRCH4
TULP3
SP2
TOP3A
SMCR8
PKN2
ZER1
XPNPEP3
ST13
DNAJB7
RPLP1
CMTM7
CCT2
MDM4
MEF2A
CLN8
POLG
NLK
GTF2H2C_2
GTF2H2C
FBXW2
PSMF1
DOK3
DDX41
VAC14
PPRC1
FAM53C
CDC25C
MRPL18
TCP1
ELAC2
IER5
TDRD9
ATP5MPL
UNC50
COA5
CENPBD1
GNAL
CHMP1B
PSMD6
PPP2R3B
IL4I1
NUP62
ATF5
SLC25A28
MRPS2
C9orf116
ZNF337
TARDBP
ZSCAN22
CLIC4
SLC25A26
ZGPAT
ARFRP1
ZC3H10
RPL41
ESYT1
PFDN2
NIT1
HNRNPAB
BRAP
ACAD10
RPS3
EIF1
CIAO3
U2AF1L5
U2AF1
SETD1A
ORAI3
RNF166
CTU2
LNPK
ZNF148
GRAMD2B
NAA80
IFRD2
HYAL3
DCP1B
POLR2M
ERI1
ZNF594
WSB1
UBAP2
ERRFI1
H2BC21
H2AC21
H2AC20
NEK9
RANBP3
WDR61
DENR
LIPA
ZNF384
FAM187A
EFTUD2
CCDC103
C6orf226
RNASEH1
UBE2D2
KLF10
MPHOSPH10
MCEE
COQ10A
ANKRD52
MKS1
PSMD12
TCTE3
ERMARD
ASH2L
TDRKH
NOL10
EHD1
GLRX3
PLXNB2
ATXN7L2
CYB561D1
FEM1C
RDH5
ITGA7
BLOC1S1
MED4
SCNN1A
LTBR
SH3GLB2
MIGA2
PHF23
DVL2
STAM2
TBC1D30
GNS
IDI1
WDR37
C19orf48
FAM156A
FAM156B
ZSCAN25
ATXN2
TSPO
MCAT
TMPO
TIGAR
SULT2B1
EXOSC8
ALG5
PSMD2
ZNF875
CDH1
BLOC1S2
RNF103-CHMP3
RMND5A
TAF1B
MFSD1
OSCAR
NDUFA3
ZFAND5
ZW10
CLDN25
EDF1
C2orf69
QTRT1
PTPN6
C12orf57
ATN1
PNP
PIP4P1
SRSF5
NUP93
SIRT3
PSMD13
KDM3B
TRIM13
NOM1
INO80
CABIN1
TRIM65
MRPL38
PCYT1A
TOP2B
MTHFSD
GID4
ATPAF2
PDCD6IP
KIF1B
PDF
NIP7
COG8
TPP2
SMARCA5
POR
ATP9B
HBS1L
RPSA
TXNDC15
IARS1
STYXL1
CAAP1
ITGB8
POLR2C
ECHS1
REXO4
ADAMTS13
GPN2
XPOT
ERCC6L2
SRF
CUL9
SENP5
AURKAIP1
PCNA
TMEM230
WDR4
SLC25A37
CLPX
SYCE2
EPHB3
SLC24A1
INTS14
TMEM104
NAT9
NUDCD3
CZIB
ABAT
RAD54L2
ACAD9
SMIM41
ATG101
HMGCS1
TTC9C
HNRNPUL2
SH3YL1
ACP1
CNBP
YIPF4
EXT1
VCL
RPS20
YWHAQ
BUD13
TMEM242
SLC25A38
ALDH3A2
ASAH2B
GMFB
KATNBL1
PFKM
SENP1
ZFP36
PLEKHG2
ANXA2
GTF2I
GATAD2A
RBM18
MRRF
PKP4
CCDC148
PPP1CC
TMEM109
PRPF19
CANT1
PSMD8
CDK11B
PLEKHH3
CNTNAP1
CCR10
ARHGAP19
SHBG
ANKFY1
FXR2
AGK
WFDC3
DNTTIP1
EEF1E1
UFL1
RBSN
CEP350
MRPL40
HIRA
PARK7
CPEB3
MARCHF5
ASNS
PCNX4
MIDEAS
C16orf95
ASB6
EXOC2
CENPS-CORT
CENPS
COMMD2
MRTFA
THAP4
ATG4B
YIPF6
ELF1
WBP4
SNRPD1
C16orf70
PGAP2
SC5D
TRPC4AP
ADARB1
MINPP1
EIF5
RPL18A
GET4
HAP1
FEM1A
RBL1
NDUFS6
MRPL36
MTG1
UBE2S
YTHDF2
ZBTB17
MAD1L1
NUDT1
MRM2
YIF1A
TMEM151A
TRMT2A
RANBP1
LUC7L
FAM234A
RPL17-C18orf32
RPL17
C18orf32
ADCK1
CLDN6
TNFRSF12A
THOC6
HCFC1R1
CACUL1
TUBGCP5
GTF2IRD2B
AGAP3
TMUB1
FASTK
CCDC91
NFKB2
NFYC
SAR1B
YBEY
MCM3AP
CHSY1
MZT2A
PSMG2
CEP76
MCF2L