ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX9730733 | THP-1
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◣ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

UBC
WDR74
STX5
PABPC4
H4C6
H1-3
H3C6
TRIT1
TAF12
EAPP
H4C3
H1-6
EXO5
YBX1
SRSF3
PRRC2A
AIF1
H3C13
H2BC18
ZFP69
SZT2
MED8
SIRT4
H4C7
H3C7
CTPS1
ERMAP
SVBP
ZMPSTE24
TMCO2
H4C15
H4C14
H3C15
H3C14
H2AC19
H2AC18
RLF
CCDC200
NFYC
PARP2
CCNB1IP1
H4C12
H4C11
H2BC14
H2AC14
CCDC30
ZMYND12
PPCS
SLC3A2
PPIE
CITED4
C6orf226
H1-2
H3C3
TMEM107
SRSF7
PARP16
CD68
EIF4A1
LOC100996842
MPDU1
NFKBIL1
DDX39B
ATP6V1G2
SMAP2
CDC20
ELOVL1
HSP90AB1
SLC35B2
H2BC15
H2AC15
EEF1A1
H4C2
H4C1
H3C1
H1-1
STAT1
CIRBP
FAM174C
H2BC21
H2AC21
H2AC20
H4C4
H2BC6
ZNF684
H3C2
H2AC4
COL9A2
RAB13
RPS27
RPLP0
GCN1
KIF2C
ATF4
ZNF669
ZBTB4
SLC35G6
POLR2A
KLF7
INO80D
H2BC4
H2AC6
IBA57
SELENOT
P4HB
MRPS18B
ATAT1
AGPAT2
RPL10A
HEXIM2
NCL
TP53BP2
MLLT11
CDC42SE1
NASP
PPP2R5D
PEX6
RPS8
KCTD18
H3C4
DESI2
H4C9
H2BC12
H2AC12
GABPB2
MAT2A
MFSD2A
H2BC8
H2AC8
RPL5
SNX19
EIF1
MCL1
SRSF10
RPS6
H2BC9
H2BC5
H1-4
SRP9
FASN
SCMH1
HMGA1
RPL12
LRSAM1
NLRX1
ACTRT3
MYNN
PPIA
H2BC3
MARCHF7
MAD2L1BP
GTPBP2
S100A13
S100A1
CHTOP
ST3GAL3
RSPH9
ZNF124
AMD1
PABPC1
PCIF1
ID1
SRSF2
MFSD11
METTL23
TMEM167B
JMJD6
HNRNPAB
NDUFAF3
IMPDH2
DALRD3
C2orf69
POLDIP3
HMGN2
P3H1
LEMD2
FAM166A
STPG3
TUBB4B
POLG2
DDX5
RFX3
H3C8
H2BC10
SMARCA4
PUF60
FOXJ3
HNRNPH1
ATAD2
RPL10
MIA3
ZC3H10
RPL41
GBA
ZC3H4
DNAJB4
RXFP4
KHDC4
SLC39A7
RXRB
RING1
HSD17B8
SFPQ
RPS3
RPL18A
PDCD6
FUS
OARD1
NFYA
RPS20
DCAF12
ZNF572
SRF
RSRP1
QSER1
ARF1
MAF1
CYC1
ELOB
GPX1
PRSS33
C19orf48
RNPEP
UNK
H3-3B
TBCC
BICRAL
HSPA1B
BZW1
RELT
SF1
ZNFX1
NOP58
H2AX
DPAGT1
HMBS
DDX19B
AARS1
RBM12B
EIF3L
ANKRD54
ZFAND3
TRAM2
ZNF691
E2F3
H1-10
NSD2
RBM14-RBM4
RBM14
SRSF6
EGR1
UHRF2
ZNF7
LOC730098
CCL27
SEPHS2
ZBED4
ZBTB37
SLC38A2
PYCR2
RBMX
GRIN2D
KDELR1
REEP4
KCNQ4
MOB1A
SEC16A
C9orf163
AHCTF1
EEF2
VPS52
RPS18
B3GALT4
PCDHGA1
TAF7
UBAP2L
C1orf43
NFKBIA
H3-2
MDM4
PNRC2
H2BC11
H2AC11
ZNF672
DENND6B
RPS2
RNF151
TBL3
SLX1B
SLX1A
BOLA2B
BOLA2
NDUFB10
RPL3L
SULT1A4
SULT1A3
RPL30
H4C13
H3C11
H2AC16
H1-5
XKR9
LACTB2
RPS11
RPL13A
KIF5B
C6orf62
CARD9
GPSM1
DENND4B
ELAC1
CALR
RAD23A
FARSA
ERLIN2
SMURF2
HYI
NSMAF
RNPEPL1
DUSP28
ANKMY1
RPS10-NUDT3
RPS10
CEBPA
LAPTM5
RNF220
H4C8
RCC1
GTF2IRD2B
MTF2
CRK
SLC34A3
RBM12
CPNE1
RNF224
RNF208
CYSRT1
NAE1
CPT2
PNP
PIP4P1
TAF15
MRPL2
KLC4
CUL7
COL11A2
ZC3H6
ZNF670
ZNF326
ACBD6
PKMYT1
TUBB
MDC1
KATNBL1
SLC16A3
CFD
ELANE
PPP1CC
TOR4A
ZNF253
ZNF627
ZFP69B
C6orf47
APOM
BAG6
TSPAN10
NPLOC4
SLC25A44
GPANK1
CSNK2B
LY6G5B
GTF2IRD2
TMEM69
GPBP1L1
MATR3
MYH9
HNRNPA2B1
CBX3
LCN12
FBXW5
C8G
RPS3A
HGH1
POLR2D
SREBF1
MROH1
PBLD
HNRNPH3
H3-3A
TAOK1
CHAMP1
MAP10
RPL32
ZNF451
SUMO2
TUBA1B
LAMTOR1
RPL11
ANAPC15
ZNF623
PSKH1
NRN1L
YWHAH
C22orf24
PPIH
LY6G6F-LY6G6D
LY6G6F
ABHD16A
TRA2B
PPP3CC
GADD45GIP1
HNRNPC
NIPAL2
ZNF517
ZNF34
RPL8
NARF
CYBC1
RDX
EIF4A2
SURF2
SURF1
RPL7A
MED22
TNRC6B
GET3
EIF3A
DDX50
TSPOAP1
CC2D1B
ZBTB22
TAPBP
DAXX
HSPA9
TOMM6
PRICKLE4
FRS3
CCDC137
PDE6G
BBC3
RPL3
SLC27A3
CLTA
HYLS1
SLC39A1
CREB3L4
RPLP1
JTB
UBE2L3
VARS1
RPS19
METTL21A
LAT
SPNS1
TARDBP
TMEM79
SMG5
LIN9
FOXP1
CCNL1
DPP8
HENMT1
SUMO3
CLK1
KRAS
ADPGK
PTMA
CDK12
MED1
PPT1
ZFP36
PLEKHG2
SMIM19
SLC20A2
SETX
MOB4
MRPS30
PXT1
KCTD20
KNTC1
SLC39A10
HNRNPUL1
DNPH1
PRDX2
JUNB
ZNF24
POLR2J3
EPN1
STXBP3
PAIP1
PSMD8
CANX
LHX9
C1orf53
ACTR2
H2BU1
H2AW
TRIM27
SLC25A11
RNF167
PFN1
ENO3
RBM8A
PEX11B
MAN2C1
CNPY3
NCOA5
SNAP47
JMJD4
SDCBP
EXOSC3
TEX30
NEK8
RPL23A
RAB34
TLCD1
PROCA1
COQ8A
SUPT20H
ZFR
SRSF5
DPYSL2
ZNF92
ZCCHC3
C20orf96
YWHAG
CAP1
PSMD14
CGAS
MTO1
H2BC17
H2AC17
H3C12
GALT
SIGMAR1
ARID3C
PCBP2
NFX1
PDLIM2
TRERF1
NPM1
TIMP3
TBL2
BOLA2-SMG1P6
AZIN1
EIF5
GATAD1
SUB1
RBBP6
MRPS18A
ITCH
CARD8
VCP
FANCG
EPC1
ZBTB44
SRSF1
USP40
PSMB8
TAP1
TAP2
PSMB9
TSSK4
MDP1
CHMP4A
ID2
CERS2
ANXA9
LYPLA1
CMAS
INTS6
ZBTB45
ZNF696
RHBDD3
EWSR1
NACA
CHMP2A
TRIM28
INTS2
ZC3H3
OGFOD2
ARL6IP4
DEGS1
RAB7A
TBC1D3H
TBC1D3G
TBC1D3I
TBC1D3D
TBC1D3L
TBC1D3B
BMP8B
TKTL1
TEX28
TGFBRAP1
C2orf49
DIDO1
ANP32E
SLFN11
HPS6
ARMH3
TNKS
MYL12A
ZNF594
NDUFV3
TIA1
PCYOX1
RPP25
KCNMB3
USP42
TPM3
TESMIN
KCP
PRCC
SLC25A3
SV2A
DPY19L4
ATP5F1A
MTMR11
SF3B4
PPIF
GTF2A1
CELF1
SMDT1
PHETA2
NAGA
EIF2S2
CDC37L1
MSRA
ABTB1
MUS81
CFL1
AFG3L2
NUDT3
LYPLAL1
BOD1L1
SHISA5
TREX1
NNT
PPP1R15B
SLC30A5
NDUFV2
TOR1AIP2
TOR1AIP1
HNRNPA3
ZNF700
STX10
IER2
ODF3L2
MADCAM1
NUP133
OVCA2
PKNOX1
PIKFYVE
BCL7B
H2BS1
CYCS
LDHA
RAB4A
VDAC2
UHMK1
USP47
SPPL2A
DCAF8
SF3A1
CCDC157
RCE1
PRPF38B
HMGB2
SNRPD1
MAK16
SDE2
ZNF200
GRB2
SCP2
KANSL1L
ECHDC2
H2AZ1
DNAJB14
GOLPH3
GRHPR
H3C10
H2BC13
H2AC13
COX18
LUC7L2
DNTTIP2
ZNF76
RPL26
KRBA2
NFU1
TXNIP
CHMP5
BAG1
MAPK1
RNPS1
NUCKS1
ZBTB11
RPL24
PRPF8
TBRG4
THEM4
SNX33
IMP3
FES
BRWD1
KRCC1
POMK
CTBP1
TRAF7
RAB26
RGS20
ATP6V1H
DNAH14
TUSC1
PAXX
CLIC3
LCNL1
PTBP1
DNAJB1
H2AC7
GTF3C6
H4C5
H2BC7
PFKL
EIF4G2
FMC1-LUC7L2
FMC1
PRRC2C
RPL36
MICOS13
HSD11B1L
UBR2
ETFRF1
CFAP94
FOXD1
CSNK1A1
ZNF93
ACSL3
RPLP2
PNPLA2
PIDD1
RC3H1
OAZ1
UQCC3
LBHD1
MBD1
CXXC1
CSKMT
C11orf98
PBX2
GPSM3
MTCH1
RBM4
RPS15
CEP192
TMEM70
ELOC
DDX59
UBAP2
MYL6B
MYL6
RPL37A
SLC25A6
CAPRIN1
HES6
TOMM20
UBE2V2
MAPK1IP1L
PPP6R3
GNAI3
GPR61
SCCPDH
EIF3E
SUSD1
NCBP3
KMT5B
CHD1L
PRKAB2
RPL36AL
MGAT2
C16orf72
LRIF1
SUPT5H
RPS16
ZWILCH
SNAPC5
RPL4
VPS72
PIP5K1A
ZNF131
CNOT1
MRPL37
CYB5RL
RPL21
MKLN1
VASP
RCC2
PPM1N
RAB5IF
BAZ2A
ATP5F1B
ETFA
DELE1
HNRNPDL
ENOPH1
CBFB
IPPK
CMPK1
NUDT18
ZNF574
RPS15A
RPL23
C5orf51
C6orf89
RBM25
GNAI2
PPIL1
HIF1A
CTNNB1
EIF2D
RPL22L1
TRIM33
RABL6
LRRC24
C8orf82
ZNF518A
GTF3C3
C2orf66
SLC38A10
RAB22A
C15orf39
IL4I1
NUP62
ATF5
SLC39A13
ZBTB6
RC3H2
NAA60
PRRG4
C9orf64
NUP54
GDI2
FBXO4
HSPA4
NSD1
RPS5
PMPCA
ENTR1
ZNF3
COPS6
ACTN1
ZNF207
C17orf75
AFF4
CBY3
SRCAP
LOC730183
DNAJC27
SUPT3H
RNF135
EEF1AKMT1
DOCK2
ARHGAP35
AP2S1
HSPA5
TPT1
RPL13
TONSL
CALM2
PGP
E4F1
HDAC4
CD19
RABEP2
VAPA
ATP6V0C
AMDHD2
KDM3B
ANKRD13D
SRPRA
TNPO1
PRKCD
PSPC1
SS18L1
PSMA7
UHRF1BP1
NRROS
GUK1
IPP
ZSCAN31
UPF1
RPL37
CARD6
GTPBP4
NUP42
CKAP2
VPS36
RRNAD1
ISG20L2
TMEM216
CFAP410
CCDC116
UBE2Z
SRD5A1
FOXK2
HNF4G
NELFCD
LZTR1
ZFAND5
TCTA
RHOA
OSBPL5
EZH2
HSPB1
TATDN2
SPI1
ZKSCAN2
DAZAP2
LUC7L3
EIF4H
SETD2
TMEM249
SLC52A2
FBXL6
PRTN3
EIF3D
ATP5F1E
GMEB1
RANBP6
KIAA2026
LSM4
TRIM11
TRIM17
DPH2
B4GALT2
ATP6V0B
ASH2L
RBMXL1
KYAT3
RPP25L
DCTN3
CYBA
POLR2E
GPX4
KLF10
NCSTN
COPA
ZNF280D
MRC2
ELOVL5
RANGAP1
UBXN1
STARD7
SLTM
CXXC5
LIG3
ZC3H7B
SCYL1
CHD2
UBXN8
TAF1D
C11orf54
GART
KIAA1586
SMC5
TCF25
BMS1
ZC3H11A
ZBED6
YY1AP1
DAP3
RPSA
STMN1
CBX5
HNRNPA1
PARN
BFAR
RACK1
ARHGEF2
UNKL
D2HGDH
TPRN
TMEM203
NDOR1
MMAA
RPL14
STT3B
SCAF8
ACAP2
PIGL
NCOR1
ENOSF1
SH3GL1
CHAF1A
PSMB10
LCAT
CTRL
PTBP3
NDUFB4
KPNA2