ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX20230572 | Ishikawa
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◣ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

CTNNB1
MTF2
CLTC
NOTCH2NLC
MRM3
GLOD4
B4GALNT3
TMEM41A
LRP6
CCDC88A
CALM3
PPP5D1
NOTCH2NLA
SOD2
WTAP
GPAM
NCBP2AS2
NCBP2
RPS2
RNF151
TBL3
NOXO1
SSNA1
ANAPC2
ZC3H6
CALM1
MRPL21
IGHMBP2
CCNL1
SEC13
MXD4
KMT5B
MRTO4
EMC1
HEXIM2
DOLPP1
PRKACA
ATAD2
BRWD1
DDIT4
PNRC2
ATG14
NXF1
ZFAND2A
HMGCL
IST1
KPNB1
PIK3IP1
NAGPA
STX18
NOTCH2
SPATC1L
TSN
LAMP1
ZNF212
RCL1
MTMR2
COQ7
TMEM222
UBQLN1
ADPGK
CYCS
EIF2D
DDX23
UBE2B
CDKL3
DIP2A
COPS8
CHD2
UBN1
GLYR1
NUP214
MCM7
AP4M1
DOHH
FZR1
LAT
SPNS1
TOB2
WASHC2C
TCF3
PEPD
TRIAP1
COX6A1
SNRNP70
CALM2
AMOTL2
TRIP12
FBXO36
VPS37A
CNOT7
ARF4
ARNTL
ZNF721
PIGG
UBE2D3
NOTCH2NLB
CYP51A1
RPS28
NDUFA7
USP42
TAF5
TSPYL2
RASEF
RERE
PKM
ENDOV
CTDP1
PHIP
CORO7-PAM16
CORO7
DNAJA3
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
MYLIP
DPP8
PNRC1
PSMD3
TMA7
CCDC51
ATRIP
HEXA
MRPS35
ZKSCAN2
ADK
COQ9
CIAPIN1
PI4K2A
MORN4
TIMM22
TMEM199
SEBOX
POLDIP2
HAGH
FAHD1
PDE6D
COPS7B
POMZP3
WDR53
FBXO45
WDR25
WARS1
ARHGEF12
KMT2D
RHEBL1
WASHC2A
TXN2
GTF2H3
EIF2B1
NOC4L
DDX51
TCF12
HOXD9
HOXD8
PINX1
HSP90AB1
SLC44A2
GHITM
CALR
RAD23A
MRPL58
SPATA25
NEURL2
CTSA
ZSWIM1
DSTYK
KDM4B
COMMD1
CCT4
CASC3
SPRYD3
CKS2
SECISBP2
RBM42
DCP1A
NMNAT1
LZIC
CFAP410
TOMM22
ZSWIM7
TTC19
NBPF1
FUS
TBCB
POLR2I
OVOL3
POLR2J3
PMPCA
ENTR1
MRPL20
CCNL2
PBLD
HNRNPH3
PRTG
PRSS22
C8orf33
MVD
TIMM21
FBXO15
SMN2
SMN1
SUMF1
RCOR1
UBC
DUS2
DPEP2NB
DDX28
CHCHD1
ZSWIM8
FUT11
ZC3H3
GET3
PEX3
ADAT2
ACSL3
SARAF
UHMK1
ADNP
PCID2
CUL4A
TTC4
MANF
RBM15B
DCAF8
MRPL4
CRBN
MARCHF8
RLF
APTX
DNAJA1
VDAC2
ECSIT
CNN1
TAOK2
STX16
ATXN2L
HDAC10
TUBGCP6
AMIGO3
GMPPB
SLC39A5
RNF41
NABP2
ZFAND4
MFN2
MAN1A2
TOB1
ABAT
USP30
SLC25A1
PACSIN3
ARFGAP2
KCNIP2
IPO11
DIMT1
TENT5C
TMEM79
SMG5
TARBP2
MAP3K12
NPFF
TMEM262
ZFPL1
CDCA5
CLCN7
YPEL2
DIABLO
DYRK1B
HMGB1
USPL1
OAZ1
SRRD
HPS4
PELP1
ARRB2
TMEM217
TBC1D22B
ACOX3
TRMT44
SRSF11
LRRC40
IER5
TIMM50
TMEM128
NDUFS7
POLR3D
MRPS15
C16orf89
ALG1
MYZAP
GCOM1
DCAF10
MYBL2
TFRC
LMTK2
NABP1
GTF3C5
H2AX
DPAGT1
HMBS
AP5Z1
CFAP43
HNRNPL
AURKAIP1
NAA80
IFRD2
HYAL3
RPS6KB2
PTPRCAP
MAPKAPK5
TMED2
PIK3R3
ID2
PHF5A
ACO2
FAM207A
FOXJ3
SMPD4
MZT2B
CDKN2AIPNL
LONP1
CATSPERD
PARL
HTRA2
DQX1
AMD1
SRSF6
FAM53C
CDC25C
TRMU
IP6K2
SPTLC1
DDX1
CMTR1
WASHC5
NSMCE2
TBCCD1
DNAJB11
MRPL37
CYB5RL
MKNK2
PSPH
CCT6A
HNRNPAB
CCDC77
KDM5A
OAZ3
MRPL9
AARS2
ZNF517
ZNF34
RPL8
FRA10AC1
TRMT61B
CDK11B
PCCB
HOXD10
TEPSIN
NDUFAF8
ATG7
UQCRC1
CABIN1
WDR43
OPA1
ULK2
PPIL4
MCU
NDUFAB1
C6orf132
SP2
HERPUD1
SESN3
ETNK1
RPL22
RNF207
PKN2
PPT1
TOP3B
ATP8B1
SPRYD4
FAM133B
MTHFD2
SNAPC3
TFDP2
YWHAQ
FAM180B
NDUFS3
KBTBD4
FAM71E1
EMC10
FBXW2
EXO5
PCIF1
ZNF148
SPRED1
RANBP2
ZER1
SPOUT1
FBF1
GCHFR
RMDN3
VCL
MRPS11
MRPL46
CNP
GOLGA1
PSMD8
MED9
NDUFV1
RRP7A
DYNLL1
THAP9
SEC31A
PLEKHM3
TAF15
PPP1CA
RAD9A
PHAX
ALDH7A1
WSB1
NLK
DBNDD2
GSTO2
NSFL1C
TEDC1
CRIP1
ANKFY1
BECN1
PSME3
UBOX5
FASTKD5
DNAJB12
CLP1
ZDHHC5
CDKN2C
CAPN10
FAF1
TIGAR
EIF4A2
CCDC43
PLEKHN1
KLHL17
NOC2L
SCGB1C2
ZNRD2
FAM89B
EHBP1L1
MSTO1
RPS5
C4B_2
C4B
STK19
LOC110384692
DXO
C4A
ORMDL3
GSDMB
RCOR3
FBXO24
LRCH4
AJUBA
TMEM88
TDRD9
ATP5MPL
TNKS
KDM6B
PA2G4
TULP3
TEKT2
ADPRS
XPO4
VPS33A
RFXANK
BORCS8
CACTIN
MON2
RPL13
LANCL2
SLC9A3R1
TAGLN2
UBALD2
KRT80
TDRKH
ASNS
PSTK
NUDT15
PTP4A1
EIF3F
TMEM104
NAT9
TBRG4
SRPRA
GIPC1
ANXA7
FEM1C
DDX50
ZNF594
GRHL2
TIMM44
GARS1
PIGU
GTF2IRD2B
HDAC4
POLG
SRP68
ZACN
GALR2
MICU2
RPLP1
KLHL12
PEX26
PSMF1
PTEN
KLLN
ZNF839
PLK2
DIP2B
CCT2
EDF1
CBWD2
SLC7A6OS
PRMT7
ATAD3A
TMPO
SUPV3L1
YIF1A
TMEM151A
KPTN
SIVA1
ZNF789
ATP5MF-PTCD1
ATP5MF
GLRX3
RRBP1
NUP160
WDHD1
SOCS4
FAM156A
FAM156B
CANT1
LDHA
GATAD2A
H1-10
DCPS
LTO1
RAB4B
MIA
VCP
FANCG
CCDC34
WASF2
RPL6
PTPN11
TPRN
TMEM203
NDOR1
DNAJB1
NUP188
DOLK
MAD1L1
NUDT1
MRM2
TECR
C16orf70
NDUFB8
HIF1AN
LRRC59
TSR1
SGSM2
NAGK
RAD50
RUSC2
ZBTB45
SLC27A5
METTL9
GABPB1
CCDC134
SURF6
VAMP1
DCAF1
PDCD4
NCL
GID4
ATPAF2
CNBP
PALB2
DCTN5
FAM204A
SFR1
EPHB3
RPUSD4
FAM118B
EXOSC8
ALG5
RTF2
SLC25A28
RPLP0
GCN1
VCPKMT
THOC3
LIPA
ACAD9
DDX46
SETD1A
ORAI3
TOP2B
DEXI
CLEC16A
C5orf51
RFX3
GABARAP
ELP5
CTDNEP1
CLDN7
NCOA4
NOL7
ASH2L
FEM1A
PARPBP
NUP37
SLC25A38
GNB2
ATP9B
MSMO1
SRSF5
ZFP1
UNK
H3-3B
LUC7L
FAM234A
NARF
CYBC1
CDH1
SLC35B1
CZIB
FAM161B
COQ6
EEF2
THUMPD1
SMIM13
MEF2D
POLR3E
TIGD6
HMGXB3
ZNF337
KHDRBS1
CUTC
COX15
AGAP3
TMUB1
FASTK
BOD1L1
BLOC1S2
ZC3H10
RPL41
ESYT1
RNPS1
SMIM41
ATG101
NRL
PCK2
LZTR1
ARHGEF7
WDR18
ATAD3B
RNMT
FAM210A
RNASEH1
DOK7
PGS1
EPRS1
ZW10
CLDN25
TJAP1
RPL18A
TSR2
LRRC57
HAUS2
FANCD2
PSMD6
EIF1
MOB3A
IZUMO4
CLIC4
TUBGCP5
TEFM
UBIAD1
SUCO
VAMP2
PER1
MARK3
PPP2R3B
FDFT1
U2AF1L5
U2AF1
SART1
GTF2I
POR
MTG1
TMEM42
PDK2
STARD7
PGP
E4F1
MLST8
BRICD5
HAUS5
TRAF2
DENR
R3HDM2
INHBC
SH3GL2
PTPN4
REXO1
VWA3B
CAPZA2
MRPS7
MIF4GD
GGA3
MCCC1
RPSA
WDR6
JPT1
PCNX4
CEP55
HGS
ARL16
C10orf143
CEP350
STX6
PUF60
PFDN2
NIT1
DPP9
GPS2
EIF5A
KLHL18
KIF9
RANBP3
LGMN
CCDC130
HDAC6
ZBTB20
UBA52
RUBCN
ZGPAT
ARFRP1
H2BC21
H2AC21
H2AC20
PSMD7
TK1
DCP1B
PACSIN2
RAB5IF
WDR81
TLCD2
C19orf48
YY1AP1
DAP3
IER5L
P2RY11
PPAN-P2RY11
PPAN
ANGPTL6
RPAP3
SH3GLB2
MIGA2
KCTD5
OGDH
RAB8A
ASB6
UMPS
MAML3
RBM18
MRRF
GADD45G
NOCT
KLF10
RPL3
MRPS5
TAX1BP3
EMC6
PSMC5
FTSJ3
KCTD9
CDCA2
HBS1L
MDM4
THOC1
TFB2M
CNST
HPS5
GTF2H1
HMGCS1
PAK4
ATF4
EXOSC3
BRAP
ACAD10
COQ10A
ANKRD52
ASAH1
SMAGP
MICOS10-NBL1
MICOS10
ALKBH3
COQ8A
SPC24
ZFAND5
OSCAR
NDUFA3
STIP1
PSMD12
CDK5RAP1
RASSF1
TUSC2
HYAL2
LNPK
CENPH
ZBTB8OS
RBBP4
FPGS
SNX13
ASH1L
SEC11A
THAP7
SFSWAP
EIF5
HNRNPM
ASL
IL4I1
NUP62
ATF5
PPP4R3A
PRRC2A
AIF1
TMEM95
KCTD11
TMEM109
PRPF19
FARSA
ABRAXAS2
EEF1AKMT2
TIPARP
SUN3
C7orf57
SRSF1
SMIM10L1
PRH1-TAS2R14
SLC25A42
INO80
SYMPK
FOXA3
RAVER1
ICAM3
ZNF740
CSAD
NEK9
TRDMT1
NFATC4
ZNF326
YEATS4
CREM
RHNO1
FOXM1
STYXL1
SCGB1C1
ODF3
MAK16
RBL1
PTPN6
C12orf57
ATN1
TSNAXIP1
RANBP10
UNC50
COA5
SLC25A26
MKS1
TSR3
GNPTG
ZNF574
GRIK5
DOK3
DDX41
PLAG1
CHCHD7
RPP38
ACBD7
RUVBL1
EEFSEC
RPS3
STAT1
RPAIN
NUP88
UNC45B
NLE1
RBM4B
COG2
PCNA
TMEM230
NOL10
THBS1
IQCH
AAGAB
IDI1
WDR37
LRCH3
MRPS16
DNAJC9
CBWD5
CBWD3
RPS15
KCTD7
CBWD6
NELFA
TRA2B
PLCXD2
RNF141
SLC25A16
GXYLT1
EXT1
CEP20
FAM76B
CEP57
SHBG
FXR2
SF3B2
GAL3ST3
MRPL39
GLG1
RMI1
HNRNPK
WFDC3
DNTTIP1
ASF1B
MCF2L
MZT2A
EIF4A3
RPL35
ARPC5L
WDR38
MVK
TEDDM1
GLUL
ZNF75A
TIGD7
CCDC91
CEP131
OR6B2
NDUFA10
NUP93
ZNF775
TRMT2A
RANBP1
VPS26C
CHPF2
ABCF2
TRPC4AP
PPIA
UQCC3
LBHD1
UBXN1
MALSU1
CRY2
E2F6
PPRC1
LOC101928764
SLC34A2
WBP1
INO80B
MOGS
IARS1
NOM1
ING5
BCKDHB
ZNF865
ZNF524
FIZ1
EEF1E1
ZFHX2
THTPA
BRIX1
RNASEH2C
KAT5
TECPR1
SERTAD1
PRX
THRAP3
RARS2
ORC3
USP21
UFC1
PPOX
VAC14
TUBGCP3
YIPF6
SDE2