ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX6066503 | HCT 116
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◣ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

DUX4
FRG2C
ART1
FRG2
GSTA4
LOC102724770
DGCR6
MTRNR2L1
KMT2A
KMT5B
EID3
COL23A1
ID1
IER3
FLOT1
HMGA2
INO80D
ITPRID2
TRIB1
EAPP
PHLDA1
WDR74
STX5
KIZ
MAMDC2
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
SIRT4
NDUFS7
CCDC200
KITLG
MYC
IRAG1
TAF12
DCBLD2
PHRF1
ANKRD40
SOCS6
H1-2
DUSP6
PAM
PARP16
MTRNR2L8
EIF4A2
SLC38A2
H4C15
H4C14
H3C15
H3C14
H2AC19
H2AC18
EREG
BMP4
TCF7L2
L3MBTL3
BRWD1
PDP1
MUC3A
DDX23
UNK
H3-3B
MTF2
NAA80
IFRD2
HYAL3
HEXIM2
RPS2
RNF151
LAMP1
CCNL1
TBL3
CTNNB1
FEM1A
ZC3H6
CLTC
DSTYK
NOXO1
PDE6D
COPS7B
CALR3
C19orf44
CHPF2
ABCF2
EIF2D
NOTCH2NLC
STX18
TIMM21
FBXO15
TMEM41A
NCBP2AS2
NCBP2
LAT
CALCOCO1
MRPL21
IGHMBP2
UCKL1
CKS2
SECISBP2
SPNS1
TSNAXIP1
UBC
RANBP10
ATAD2
CALM3
PPRC1
DCP1A
PPP5D1
PAFAH2
SOD2
GSPT1
TMEM199
SEBOX
POLDIP2
POLR2J3
NPRL2
WDR53
FBXO45
HMGB1
TMEM115
CYB561D2
WTAP
HDGF
GTF3C5
NOTCH2NLA
TMEM222
SPATC1L
GATB
ARHGAP35
AP2S1
CALM1
FOXJ3
RASSF1
CLPB
HEXA
OPA1
SSNA1
ANAPC2
DOHH
RBL1
CALR
SLC39A1
CREB3L4
TSN
CCDC88A
TOMM22
MRM3
GLOD4
SEC13
ZSCAN22
CYCS
UNKL
ORMDL3
GSDMB
MRTO4
EMC1
TCF3
LRP6
TIMM22
NOTCH2
AURKAIP1
NMNAT1
LZIC
CALM2
ZNF517
ZNF34
RPL8
COPS8
FZR1
KBTBD7
NOP14
GRK4
UBB
GPBAR1
BTRC
NUP214
CNOT1
PEMT
C16orf91
SMN2
SMN1
CCDC77
TRIP4
PCLAF
NDUFS3
KBTBD4
FAM180B
B4GALNT3
STX16
CRTC2
ST3GAL2
TNFAIP8L2
KMT2D
TESK2
MMACHC
CCDC163
CFAP410
SCAF1
RRAS
CHMP4B
MED23
ENPP3
SYMPK
FOXA3
CTDP1
ZNF337
POMZP3
RHEBL1
BOD1
IPO11
DIMT1
KPNB1
TMEM262
RPS3
MRPL24
PHB
PSMD3
ZNF513
PNKD
AMD1
SNX17
EIF2B4
AHCYL2
PRCC
TSSC4
WASHC2C
AAMP
RPS20
IST1
TCEA2
ZBTB45
ING3
PEX3
ADAT2
DDIT4
PA2G4
DEXI
CLEC16A
HTRA2
DQX1
UBE2B
CDKL3
TOB2
RPL36
MICOS13
HSD11B1L
RAD23A
ADPGK
ZNF212
GTF2H3
EIF2B1
ZFAND2A
SMPD3
PHIP
THRAP3
WASHC2A
ZMYND10
PEX26
UBE2T
PPP1R12B
DYRK1B
NAGPA
KCTD9
CDCA2
KBTBD6
RPL22
RNF207
RPS6KB2
MAF1
CYC1
PTPRCAP
TTC13
RPL18A
TSC1
GFI1B
NUDCD1
FRA10AC1
PERCC1
MED15
ZNF789
ATP5MF-PTCD1
ATP5MF
VARS2
GTF2H4
HIKESHI
ARHGEF12
TRIAP1
COX6A1
PARL
OSCAR
NDUFA3
PKM
ZNF721
PIGG
H2AX
DPAGT1
USP30
ZCCHC4
MCM7
AP4M1
NUF2
UBE2D3
NOTCH2NLB
SCNM1
LYSMD1
NXF1
KDM5A
RPS28
NDUFA7
H2BC21
H2AC21
H2AC20
OAZ3
MRPL9
ATG14
ZKSCAN2
INVS
ERP44
FAM207A
TMEM127
CIAO1
TMOD4
SLC27A5
MAD2L1BP
GTPBP2
USPL1
KCTD5
WDR97
PNRC2
RPIA
MRPL20
CCNL2
PANK4
HES5
SCRIB
C8orf33
ZNF444
FAM53C
CDC25C
TMTC3
CEP290
PPP1R12C
WDPCP
MDH1
RNASEH2C
KAT5
RPS26
GABARAP
TNFAIP1
IFT20
TRAPPC3
MAP7D1
TMEM79
SMG5
GPAM
DNAJC11
RANGAP1
FUS
DUS2
DPEP2NB
DDX28
PTPN6
C12orf57
DIP2A
CLP1
ZW10
CLDN25
CYP51A1
KDM4B
SLC35B4
MRPS15
MXD4
UBR2
FARSA
INTS9
HMBOX1
ATXN2L
C1orf159
MAPKAPK5
BRIX1
CORO7-PAM16
CORO7
MFN2
ZNF384
DNAJA3
RBM42
MRPS16
DNAJC9
SRSF11
ADNP
TMEM208
LRRC29
ZC3H10
RPL41
ZNF56
CCAR2
C8orf58
NUP153
PEX14
PGBD4
EMC7
KAT7
UBQLN1
WBP1
PCID2
CUL4A
DFFA
TBRG4
RLF
BANP
ALKBH3
C6orf47
APOM
INO80B
ABRAXAS2
PSMD11
RPS5
SLC25A19
EEF1AKMT2
PINX1
MRPS35
SV2A
CHD2
UBE2Q1
CHRNB2
BOD1L1
SCGB1C2
UBQLN4
LAMTOR2
NKIRAS1
MRI1
C19orf53
MDM4
COMMD1
VCP
FANCG
HMGCL
DPP8
NMT1
DCAKD
CCT4
H4C12
GHITM
PSMF1
CCDC146
NSFL1C
ZFYVE1
FBXW11
GID4
ATPAF2
NME1-NME2
NME1
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
DPP9
TAF5
TMEM70
ELOC
CLDN6
AP2M1
PBLD
HNRNPH3
RIC8B
STK25
LRRC40
SPRYD4
TRIP12
NOC4L
FBXO36
DDX51
RBM15B
MANF
LUC7L
FAM234A
CDKN2C
TOR1AIP2
TOR1AIP1
TMEM88
RPL15
ZGPAT
ARFRP1
SCGB1C1
ODF3
SLC33A1
SPATA25
NEURL2
VPS37A
CNOT7
RPLP0
GCN1
TTC33
PHF23
DVL2
UCHL5
RO60
ENDOV
DOLPP1
AHCTF1
ZNF420
CIC
ZFYVE19
DNAJC17
PIGU
PRR5L
CTSA
ZSWIM1
TEPSIN
NDUFAF8
NTAN1
RBM6
FBF1
SP2
CSRNP2
SPTLC1
HNRNPAB
COMMD9
SUPT5H
RPS16
STAU1
ACOX3
CHCHD1
IDH3B
LETM1
DNAJB12
PHF12
PYCR3
GFUS
CRBN
SUFU
ACTR1A
RCL1
CCP110
TCF12
SMARCAL1
RPL29
SEPTIN9
CANT1
EIF3F
MRPL58
LONP1
CATSPERD
TFPT
PRPF31
MON1A
RALBP1
BIRC5
HSP90AB1
DCAF10
PHF13
H2BC5
H1-4
TRMT44
HMBS
UBL7
PIK3R3
SUPV3L1
MTMR2
H4C11
HSP90B1
NDUFV1
GTF2I
ARF4
SNAPC3
TSC2
NTHL1
CTU1
ZFPL1
CDCA5
PKLR
FDPS
COQ9
CIAPIN1
TMA7
CCDC51
ATRIP
DDX49
COPE
DNM1L
MARS1
ARHGAP9
JOSD2
ASPDH
COG2
P2RY11
ZNF749
SART1
ZSWIM8
EMILIN1
HSPA5
SNX1
CIAO2A
TRAF7
RAB26
SSBP1
RCOR1
SNRNP70
RAB5C
TMEM59
FAM166A
BOLA1
RPL12
LRSAM1
DCAF8
MYBL2
DCAF1
WASHC5
NSMCE2
RWDD1
DDX1
MTRNR2L2
MSH3
DHFR
RPS7
WAPL
DESI2
CAND1
TNFRSF12A
THOC6
HCFC1R1
TMEM242
METTL9
MRPL39
OST4
STPG3
CHCHD3
SF3A3
TRAK2
STRADB
B3GALNT2
IP6K2
PRSS22
GABPB1
SOX6
C11orf58
PNRC1
VCPIP1
C8orf44-SGK3
TOP3B
TLE3
ODF3L2
MADCAM1
PCNA
COX7C
TMEM230
CD68
SLC7A6OS
PRMT7
ESYT1
PIK3IP1
CCDC59
METTL23
POLG
BICD2
FBXL12
NLK
WDR87
SIPA1L3
ZFYVE28
FBXO46
POLG2
DDX5
MCU
SRSF2
MFSD11
TTC4
CFAP99
PSMD2
TRMT61B
TMED9
BCKDK
B4GALT7
ZNF500
SLC3A2
USP48
TEKT2
ADPRS
PRKACA
FAM228B
POLR2E
PABPC1
NEK8
PTEN
KLLN
GPX4
ATF4
THYN1
BECN1
ACAD8
SLC24A1
INTS14
H3C13
H2BC18
SIRT2
NFKBIB
IPPK
SRSF1
PIH1D1
ALDH16A1
SKIV2L
NELFE
PSME3
SMIM13
PSMD4
SSR3
UBE3B
SERBP1
BRF2
CAPN10
TARBP2
MAP3K12
FAM149B1
ECD
ZNF148
GTF2H2C_2
PLEKHM3
TIMM13
GFM1
SLC4A2
CDK5
NDUFB5
MRPL47
CCDC90B
RPLP1
MUS81
CFL1
ZC3H3
RPS19
CMTR1
ASIC3
MYLK4
KAT8
NPFF
CTF1
BCL7C
SRRD
HPS4
NOP53
TMEM217
TBC1D22B
COQ7
TRUB1
VIRMA
RUVBL1
COPS7A
NOLC1
LARS1
UBA52
SLX1B
SLX1A
BOLA2B
BOLA2
SESN1
DPY19L4
COA6
HAGH
FAHD1
EIF4A1
STAT1
ASXL1
RFXANK
BORCS8
CFAP20
CDKN2AIPNL
KDM4A
TFRC
PPAN-P2RY11
PPAN
ANGPTL6
SPRED1
BUB3
FAF1
H2BC15
H2AC15
PCBP2
SF3B2
GAL3ST3
WNK1
NDUFB10
RPL23A
REXO1
PARK7
RAB34
YPEL4
TLCD1
RAB13
CACTIN
WBP2
HMX2
SRP68
NDUFAB1
ACTRT3
PTDSS2
ANO9
BUB1B
GTF2H2C
WRNIP1
EEF2
RPL3L
KPTN
TACO1
SHC1
H2BC14
H2AC14
KMT2B
XRRA1
SPCS2
ZER1
RCOR3
ZNF225
PHB2
ZACN
GALR2
RANBP2
SULT1A4
SULT1A3
PHAX
ALDH7A1
ZNF518A
GPANK1
EMP3
CSNK2B
CCDC114
NDUFB8
HIF1AN
XPOT
PI4K2A
MORN4
TMEM109
PRPF19
KHK
EEF1A1
TIGD6
HMGXB3
PALB2
DCTN5
CWC25
BMS1
MRPS11
MRPL46
TSFM
EEF1AKMT3
USP15
WDR25
WARS1
PROCA1
CCDC150
ZNF189
MRPL50
SMIM12
UBN1
GLYR1
SUMF1
CEP350
C5orf51
SEC11C
RERE
RPP30
MEIOSIN
EIF2S2
OAZ1
RPL3
ACSL3
TDG
C12orf73
PTBP1
NOL10
ZNF140
ZNF514
ZNF2
CHCHD6
DBNDD2
RTF2
SNRPD3
GUCD1
FASTKD1
FBXO24
NDUFS2
ADAMTS4
SPHK2
RPL18
FAM83E
VPS33A
CDK8
PNKP
AKT1S1
SUGP1
SELENOH
MAU2
C19orf48
L3MBTL2
SCRT1
DGAT1
CCNT2
SEC61A1
C12orf43
TATDN3
NSL1
ZWILCH
SNAPC5
RPL4
TRMU
LRCH4
WDR4
RAB1A
POLR3D
NCDN
KIAA0319L
CCDC124
ZNF451
TEFM
MRPL3
FAM156A
TMEM69
GPBP1L1
SLC25A10
MRPL12
ZNF527
PANK3
INTS1
FAM156B
GPR15
CLDND1
PEPD
HIRIP3
CNPY2
CAPN15
CNIH4
PPIA
TOP3A
SMCR8
PPP6C
SFSWAP
MRPL48
GSC2
RTTN
UBAC1
GET3
TOP2B
NABP1
IPO7
COMMD2
ZNF133
TBC1D17
RPS3A
TTBK1
CNOT4
AKIRIN2
SCAMP4
ADAT3
DBP
ZNF805
AURKC
CCDC86
AP5Z1
FANCD2
HNRNPL
EIF1
PCNP
RPL6
PTPN11
MRPS23
ATP5PO
SRPRA
SPRYD3
RASEF
SCAMP3
FAM189B
CA11
TOR1A
MOGS
SNAP47
JMJD4
TP53I3
SF3B6
USP35
KCTD21
STMN3
RTEL1
DDX46
MRPL55
TIMM50
ZNF335
LRFN3
FUT11
SDE2
BOLA2-SMG1P6
ZBTB4
SLC35G6
POLR2A
MAGOH
PKN2
SEL1L
PRR22
DUS3L