ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3408661 | KELLY
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◣ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

MTRNR2L2
MSH3
DHFR
MTRNR2L1
MTRNR2L8
DUX4
MAMDC2
CCDC200
SP2
FRG2C
WDR74
STX5
SPATC1L
LOC102724770
DGCR6
EAPP
KIF5C
H4C15
H4C14
H3C15
H3C14
H2AC19
H2AC18
H4C12
H4C11
H2BC15
H2AC15
H4C9
H2BC11
H2AC11
H4C3
H1-6
H2BC21
H2AC21
H2AC20
HIBADH
H3C13
H2BC18
SHC1
FLAD1
CKS1B
UNK
H3-3B
FRG2
DDX17
TAF12
H3C6
H2BC8
H2AC8
RFX1
H2BC14
H2AC14
H3C10
H2BC13
H2AC13
POLDIP3
PARP16
PTPN6
C12orf57
H2BC12
H2AC12
RBPMS
ART1
H4C4
H3C4
H2BC6
ATAD3A
H2BC17
H2AC17
H3C12
EGR1
H2BU1
H2AW
H2BC4
H2AC6
NUCKS1
PKNOX1
RNF187
TMEM160
TLE3
TMEM107
SIRT4
BAZ1B
CYB561
H1-2
RPL32
CYRIA
ZNF365
RHNO1
FOXM1
DDX23
MTF2
NAA80
IFRD2
HYAL3
HEXIM2
LAMP1
RPS2
RNF151
CCNL1
KMT5B
CTNNB1
TBL3
CLTC
ZC3H6
FEM1A
DSTYK
PDE6D
COPS7B
NOXO1
EIF2D
CHPF2
ABCF2
CALR3
C19orf44
NOTCH2NLC
STX18
TMEM41A
TIMM21
FBXO15
BRWD1
UBC
NCBP2AS2
NCBP2
MRPL21
IGHMBP2
LAT
CALCOCO1
DCP1A
UCKL1
CKS2
SECISBP2
ATAD2
SPNS1
TSNAXIP1
PAFAH2
RANBP10
CALM3
PPRC1
PPP5D1
SOD2
GSPT1
TMEM199
SEBOX
POLDIP2
POLR2J3
NPRL2
HMGB1
WTAP
HDGF
WDR53
FBXO45
NOTCH2NLA
TMEM222
TMEM115
CYB561D2
GTF3C5
CALM1
GATB
ARHGAP35
AP2S1
FOXJ3
RASSF1
NDUFS7
CLPB
OPA1
CALR
HEXA
SSNA1
ANAPC2
RBL1
TSN
CCDC88A
SEC13
DOHH
TOMM22
SLC39A1
CREB3L4
CALM2
LRP6
MRM3
GLOD4
AURKAIP1
ZSCAN22
NMNAT1
LZIC
CYCS
UNKL
ORMDL3
GSDMB
NOTCH2
MRTO4
EMC1
TCF3
TIMM22
FAM180B
STX16
NDUFS3
KBTBD4
ZNF517
ZNF34
RPL8
COPS8
FZR1
TRIP4
PCLAF
KBTBD7
NOP14
GRK4
CCDC77
UBB
GPBAR1
BTRC
TNFAIP8L2
NUP214
SMN2
SMN1
CNOT1
KMT2D
PEMT
C16orf91
TMEM262
MED23
ENPP3
B4GALNT3
CRTC2
ST3GAL2
CFAP410
TESK2
MMACHC
CCDC163
KPNB1
RHEBL1
POMZP3
SCAF1
RRAS
CHMP4B
SYMPK
FOXA3
CTDP1
ZNF337
MRPL24
BOD1
IPO11
DIMT1
RPS3
SNX17
GSTA4
ZNF513
EIF2B4
PHB
PSMD3
PNKD
AMD1
TSSC4
IST1
ZBTB45
AHCYL2
PEX3
ADAT2
PRCC
RPS20
WASHC2C
AAMP
TOB2
TCEA2
DDIT4
RAD23A
ING3
HTRA2
DQX1
TSC1
GFI1B
PA2G4
FRA10AC1
UBE2B
CDKL3
GTF2H3
EIF2B1
DEXI
CLEC16A
PHIP
RPL36
MICOS13
HSD11B1L
ADPGK
ZNF212
MAF1
CYC1
ZFAND2A
SMPD3
THRAP3
NUF2
WASHC2A
ZMYND10
ARHGEF12
PEX26
UBE2T
PPP1R12B
DYRK1B
NAGPA
EIF4A2
RPL18A
KCTD9
CDCA2
KBTBD6
RPL22
RNF207
PKM
RPS6KB2
PTPRCAP
USP30
TTC13
SCNM1
LYSMD1
ZNF789
ATP5MF-PTCD1
ATP5MF
VARS2
GTF2H4
NUDCD1
H2AX
DPAGT1
FAM207A
PERCC1
MED15
ZCCHC4
HIKESHI
NOTCH2NLB
KDM5A
SLC27A5
ZKSCAN2
TRIAP1
COX6A1
PARL
OSCAR
NDUFA3
ZNF721
PIGG
NXF1
UBE2D3
TMOD4
MCM7
AP4M1
OAZ3
MRPL9
RPS28
NDUFA7
WDR97
ATG14
INVS
ERP44
TMEM127
CIAO1
MAD2L1BP
GTPBP2
USPL1
PNRC2
KCTD5
SCRIB
RPIA
FAM53C
CDC25C
MRPL20
CCNL2
PANK4
HES5
C8orf33
ZNF444
WDPCP
MDH1
TMTC3
CEP290
RPS26
C1orf159
PPP1R12C
RNASEH2C
KAT5
DNAJC11
FUS
GABARAP
KDM4B
TNFAIP1
IFT20
TRAPPC3
MAP7D1
TMEM79
SMG5
GPAM
DIP2A
RANGAP1
DUS2
DPEP2NB
DDX28
ZNF384
FARSA
CCAR2
C8orf58
CLP1
MRPS15
ZW10
CLDN25
CYP51A1
BRIX1
SLC35B4
MAPKAPK5
MFN2
MXD4
UBR2
MRPS16
DNAJC9
INTS9
HMBOX1
ATXN2L
CORO7-PAM16
CORO7
NME1-NME2
NME1
DNAJA3
RBM42
SRSF11
ZC3H10
RPL41
ADNP
TMEM208
LRRC29
ZNF56
NUP153
UBQLN1
PEX14
SCGB1C2
RPS5
PGBD4
EMC7
PCID2
CUL4A
TBRG4
ALKBH3
BANP
KAT7
RLF
MDM4
C6orf47
APOM
WBP1
PSMF1
DFFA
CHD2
BOD1L1
INO80B
ABRAXAS2
VCP
FANCG
PSMD11
COMMD1
MANF
SLC25A19
EEF1AKMT2
PINX1
MRPS35
SV2A
NSFL1C
NKIRAS1
UBE2Q1
CHRNB2
UBQLN4
LAMTOR2
CCT4
TOR1AIP2
TOR1AIP1
MRI1
C19orf53
HMGCL
DPP8
NMT1
DCAKD
RBM15B
GHITM
STK25
CCDC146
ZFYVE1
TAF5
FBXW11
GID4
ATPAF2
PBLD
HNRNPH3
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
TRIP12
FBXO36
DPP9
TMEM70
ELOC
CLDN6
DCAF10
AP2M1
RIC8B
PRR5L
LRRC40
SPRYD4
NOC4L
DDX51
TEPSIN
NDUFAF8
SLC33A1
LUC7L
FAM234A
VPS37A
CNOT7
CDKN2C
TMEM88
RPL15
ZGPAT
ARFRP1
SCGB1C1
ODF3
SPATA25
NEURL2
RPLP0
GCN1
TTC33
SEPTIN9
PHF23
DVL2
UCHL5
RO60
ENDOV
DOLPP1
AHCTF1
ZNF420
CIC
ZFYVE19
DNAJC17
PIGU
CTSA
HNRNPAB
ZSWIM1
EIF3F
NTAN1
PYCR3
GFUS
RBM6
FBF1
RPL29
CSRNP2
SPTLC1
MRPL58
CHCHD1
SUPT5H
RPS16
TCF12
COMMD9
CRBN
H2BC5
H1-4
LETM1
STAU1
ACOX3
EMILIN1
IDH3B
DNAJB12
PHF12
SUFU
ACTR1A
HMBS
RCL1
CCP110
SMARCAL1
CANT1
LONP1
CATSPERD
TFPT
PRPF31
MTMR2
FAM166A
MON1A
RALBP1
BIRC5
HSP90AB1
PHF13
SSBP1
TRMT44
UBL7
PIK3R3
SNAPC3
SUPV3L1
ARF4
HSP90B1
TRAF7
NDUFV1
GTF2I
OST4
TSC2
NTHL1
CTU1
ZFPL1
CDCA5
PKLR
FDPS
COQ9
CIAPIN1
STPG3
TMA7
CCDC51
ATRIP
DDX49
COPE
DNM1L
MARS1
ARHGAP9
JOSD2
ASPDH
HSPA5
RPS7
DDX1
COG2
SF3A3
TMEM242
P2RY11
ZNF749
GABPB1
SART1
ODF3L2
MADCAM1
ZSWIM8
SNRNP70
RCOR1
DCAF8
RPL12
LRSAM1
SNX1
CIAO2A
TOP3B
RAB26
RAB5C
TMEM59
MRPL39
BOLA1
TMED9
B4GALT7
MYBL2
DCAF1
WASHC5
NSMCE2
PNRC1
DESI2
RWDD1
PRSS22
WAPL
ZFYVE28
METTL9
CAND1
TNFRSF12A
THOC6
HCFC1R1
CFAP99
CHCHD3
TRAK2
STRADB
B3GALNT2
IP6K2
CD68
SOX6
C11orf58
PCNA
TMEM230
POLR2E
VCPIP1
C8orf44-SGK3
SRSF2
MFSD11
COX7C
POLG
SLC24A1
INTS14
SLC7A6OS
PRMT7
ESYT1
PIK3IP1
GTF2H2C_2
GPX4
CCDC59
TTC4
METTL23
BICD2
ATF4
POLG2
DDX5
FAM228B
PTEN
KLLN
FBXL12
NLK
WDR87
SIPA1L3
FBXO46
TEKT2
ADPRS
IPPK
DPY19L4
MCU
SLC3A2
PSMD2
TRMT61B
BCKDK
ZNF500
USP48
SKIV2L
NELFE
PRKACA
RPS19
PABPC1
BRF2
NEK8
SRSF1
THYN1
BECN1
ACAD8
PLEKHM3
SIRT2
NFKBIB
PIH1D1
ALDH16A1
PSME3
SMIM13
PSMD4
SSR3
UBE3B
RPLP1
STAT1
SERBP1
CAPN10
MUS81
CFL1
TARBP2
MAP3K12
FAM149B1
ECD
GTF2H2C
ZNF148
TIMM13
TACO1
GFM1
SLC4A2
CDK5
NDUFB5
MRPL47
CCDC90B
ZC3H3
RCOR3
CMTR1
ASIC3
MYLK4
KAT8
SRRD
HPS4
VIRMA
ZER1
TFRC
NPFF
CTF1
BCL7C
SLX1B
SLX1A
BOLA2B
BOLA2
RUVBL1
NOP53
TMEM217
TBC1D22B
COQ7
ASXL1
TRUB1
COA6
COPS7A
NOLC1
LARS1
UBA52
EIF4A1
RFXANK
BORCS8
SESN1
BMS1
CDKN2AIPNL
HAGH
FAHD1
PCBP2
CFAP20
KDM4A
KHK
PPAN-P2RY11
PPAN
ANGPTL6
SRP68
REXO1
SPRED1
ACTRT3
BUB3
FAF1
KPTN
NDUFB8
HIF1AN
PHB2
CACTIN
SF3B2
GAL3ST3
EEF1A1
EEF2
WNK1
NDUFB10
RPL23A
USP15
PARK7
RAB34
YPEL4
TLCD1
RAB13
XRRA1
SPCS2
WBP2
HMX2
NDUFAB1
PTDSS2
ANO9
BUB1B
WRNIP1
ZNF518A
RPL3L
ZACN
GALR2
KMT2B
FBXO24
PHAX
EMP3
CCDC114
ALDH7A1
GPANK1
CSNK2B
ZNF225
TMEM109
PRPF19
RANBP2
SULT1A4
SULT1A3
LRCH4
CWC25
XPOT
PI4K2A
MORN4
SMIM12
TIGD6
HMGXB3
PALB2
DCTN5
TATDN3
NSL1
MRPS11
MRPL46
PTBP1
TSFM
EEF1AKMT3
EIF2S2
SELENOH
CEP350
WDR25
WARS1
PROCA1
CCDC150
ZNF189
MRPL50
OAZ1
SNRPD3
RPL3
GUCD1
UBN1
GLYR1
SUMF1
TEFM
C5orf51
SEC11C
RERE
RPP30
NDUFS2
ADAMTS4
MEIOSIN
NABP1
POLR3D
ACSL3
TDG
C12orf73
C19orf48
SCRT1
DGAT1
NOL10
ZNF140
ZNF514
ZNF2
CHCHD6
DBNDD2
RTF2
SEC61A1
FASTKD1
ZWILCH
SNAPC5
RPL4
TRMU
SPHK2
RPL18
FAM83E
VPS33A
CDK8
RAB1A
PNKP
AKT1S1
SUGP1
MAU2
INTS1
L3MBTL2
MRPL3
CCNT2
C12orf43
WDR4
NCDN
KIAA0319L
CCDC124
ZNF451
FAM156A
TMEM69
GPBP1L1
CASC3
PPIA
SLC25A10
MRPL12
GPAA1
EXOSC4
CAPN15
UBAC1
ZNF527
PANK3
FAM156B
SDE2
MRPL48
EIF1
GPR15
CLDND1
PEPD
HIRIP3
RTTN
CNPY2
GET3
IPO7
COMMD2
CNIH4
TOP3A
SMCR8
PPP6C
ZNF805
AURKC
SFSWAP
RAD54L2
RPS3A
ZBTB4
SLC35G6
POLR2A
SNAP47
JMJD4
GSC2
TOP2B
RPL6
PTPN11
ZNF133
TBC1D17
STMN3
RTEL1
TTBK1
CNOT4
TP53I3
SF3B6
AKIRIN2
SCAMP4
ADAT3
DBP
CCDC86
AP5Z1
RASEF
FANCD2
HNRNPL
CDK5RAP1
PCNP
MRPS23
ATP5PO
SRPRA
SPRYD3
SCAMP3
FAM189B
CA11
FUT11
TOR1A