ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX20230571 | Ishikawa
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◣ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

MTF2
CTNNB1
CKS2
SECISBP2
CALM3
PPP5D1
VCP
FANCG
TSC1
GFI1B
ARRDC4
KDM4A
IP6K2
SOD2
WTAP
DDX23
CLTC
CYCS
LRP6
NXF1
GATB
PDCD4
CALM2
DOLPP1
ATAD2
LAMP1
NOTCH2NLC
SESN3
HEXA
NAGPA
CFAP20
CALM1
PHIP
SAP30BP
RECQL5
CNOT1
MCU
KCTD9
CDCA2
CCDC77
KDM5A
KPNB1
ZC3H6
CYP51A1
KMT2D
RHEBL1
ZNF124
BRWD1
TCF3
CHD2
ZKSCAN2
TMEM199
SEBOX
POLDIP2
PPWD1
CENPK
LAT
SPNS1
TOP2B
SENP2
RPLP1
ARNTL
WASHC2A
MXD4
TSPYL2
CCNL1
DYRK1B
ATG14
RBM42
TYK2
IPO11
DIMT1
CCDC88A
POLR2J3
KMT5B
WASHC2C
HEXIM2
DDIT4
KDM4B
TAF5
MSMO1
RBL1
PRKACA
PIK3IP1
NLK
HSP90B1
RAB42
MRM3
GLOD4
SPATC1L
TRMO
PNRC2
PBLD
HNRNPH3
ZFAND2A
SLC3A2
NOTCH2NLA
TBCCD1
DNAJB11
CCNI
TROAP
PIK3R3
DOHH
FZR1
PI4K2A
MORN4
CCNG2
NOTCH2
TDRKH
HNRNPAB
TOMM22
B4GALNT3
NUP214
DIP2A
GATAD2A
ENDOV
GABPB1
CHPF2
ABCF2
SPRED1
COQ7
VIRMA
IST1
TOM1L2
DRC3
SCGB1C2
MRTO4
EMC1
ARHGEF12
RCOR1
FOXJ3
PRDX1
SCGB1C1
ODF3
ZNF518A
RCL1
UBE2D3
TRIAP1
COX6A1
ERAL1
RFX5
H2AX
DPAGT1
HMBS
MRPS35
FAM204A
GOT1
UBC
STX18
PINX1
ITFG2
OGT
AJUBA
PKM
TRIP4
PCLAF
HBS1L
FUS
OPA1
SPATA25
NEURL2
CTSA
ZSWIM1
EIF2D
SPTLC1
TMEM41A
ZNF789
ATP5MF-PTCD1
ATP5MF
TMEM242
RPLP0
GCN1
PAFAH2
AP1G1
CCDC59
TSFM
EEF1AKMT3
METTL1
CYP27B1
RPS26
MYLIP
ARL6IP1
CALCOCO1
MANF
RBM15B
NOTCH2NLB
SEPTIN4
MTMR4
RDH5
ITGA7
BLOC1S1
WASHC5
NSMCE2
NCBP2AS2
NCBP2
WDR53
FBXO45
ZFAND4
TFCP2
SHBG
FXR2
MEF2A
JPT1
TMEM222
SP2
MTMR2
UBB
GTF2H3
EIF2B1
VPS33A
HSPA5
HAGH
FAHD1
TOMM40
IDH3B
L3MBTL2
AMD1
DNAJB12
GPN2
GPATCH3
TRIP12
FBXO36
TIMM22
PKLR
FDPS
GIPC1
UBN1
GLYR1
COPS8
AP3M2
RERE
MVD
MAGOHB
HMGCL
SNRNP70
ACTL6A
RPS3
WDR25
WARS1
NDUFS7
ZNF212
ATF4
VAMP1
PNRC1
HMGCR
NMNAT1
LZIC
SSNA1
ANAPC2
BAZ2A
ATP5F1B
SMN2
SMN1
ID2
UNK
H3-3B
BRIP1
PRSS22
RNF103-CHMP3
RMND5A
UBE2B
CDKL3
SRSF7
HMGB1
USPL1
UBQLN1
C12orf43
RNASEH2C
KAT5
ZNF56
P4HB
ARHGDIA
ALKBH3
CDKN2C
ARF4
FAF1
IARS1
NDUFB5
MRPL47
CALR3
C19orf44
UBALD2
IER5
GSTO2
TEPSIN
NDUFAF8
ATG9B
ABCB8
MED23
ENPP3
GTF3C5
RPUSD4
FAM118B
AMOTL2
MRPL21
IGHMBP2
TGFBRAP1
C2orf49
MAGOH
TIMM21
FBXO15
G3BP1
MPV17L2
PEX3
ADAT2
GPAM
DUS2
DPEP2NB
DDX28
NABP1
SPRYD3
GHITM
PRR5L
COMMD9
KANSL2
PSTK
TSPAN31
MARCHF9
CDK4
AGAP2
MCM7
AP4M1
ZNF143
TCF12
HPS5
GTF2H1
C5orf51
MRPL48
RPL22L1
RPS11
RPL13A
GART
PEPD
APTX
DNAJA1
CD68
EIF4A1
LOC100996842
MPDU1
DGLUCY
RPS6KA5
ZNF8
RPS28
NDUFA7
PLK2
GSTA4
PFKM
SENP1
FAM149B1
ECD
ADK
EIF4A2
VPS37A
CNOT7
SRSF1
RBX1
SUPV3L1
ATXN2L
DCAF8
PACSIN2
MRPL58
BAGE4
BAGE3
BAGE
SLC25A36
COA6
ZNF540
ZNF571
FEM1A
C19orf48
CTDP1
KCTD5
PCCB
GRHL2
RAP2A
DYNLL1
BORCS7
COQ9
CIAPIN1
PNKP
AKT1S1
TBC1D17
RPP30
MRPL45
SLC25A42
MRPL27
EME1
HNRNPUL1
PAN2
IL23A
EIF5
ZNF585B
ZNF383
FDFT1
ACSL3
SFSWAP
FANCD2
MFN2
PPP1R8
CHCHD1
ZSWIM8
FUT11
VPS11
RPL5
ITGB3BP
EFCAB7
ING3
ARL15
CNOT3
TMEM217
TBC1D22B
MRPL39
TET3
DNTTIP2
HOMEZ
MED4
APLP2
TOB2
CHCHD6
XRRA1
SPCS2
SLC25A19
SEC13
BECN1
PSME3
SLC25A53
FAM199X
POMZP3
SPRYD4
SLC7A6OS
PRMT7
UBE3B
ZSWIM7
TTC19
ZNF574
GRIK5
TMEM190
TMEM238
RPL28
TULP3
TSN
SEL1L
SNRPC
C9orf85
ABHD17B
USP42
HERPUD1
CALR
RAD23A
FARSA
CDK11B
SRPRA
DBNDD2
ABT1
COPZ1
DIABLO
FAM126A
POLG
PTP4A1
TRMT61B
NDUFB8
HIF1AN
TAOK2
RLF
MTHFD2
ELAVL2
TEDC1
CRIP1
ASF1B
ENSA
RGS14
LMAN2
PPIA
AFF1
ZCCHC4
RPL12
LRSAM1
NUFIP2
DPP8
SRSF11
LRRC40
KHSRP
MRPS16
DNAJC9
SLC34A2
MRPS11
MRPL46
TFRC
OAZ1
MIS18A
NOLC1
ACAD9
SF3B5
TAF6
MBLAC1
CNPY4
BRIX1
F11R
RPL3
RPS2
RNF151
TBL3
NOXO1
HOXD9
HOXD8
PHF5A
ACO2
ZNF839
HOXD10
GID4
ATPAF2
AAAS
ERICH4
DMAC2
YWHAQ
TBRG4
RASEF
ATP5IF1
CHD4
OAT
SUPT5H
RPS16
ATP6V1G1
USP30
NMT1
DCAKD
CCT2
ADPGK
RAB4B
MIA
ZNF721
PIGG
METTL9
CSRNP2
GTF2B
DDX46
HGS
ARL16
ATG7
BRF2
VAMP2
PER1
VCPKMT
MICU2
RPS12
TRUB1
FAM53C
CDC25C
TMEM262
ZFPL1
CDCA5
POLR3F
DZANK1
SLC30A6
TNKS
DDX50
KCNIP2
FREM2
ADNP
EEF2
PSPH
CCT6A
MCCC1
HNRNPL
IDI1
WDR37
LRP5L
KAT7
CDH1
FAM133B
UMPS
PISD
DDX19A
COQ8A
ICE2
DNAJC19
EVI5L
CASC3
TBC1D22A
YPEL2
LAS1L
DCP1A
WDR11
RBM14-RBM4
RBM14
CYLD
CFAP43
CWC25
TUFT1
GOSR1
MRPL4
TMA7
CCDC51
ATRIP
FRA10AC1
EIF1
ECSIT
CNN1
SLC25A3
ZSWIM6
RRBP1
KDM5C
STX16
FBXO24
LRCH4
NBEAL2
CCDC12
POLR3D
TSEN34
NAA80
IFRD2
HYAL3
C2orf42
RANBP6
KIAA2026
ATP8B1
HMGCS1
RHOB
COMMD1
CCT4
PARPBP
NUP37
ZNF687
CCNC
RWDD1
VCL
PA2G4
EEF1AKNMT
CFAP410
ZNF335
SAP18
CBWD2
SDHB
KAZN
ZWILCH
SNAPC5
RPL4
GTF2IRD2B
CCDC86
RETSAT
CCDC130
NUP160
PGBD4
EMC7
CCDC97
PLA2G1B
SRSF6
TIMM17A
LMOD1
AZIN1
BSDC1
DSTYK
TOP3A
SMCR8
PARL
FAM180B
NDUFS3
KBTBD4
PTCD3
POLR1A
KDM2A
DHRS3
TMEM79
SMG5
RTTN
GTF3C3
C2orf66
MSTO1
CKAP2
VPS36
TMEM53
ARMH1
OAZ3
MRPL9
C8orf33
NDUFAF3
IMPDH2
DALRD3
SLC26A2
PSMD3
CDKN1A
SRSF2
MFSD11
METTL23
CBWD5
CBWD3
CBWD6
NRDE2
ZFYVE21
XRCC3
UHMK1
DCP1B
TMEM126A
PKN2
SPTY2D1
SPRING1
RNFT2
BRMS1
RIN1
B4GAT1
WDR89
IL4I1
NUP62
ATF5
TACSTD2
PDE6D
COPS7B
COQ10A
ANKRD52
RPL18A
SSR3
SETD3
CCNK
MRPL37
CYB5RL
PLEKHM3
TENT5C
TJAP1
TMEM256
PLSCR3
NLGN2
NARF
CYBC1
TBCB
POLR2I
OVOL3
TBC1D23
SLC2A1
NECAP1
PNP
PIP4P1
ZNF444
RARS2
ORC3
CLK3
SACM1L
AP5Z1
RANBP2
TMEM208
LRRC29
TFIP11
C4B_2
C4B
STK19
LOC110384692
DXO
C4A
POLR1F
ATP9B
COMMD4
GTPBP10
TMEM88
KDM6B
SNRPD3
GUCD1
FAR1
NOC4L
DDX51
ZBTB4
SLC35G6
POLR2A
WDR4
AGFG2
TSKS
AP2A1
ZBTB45
SLC27A5
PANK2
SF3A3
PRTG
PTEN
KLLN
SUMF1
DOK3
DDX41
LMTK2
U2SURP
GNAL
CHMP1B
AK2
CRLS1
VWA3B
BCKDK
KAT8
BRAP
ACAD10
CCNH
C12orf65
ATP5PD
KCTD2
MAPKAPK5
KLF5
GPR84
TOX4
RAB2B
SLC24A1
INTS14
CRBN
POLG2
DDX5
PDCD6IP
CIC
NOL11
TMEM128
GTF2I
TDG
C12orf73
PEX26
ARHGAP19
CORO7-PAM16
CORO7
DNAJA3
ISOC2
NDUFB10
RPL3L
PCNA
TMEM230
FAM76B
CEP57
UBAP2
VAC14
NAT10
ANKFY1
PSMF1
TMEM254
RPTOR
SFPQ
PITPNM1
UBE2C
NUP54
ANKHD1-EIF4EBP3
ANKHD1
USP8
TEFM
THUMPD1
CDS2
BCL2L13
ATP6V1E1
CEP350
CCDC134
SYNGAP1
CUTA
PHF1
ZNF77
ZSCAN22
TIMM50
PGAP2
ZC3H10
RPL41
ESYT1
STARD4
SELENOH
TRA2B
BTBD18
XPO1
HDAC6
STIL
ATP5MC2
PPP4R3B
KDM4D
CWC15
MTRR
FASTKD3
RPL22
RNF207
ACOX3
TRMT44
TMEM167B
TSR1
SGSM2
NDUFV1
IVD
ZSWIM4
RBSN
RPSA
SCRN2
MRPL10
LRRC46
OSBPL7
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
MDM4
LGMN
KCTD7
CAND1
RFX1
SRP9
HAUS5
SPTLC2
METTL2B
MMUT
CENPQ
WDHD1
SOCS4
OXNAD1
DPH3
WDR6
ATG9A
ANKZF1
CBX5
HNRNPA1
RPS3A
RPS20
RUBCN
PDK2
UQCC3
LBHD1
CSKMT
C11orf98
HUS1
NRDC
GOLGA3
ETF1
UNKL
C16orf91
PERCC1
PHAX
ALDH7A1
ERCC5
THRAP3
GSC2
LEMD3
ATF7-NPFF
ATF7
RPL35A
IQCG
LMLN
TMEM14A
TCTN3
NUF2
RPL11
MIS12
DERL2
SCFD1
COX10
THOC1
SRCAP
LOC730183
RBM19
MRPS15
FOS
C14orf93
SARAF
DAZAP2
CKAP2L
TMEM265
PHKG2
POC5
SKP1
THAP9
SEC31A
PRKAG1
SGO1
CLN8
GINS1
HOMER1
C6orf226
ASH2L
RAB11A
EXOSC3
ATR
NUP133
ABL1
NOP58
FAM83D
TFPT
PRPF31
MRPS23
SLC44A2
PACSIN3
ARFGAP2
CAAP1
SETDB2
CAB39L
LONP1
CATSPERD
SNX11
CBX1
NDUFB6
DNM2
MARCHF8
SWSAP1
TMBIM6
FLYWCH1
RFXANK
BORCS8
DMRT2
TMPO
TTC13
BOD1L1
NCL
DNAJB1
TECR
CITED2
BMS1
MCCC2
ZWINT
PPFIBP1
ATP6V0D1