ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX20230573 | Ishikawa
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◣ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

MTF2
CTNNB1
CALM3
PPP5D1
CCDC88A
RCL1
B4GALNT3
CLTC
MCU
SLC44A2
NOTCH2NLC
FOXJ3
LAMP1
MRM3
GLOD4
IP6K2
TMEM41A
MRPL21
IGHMBP2
SCGB1C2
SCGB1C1
ODF3
NOTCH2NLA
CYCS
CKS2
SECISBP2
ATAD2
SOD2
WTAP
ZC3H6
ATP8B1
KDM4A
RASEF
HEXA
CCNL1
PIK3IP1
PHIP
DIP2A
ATG14
STX18
PNRC1
CDKN2C
FAF1
PNRC2
DDX23
WASHC2C
NOTCH2
GRHL1
CALM1
HEXIM2
SEC13
UBE2D3
ZFAND2A
LAT
SPNS1
HMGCL
IST1
NXF1
BRWD1
DOLPP1
NAGPA
LRP6
KCTD9
CDCA2
POMZP3
MAPKAPK5
EIF2D
TET3
TRIP4
PCLAF
NUP214
CHD2
CALM2
KPNB1
NOTCH2NLB
GPAM
TRIAP1
COX6A1
POLR2J3
NCBP2AS2
NCBP2
KMT5B
SESN3
PBLD
HNRNPH3
ZKSCAN2
WASHC2A
TSC1
GFI1B
UBE2B
CDKL3
ZNF212
MRTO4
EMC1
PDE6D
COPS7B
ADNP
TCF3
IPO11
DIMT1
TRIP12
FBXO36
TMEM222
TOMM22
PINX1
DOHH
FZR1
TSPYL2
KMT2D
RHEBL1
WDR53
FBXO45
MXD4
SMN2
SMN1
VCP
FANCG
PKM
NMNAT1
LZIC
ARHGEF12
DDIT4
MTMR2
STX16
PRSS22
TAF5
RPS2
RNF151
TBL3
NOXO1
CYP51A1
COPS8
CHPF2
ABCF2
GRHL2
PEX3
ADAT2
MCM7
AP4M1
NOC4L
DDX51
SPRED1
PEPD
DBNDD2
SPATC1L
SRP68
ZACN
GALR2
TAOK2
TIMM22
PDCD4
CNOT1
CANT1
OPA1
DYRK1B
GTF3C5
TSN
SSNA1
ANAPC2
ERCC1
ADPGK
ZNF721
PIGG
SPRYD4
DCP1A
OR6B2
NDUFA10
SMAGP
PIK3R3
TOP2B
COQ7
SPTLC1
FUS
SNRNP70
CLCN7
YPEL2
TMEM262
ZFPL1
CDCA5
RPS28
NDUFA7
AJUBA
TMEM242
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
MRPL58
HOXD9
HOXD8
TAS1R1
NOL9
SLC7A6OS
PRMT7
WDR25
WARS1
WASHC5
NSMCE2
VIRMA
TRMT61B
TXN2
RCOR1
MRPS35
C8orf33
GTF2H3
EIF2B1
PI4K2A
MORN4
NSFL1C
MYLIP
PTEN
KLLN
BCKDK
KAT8
ENDOV
MED23
ENPP3
TMEM199
SEBOX
POLDIP2
DCAF8
RPLP1
SUPV3L1
SRSF11
LRRC40
EIF4A3
HNRNPAB
ARF4
CFAP410
RBM42
MANF
RBM15B
DNAJC11
PRKACA
UBQLN1
SRRD
HPS4
MRPL39
CCDC77
KDM5A
MOB3A
IZUMO4
TIMM21
FBXO15
SCNN1A
LTBR
SPRYD3
MED4
TOB2
ACOX3
TRMT44
COMMD1
CCT4
USP30
DNAJB12
CORO7-PAM16
CORO7
DNAJA3
DUS2
DPEP2NB
DDX28
ADK
TMA7
CCDC51
ATRIP
HMGB1
USPL1
SRSF1
MEF2A
VPS37A
CNOT7
TCF12
KCTD5
GTF3C2
ZSWIM7
TTC19
PHAX
ALDH7A1
IDH3B
RPP30
UBC
CHCHD1
ZSWIM8
FUT11
MRPL4
GMFB
RFXANK
BORCS8
TIMM50
VPS33A
HBS1L
C5orf51
SPATA25
NEURL2
CTSA
ZSWIM1
TMEM88
ZC3H3
KDM6B
TENT5C
ATXN2L
MFN2
OAZ3
MRPL9
NLK
TSPAN31
MARCHF9
CDK4
AGAP2
MARCHF8
PSMD3
RDH5
ITGA7
BLOC1S1
CRBN
ACSL3
ALKBH3
FANCD2
ZNF124
COG2
DPP8
COQ9
CIAPIN1
NABP1
PACSIN3
ARFGAP2
DSTYK
PCID2
CUL4A
PRKCZ
NECTIN4
FRA10AC1
ZNF518A
UBN1
GLYR1
CRYBG2
BRF2
GNB2
PRTG
NFATC4
KDM4B
NDUFB8
HIF1AN
DDX19A
HSP90B1
CLN8
TSR2
PARPBP
NUP37
CCDC86
CASC3
JMJD1C
USP42
GATAD2A
FAM76B
CEP57
HSP90AB1
CLDN4
TMEM217
TBC1D22B
NDUFAB1
NOL10
MKNK2
ARRDC4
GHITM
TFRC
LAD1
EXT1
TOB1
ZBTB7B
ARNTL
LENEP
GNAL
CHMP1B
MRPS11
MRPL46
MIDEAS
POR
TEKT2
ADPRS
GIPC1
PARL
HEBP2
CBWD2
TOP3B
FAM207A
CCNG2
TSR1
SGSM2
GABPB1
ZFAND4
APTX
DNAJA1
VAMP1
PACC1
ATG7
TIGAR
HAGH
FAHD1
MAGOH
MON2
DDX1
REXO1
ZNF789
ATP5MF-PTCD1
ATP5MF
THRAP3
TIGD6
HMGXB3
RARS2
ORC3
DPP9
PMPCA
ENTR1
PLEKHM3
ANKFY1
TBCB
POLR2I
OVOL3
TBRG4
EIF4A2
SUPT5H
RPS16
UBB
FAM180B
NDUFS3
KBTBD4
MRPS15
MRPL37
CYB5RL
MCCC1
NDUFS7
TTC4
METTL9
TJAP1
MVD
SDHB
NDUFV1
PALB2
DCTN5
SHBG
FXR2
SSU72
CCDC43
RASGEF1B
NOP14
GRK4
UBE2S
TARBP2
MAP3K12
NPFF
BRAP
ACAD10
SRPRA
YIPF6
ACAD9
HAUS5
AURKAIP1
VAC14
TFDP2
RERE
AMD1
RAD54L2
NBPF1
RLF
RPLP0
GCN1
UNK
H3-3B
POLR3F
DZANK1
JPT1
WAPL
RPL3
SENP2
PSMF1
CSRNP2
SFSWAP
HTRA2
DQX1
FAM53C
CDC25C
TDG
C12orf73
BRIX1
HERPUD1
MALL
ECSIT
CNN1
SMIM12
RTF2
FAM133B
GOLGA1
ERAL1
VDAC2
IER5
PRDX1
MARK3
TRMU
AP5Z1
LRRC37A3
MYBPC3
TMEM9
CFAP20
FAM149B1
ECD
RPS6KB2
PTPRCAP
GET3
RANBP2
UQCRC1
PELP1
ARRB2
DCAF10
PTPN4
NAA80
IFRD2
HYAL3
PFN2
PSTK
TMEM79
SMG5
ZGPAT
ARFRP1
COA6
SCFD1
POLR3D
MYBL2
SLC39A5
RNF41
NABP2
CNP
SARAF
TBCCD1
DNAJB11
CMTR1
DPY19L4
FAM204A
SAP30BP
RECQL5
RPS5
TSFM
EEF1AKMT3
ZW10
CLDN25
HIVEP2
GGCX
BCAS4
CBWD5
CBWD3
CBWD6
MTHFD2
MED9
DIABLO
TMEM126A
TNKS
GTF2H2C_2
GTF2H2C
RBSN
SP2
PPP1R8
UMPS
ZFAND5
PLCXD2
ABAT
WDR11
TSR3
GNPTG
PHF5A
ACO2
SLC35F5
NFKBIZ
ATXN2
ZC3H10
RPL41
ESYT1
RPUSD4
FAM118B
ZWILCH
SNAPC5
RPL4
C16orf89
ALG1
GID4
ATPAF2
SART1
FBF1
ULK2
CDKN2AIPNL
MRPL55
ZNF770
EEF2
VCL
SLC25A4
PLEKHN1
KLHL17
NOC2L
CIC
PKN2
GCHFR
RMDN3
PFKM
SENP1
TIMM44
MICU2
LTO1
DNAJC25-GNG10
DNAJC25
AMOTL2
ZBTB26
RABGAP1
TMEM254
ZNF574
GRIK5
CENPBD1
TMED2
AARS2
NUP160
DGLUCY
RPS6KA5
WDR43
PBRM1
GNL3
PA2G4
CABIN1
CCDC134
DCAF1
TEFM
ATF4
SLC3A2
TOP3A
SMCR8
ETV5
TRMO
BAZ2A
ATP5F1B
NUP188
DOLK
TULP3
PPIL4
CBWD1
OSCAR
NDUFA3
RBM25
WDR6
MRPL20
CCNL2
PPP4R3B
LONP1
CATSPERD
ZC3H15
SLC25A26
CALR3
C19orf44
THOC1
CZIB
MAN1A2
CALR
RAD23A
H2BC21
H2AC21
H2AC20
UBAP2
PPWD1
CENPK
GTF3C3
C2orf66
BOD1L1
TPRN
TMEM203
NDOR1
OAZ1
TVP23B
GSTO2
PSMD2
RBL1
TAF15
BRMS1
RIN1
B4GAT1
COQ10A
ANKRD52
PGBD4
EMC7
ZCCHC4
TROAP
MRPL48
CHSY1
TMSB10
WTIP
MPHOSPH10
MCEE
ZER1
PPP2R3B
EXO5
HOXD10
ZNF839
PPP1CC
SLC25A1
ANAPC11
ALYREF
ZNF148
OXNAD1
DPH3
ARL6IP1
FAM156A
FAM156B
HNRNPL
DDX46
GTF2I
TMEM248
NDUFB5
MRPL47
TDRD9
ATP5MPL
ID2
KCNIP2
YWHAQ
XPNPEP3
ST13
DNAJB7
CDH1
SMPD4
MZT2B
LMTK2
UBIAD1
GART
CFAP43
GXYLT1
MDM4
SRSF6
HGS
ARL16
FPGS
TFIP11
EXOSC8
ALG5
RPL22
RNF207
SUMF1
RWDD1
WDHD1
SOCS4
TSPO
MCAT
ARAP2
EID2B
EID2
H2AX
DPAGT1
HMBS
ZNRD2
FAM89B
EHBP1L1
CCDC97
NUP93
BECN1
PSME3
TSNAXIP1
RANBP10
RPL17-C18orf32
RPL17
C18orf32
RNF121
LOC100133315
EED
HMGCS1
C19orf48
HPS5
GTF2H1
POLR2C
EFCAB14
FBXW2
PEX26
CDK11B
ETNK1
UBE2D2
SC5D
STOML2
PIGO
FAM214B
RRBP1
LEKR1
SKA3
MRPL57
KIAA0232
MSMO1
TAF6
MBLAC1
CNPY4
ZNF517
ZNF34
RPL8
DNAJC19
YIF1A
TMEM151A
ABRAXAS2
EEF1AKMT2
DENR
RCE1
C6orf132
VCPKMT
SEC62
SULT2B1
RRP7A
DRG2
IDI1
WDR37
ELF2
STYXL1
GTF2IRD2B
OGT
EDF1
TMEM265
PHKG2
PLXNB2
TACO1
EXOSC3
NME6
CHUK
SAR1B
SENP5
LDHA
SLC35A3
PSPH
CCT6A
DYNLL1
PPT1
GEMIN7
ZNF296
TMED9
B4GALT7
TSEN15
ZSWIM6
ATG9B
ABCB8
FAM187A
EFTUD2
CCDC103
NOCT
MRPS16
DNAJC9
GARS1
LRRC59
PLK2
MAML3
GOT1
KDM3B
FBXO24
LRCH4
SDE2
NUS1
ZBTB45
SLC27A5
PPARD
RNASEH2C
KAT5
RAD50
MAP1LC3B
FBXO31
ATP6V1C1
ORMDL3
GSDMB
TMEM256
PLSCR3
NLGN2
IL4I1
NUP62
ATF5
SLC33A1
EIF5
UBR4
CUTC
COX15
HDAC10
TUBGCP6
SH3GL2
SURF6
DCPS
MACROD1
TNKS2
IARS1
CCNC
TFCP2
THUMPD1
EIF3F
SLC25A38
CLP1
PSMD12
ZDHHC5
SLC9A3R1
MOB4
TAF3
WSB1
GADD45G
UBE3B
UCP2
NOC3L
CHD4
RUVBL1
EEFSEC
ZNF207
C17orf75
TRIP11
TRIM65
MRPL38
SNX19
POLR2J
FAM227B
DTWD1
GATB
RPSA
VPS11
C4B_2
C4B
STK19
LOC110384692
DXO
C4A
PCNA
TMEM230
CDS2
TEPSIN
NDUFAF8
DOK3
DDX41
TMEM184A
CCNI
SNAPC3
ITFG2
RNF166
CTU2
NUF2
UHMK1
METTL1
CYP27B1
RPS3
ERI1
ATP6V0D1
AGRP
FAM122A
TBC1D22A
SRP9
PNPT1
TAF1B
XPO4
METTL2B
CTDP1
PRR5L
COMMD9
ALDH3A1
RPL29
SNRPD3
GUCD1
KLHL11
ZNF292
TSPAN10
NPLOC4
PABPC1
NDUFC2-KCTD14
NDUFC2
TTC9C
HNRNPUL2
PLAG1
CHCHD7
HSPA5
TMEM104
NAT9
C16orf70
COMMD2
MAN2C1
PLEKHH3
CNTNAP1
CCR10
USP14
TMEM95
KCTD11
XRRA1
SPCS2
GRAMD2B
SYBU
DNAJC27
LIPA
UNKL
C16orf91
PERCC1
NOM1
EIF2B5
SLC24A1
INTS14
SETD1A
ORAI3
ATAD3B
GOLGA3
CRCP
RBBP8NL
ICE2
LTV1
DNM1L
STAT1
SUGP1