ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX20230569 | Ishikawa
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◣ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

CTNNB1
MTF2
TSC1
GFI1B
CKS2
SECISBP2
LRP6
GATB
NAGPA
ATAD2
CALM2
SOD2
WTAP
IP6K2
BRWD1
KCTD9
CDCA2
HEXA
NOTCH2NLC
KMT2D
RHEBL1
KDM4A
CALM3
PPP5D1
CLTC
CCDC88A
ZC3H6
CCNI
WASHC2A
KPNB1
VCP
FANCG
CCDC77
KDM5A
PPWD1
CENPK
CYP51A1
CCNL1
NXF1
PDCD4
WASHC2C
SAP30BP
RECQL5
TCF3
PNRC2
CFAP20
KMT5B
CALM1
CNOT1
ARHGEF12
ATG14
NOTCH2NLA
ARRDC4
NOTCH2
DDX23
TOP2B
ZKSCAN2
LAMP1
RPS26
IPO11
DIMT1
SESN3
CCNG2
OGT
DDIT4
GSTA4
SPRED1
TMEM199
SEBOX
POLDIP2
STX18
HEXIM2
UBC
LAT
SPNS1
DOLPP1
RBL1
CHD2
PBLD
HNRNPH3
PIK3R3
TMEM41A
PHIP
POLR2J3
MCU
CYCS
RCOR1
UBE2D3
TRIP4
PCLAF
IDH3B
MRM3
GLOD4
RBM42
NOTCH2NLB
TCF12
UBB
SCGB1C2
TAF5
PRR5L
COMMD9
AJUBA
SPATC1L
OPA1
IST1
GRHL2
ZNF518A
CCDC59
TRIP12
FBXO36
WDR53
FBXO45
DYRK1B
DIP2A
TRIAP1
COX6A1
AP1G1
TRMO
HMGB1
USPL1
ARNTL
SENP2
WASHC5
NSMCE2
GTF3C5
GABPB1
TMEM242
TSFM
EEF1AKMT3
METTL1
CYP27B1
NCBP2AS2
NCBP2
TOMM22
RPLP1
ATF4
ERAL1
TYK2
ZNF124
NLK
ATXN2L
ENDOV
PAFAH2
CALCOCO1
HAGH
FAHD1
MEF2A
VIRMA
B4GALNT3
RFX5
FOXJ3
SPATA25
NEURL2
CTSA
ZSWIM1
MRPL21
IGHMBP2
EIF2D
GPAM
MED23
ENPP3
ITFG2
RDH5
ITGA7
BLOC1S1
CHPF2
ABCF2
PDE6D
COPS7B
HMGCL
GTF2H3
EIF2B1
MRPL39
EAPP
TIMM22
PEX3
ADAT2
TET3
MRTO4
EMC1
UBE2B
CDKL3
FUS
SLC3A2
SRSF7
NDUFS7
MCM7
AP4M1
SHBG
FXR2
VPS33A
PRSS22
MRPS35
UBE3B
SCGB1C1
ODF3
MTMR2
FAM204A
MAPKAPK5
ALKBH3
MXD4
TROAP
BORCS7
ABT1
ZNF335
DBNDD2
NUP214
ING3
C5orf51
JPT1
TOB2
HNRNPAB
PRKACA
TMEM222
MAGOHB
PINX1
SPTLC1
H2AX
DPAGT1
HMBS
HOXD9
HOXD8
SUPV3L1
PRDX1
POMZP3
TBCCD1
DNAJB11
RPUSD4
FAM118B
ZSWIM6
ZNF585B
ZNF383
DUS2
DPEP2NB
DDX28
FEM1A
RCL1
CWC25
ZCCHC4
DOHH
FZR1
FAM149B1
ECD
SFSWAP
COPS8
CDKN2C
FAF1
UBQLN1
RPL22L1
PLK2
PI4K2A
MORN4
NMNAT1
LZIC
HBS1L
ZNF212
SNRNP70
TIMM21
FBXO15
SMN2
SMN1
SPRYD4
GSTO2
RAP2A
NDUFB8
HIF1AN
AMD1
WDPCP
MDH1
GPN2
GPATCH3
COQ7
RTTN
RNF103-CHMP3
RMND5A
POLR3F
DZANK1
ACTL6A
RPLP0
GCN1
PSTK
TOP3A
SMCR8
PNKP
AKT1S1
TBC1D17
FAM180B
NDUFS3
KBTBD4
TSPAN31
MARCHF9
CDK4
AGAP2
DNAJB12
ITGB3BP
EFCAB7
GOT1
ARL6IP1
PKM
TFRC
G3BP1
MSMO1
STX16
MAGOH
FRA10AC1
CCDC86
MRPL48
NDUFA9
AKAP3
PGBD4
EMC7
HOXD10
USP30
TRMT61B
GHITM
EIF4A2
ZNF540
ZNF571
RPS3
P4HB
ARHGDIA
ZNF789
ATP5MF-PTCD1
ATP5MF
RNASEH2C
KAT5
HSPA5
TMEM217
TBC1D22B
PFKM
SENP1
CHCHD1
ZSWIM8
FUT11
TOM1L2
DRC3
TDG
C12orf73
SSNA1
ANAPC2
RPS28
NDUFA7
BAZ2A
ATP5F1B
BRIP1
SLC7A6OS
PRMT7
COMMD4
CCNC
SP2
SPRYD3
SNRPD3
GUCD1
SEC13
TAOK2
CSRNP2
PEPD
SRSF1
RBM48
PEX1
AP3M2
IER5
PAN2
IL23A
WDR25
WARS1
TFCP2
BAGE4
BAGE3
BAGE
RPP30
SF3B5
TGFBRAP1
C2orf49
SLC25A53
FAM199X
PIK3IP1
DNTTIP2
CKAP2
VPS36
PHF5A
ACO2
ATP6V1G1
RANBP6
KIAA2026
MED4
TSN
DCP1A
RLF
NDUFB5
MRPL47
TFPT
PRPF31
TSR1
SGSM2
C12orf43
VPS37A
CNOT7
MYLIP
APLP2
MRPS16
DNAJC9
SRSF11
LRRC40
CBWD5
CBWD3
POLG2
DDX5
TBRG4
PNRC1
GNAL
CHMP1B
MIS18A
GOSR1
SNRPC
GTF3C3
C2orf66
POLR1F
ZC3H10
RPL41
ESYT1
PPP1R8
MFN2
KDM4B
DSTYK
RPS12
GPR84
RPS2
RNF151
TBL3
NOXO1
DGLUCY
RPS6KA5
RAB11A
ZWILCH
SNAPC5
RPL4
BECN1
PSME3
AP5Z1
GTF2I
UBN1
GLYR1
ZNF8
MRPL58
ZNF514
ZNF2
ISY1-RAB43
ISY1
TACO1
POLR3D
ID2
PCNA
TMEM230
HSP90B1
ARL15
HERPUD1
PPIL4
CLK3
DDX46
U2SURP
ZFYVE26
RAD51B
UMPS
SUMF1
SEC62
RANBP2
TBC1D22A
WDR11
GART
RWDD1
MIA3
PCID2
CUL4A
TSPYL2
C19orf48
ELAVL2
PARPBP
NUP37
VAMP1
ATP8B1
SCFD1
CDK11B
RAB5B
PMEL
CDK2
AFF1
ZSWIM7
TTC19
COQ9
CIAPIN1
TSEN34
RBM19
ATG9B
ABCB8
MMUT
CENPQ
PRKAG1
PLEKHM3
PTCD3
POLR1A
PPIA
TMEM88
KDM6B
GATAD2A
GIPC1
KHSRP
C8orf33
BRIX1
RPL12
LRSAM1
TULP3
MRPL45
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
ATG7
HAUS5
SPRING1
RNFT2
DNAJC19
PACSIN3
ARFGAP2
TFIP11
TSR2
ZBTB4
SLC35G6
POLR2A
USP42
LMTK2
FEM1C
ZFAND4
CBWD2
SETD3
CCNK
TMBIM6
LDAH
KDM5C
DPP8
ZNF143
PISD
FAM98B
RPL22
RNF207
CASC3
KDM2A
FBXO24
LRCH4
RBM14-RBM4
RBM14
RBBP8NL
BRF2
ADPGK
AZIN1
COQ10A
ANKRD52
MDM4
NMT1
DCAKD
ZNF721
PIGG
APTX
DNAJA1
ZNF839
NECAP1
RHOB
MRPS11
MRPL46
CDS1
RPL3
PELP1
ARRB2
GTPBP10
SRSF2
MFSD11
METTL23
XRRA1
SPCS2
AARS2
VPS11
MRPL27
EME1
L3MBTL2
RASEF
H2BC21
H2AC21
H2AC20
NUP54
EIF4B
TEPSIN
NDUFAF8
CIC
ACAD9
OAZ3
MRPL9
GFM1
BMS1
HOMER1
ACOX3
TRMT44
SLC30A6
HSP90AB1
VAC14
SLC35B2
MAML3
GINS1
PPT1
ZFAND2A
HMGCR
SRPRA
NOLC1
CTDP1
SF3A3
FANCD2
ADK
ZNF17
ATP5IF1
DIABLO
ZCCHC3
C20orf96
CDKN1A
RAD51AP1
C12orf4
NOL10
RPL5
C9orf85
ABHD17B
COA6
CCDC97
BRAP
ACAD10
TMEM262
ZFPL1
CDCA5
KCTD5
SLC26A2
TMEM167B
PKLR
FDPS
KDM4D
CWC15
NUP42
SLC24A1
INTS14
FAM133B
NABP1
SLC25A19
IARS1
NRDE2
TBC1D19
VCPKMT
RERE
LAS1L
FAM53C
CDC25C
EIF1
UNK
H3-3B
NUP133
RGS14
LMAN2
ALG10
MVD
TJAP1
MYBL2
CCNH
CRBN
TMA7
CCDC51
ATRIP
PSMD3
CBWD6
KLHL12
AAAS
LANCL2
NAT10
NDUFV1
PARL
MARCHF8
KRT80
YWHAQ
DHDDS
RARS2
ORC3
ATP9B
TMEM208
LRRC29
RFXANK
BORCS8
CLDN6
CLDN9
TANK
SRSF6
KAT7
TOMM40
OXNAD1
DPH3
SKP1
UBR4
RBSN
TMEM126A
ERICH4
DMAC2
UGP2
UQCC3
LBHD1
CSKMT
C11orf98
HNRNPL
MRPL37
CYB5RL
TMEM94
TMEM190
TMEM238
RPL28
SLIRP
ALKBH1
H4C2
H3C2
H2AC4
IL4I1
NUP62
ATF5
DOK3
DDX41
MRPL55
UHMK1
ZNF56
DR1
RPS11
RPL13A
CRLS1
COPZ1
YPEL2
COMMD2
CHD4
NUFIP2
PPFIBP1
TSNAXIP1
RANBP10
TTC13
CHCHD6
TIMM17A
LMOD1
ATF3
TRAPPC8
SLC25A3
AP3S2
DDX50
PTEN
KLLN
GTPBP6
CALR3
C19orf44
WDHD1
SOCS4
CLTCL1
MNAT1
ANKFY1
MRPS22
PSMB7
CCT2
FREM2
C16orf89
ALG1
SRRD
HPS4
ZNF444
RPTOR
RETSAT
SEPTIN4
MTMR4
ATR
TAF6
MBLAC1
CNPY4
PALB2
DCTN5
PCDH9
NUF2
ADNP
MAP3K13
DDAH1
CCN1
ZWINT
CD68
EIF4A1
EIF4A3
LOC100996842
MPDU1
NUP107
SLC25A26
SAP18
PEX26
KCNIP2
RCOR3
PTP4A1
INTS9
HMBOX1
TBC1D23
MANF
RBM15B
ATP6V1C1
THOC1
HTRA2
DQX1
PA2G4
LEMD3
SACM1L
POLG
BCAR3
NDUFAF3
IMPDH2
DALRD3
ZNF574
GRIK5
UBALD2
PACSIN2
SKA2
PRR11
NAA80
IFRD2
HYAL3
RBM28
SCAF11
TMEM128
COX10
DCAF10
HDAC4
DNM1L
TMEM14A
TDRKH
GID4
ATPAF2
TRA2B
MIS12
DERL2
H2BC5
H1-4
RAD52
ARF4
SEL1L
ARL14EP
GSPT1
TEFM
TPR
ODR4
MFSD1
SMPD4
MZT2B
SRP9
HGS
ARL16
LARS2
SPTY2D1
CBX5
HNRNPA1
PPP1R11
POLR1H
PTPN6
C12orf57
BRMS1
RIN1
B4GAT1
HMGCS1
CAT
MRPS15
PTPN4
NDUFB10
RPL3L
GADD45G
NOL11
ASF1B
MRPS31
ERCC5
DCAF8
NBPF1
METTL9
MAN1A2
SCAMP3
FAM189B
PANK2
FAM156A
FAM156B
DCP1B
NARF
CYBC1
GMFB
NDUFA12
TMEM254
UNKL
C16orf91
PERCC1
TIMM50
MTHFD2
BTG1
CALR
RAD23A
FARSA
NME1-NME2
NME1
TNKS
SLC25A42
SMIM13
KANSL2
ELOVL5
TRUB1
YEATS4
HSD17B12
POLE3
C9orf43
ALAD
ZNF77
MRPL44
TCERG1
ACSL3
EIF5
RRBP1
OTUD5
NUS1
FAM76B
CEP57
LGMN
TOX4
RAB2B
ZBTB45
SLC27A5
FAM126A
CREBL2
USP15
MXI1
MRPS18B
ATAT1
AAR2
EPG5
TRIP11
NSRP1
TMPO
KDM5B
RTN4IP1
QRSL1
TTC4
ASH2L
COL23A1
F11R
PKN2
CBWD1
XPO1
THUMPD1
AASDH
HUS1
ADAT1
RAD18
ADARB1
COMMD1
CCT4
C6orf226
SYNGAP1
CUTA
PHF1
TCAIM
GTF2H2C_2
GTF2H2C
NDUFC2-KCTD14
NDUFC2
MPV17L2
LTO1
RAB4B
MIA
TCTE3
ERMARD
GOLGA3
ELF2
DCAF1
VDAC2
EEF2
TNPO1
SKIV2L
NELFE
THRAP3
ANKRD17
CCDC130
FAM227B
DTWD1
MARK3
ATG16L1
PNP
PIP4P1
SARAF
DDX19A
ATP5MC2
SSU72
PSMD7
RPS20
MRPS23
SLC35B1
VCL
ELAC2
NCAPH2
LMF2