ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX535454 | A-375
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◣ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◢ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

DUX4
GSTA4
COL23A1
STX16
FRA10AC1
EAPP
MTRNR2L2
MSH3
DHFR
KIF5C
SEMA6A
LIMK1
PHC2
FAM98B
MTRNR2L1
MTRNR2L8
DRG2
NDUFAF1
DCAF10
SMARCD2
GBA
TATDN3
NSL1
H4C15
H4C14
H3C15
H3C14
H2AC19
H2AC18
EXD1
CHP1
HPCAL1
ZNF207
C17orf75
IER3
FLOT1
FAM227B
DTWD1
WDR36
TRPV2
STX18
CCDC200
SLC5A3
MRPS6
DSTYK
TPT1
CDK5RAP1
IST1
ANKRD40
RGPD1
RGPD2
TRIP4
PCLAF
MAN2C1
TACO1
ZC3HC1
INPP5F
ADAMTS9
RAD54L2
BNIP1
PCID2
CUL4A
NUF2
DCP1A
NME1-NME2
NME1
STX3
MTF2
DPY19L4
INTS12
GSTCD
WDR74
STX5
LRRC37A3
AURKAIP1
GTPBP6
TMEM242
SAR1B
H3C13
H2BC18
TAF12
BSPRY
TMEM256
NLGN2
H2BC21
H2AC21
H2AC20
COMMD2
STAT6
ANP32E
RBBP5
FCGR2A
NKIRAS1
RPL15
SLC24A1
INTS14
AP3S2
TPRKB
H4C12
H4C11
H2BC14
H2AC14
SLC25A51
SIRT4
TEFM
TEX46
KDM1A
EIF2D
NDUFS7
TTC4
PLEKHM3
SF3A3
ACOT7
KANK1
CTNNB1
NFE2L2
ACBD6
LRATD2
SPRY4
H2BC15
H2AC15
ZMPSTE24
FAM180B
NDUFS3
KBTBD4
NDUFC2-KCTD14
NDUFC2
PSMD1
TOMM5
MTBP
MRPL13
RAB13
RPS27
H4C3
H1-6
ERCC1
PHLDA1
GTF2H2C
GTF2H2
ATXN7L2
CYB561D1
SIT1
CCDC107
ARHGEF39
NOTCH2NLC
TTC26
PEX3
ADAT2
SLC20A1
SERPINE2
LAMP1
LSM5
AVL9
PIGL
NCOR1
S100A4
S100A5
S100A6
HMGB1
USPL1
POLR3B
RPS6KA1
TMEM107
HEXIM2
MRPL40
HIRA
RPS6
ASB6
VPS45
NMNAT1
LZIC
SMG8
RPL37
CARD6
ZNF827
PIGC
C1orf105
DDIT4
ID1
CCNL1
RBM28
WWOX
XPA
DTX2
RASSF5
PTPRH
ZER1
MRPL44
WDR70
NUP155
NR1H3
ACP2
BHLHE40
TOR1AIP2
TOR1AIP1
PARP16
DNAJC25-GNG10
DNAJC25
ZNF609
FRG2
TUBGCP3
ANAPC5
SNRPE
GRAMD1C
NPM1
ZBTB45
SLC27A5
ADNP
RPL3
JUNB
DRAP1
C11orf68
JRK
RRP15
BTF3
DERA
RPS5
FXYD3
USP30
MRPL39
NFATC2IP
NUFIP2
PDE8A
GFOD2
OPA1
GTF2H2C_2
CBX5
HNRNPA1
RFXANK
BORCS8
SNTB1
FEM1B
KCTD5
FAM228B
TP53I3
SF3B6
ITGB3BP
EFCAB7
COX16
BTG1
G3BP1
MTOR
H4C9
SLC26A2
H2BC11
H2AC11
AARSD1
NSUN4
SELENOH
RPL9
LIAS
TFAP2B
EEF1A1
PROB1
SPATA24
LDAH
LIG4
ABHD13
SSBP2
CLTC
RCOR3
SAAL1
B3GNT7
SOD2
WTAP
ARL14EP
H3-2
P2RY11
POLR2C
DR1
EIF3G
PRKCE
ZNFX1
ZNF460
CPPED1
DUSP7
MRPL21
IGHMBP2
SLC6A15
MBTPS2
BCL3
MRPS23
TEX9
RFX7
RPS20
S100A2
RPS3
PTCD1
CPSF4
OTUD7B
CA5A
SSBP1
TSEN34
NR4A1
ABHD14B
ABHD14A-ACY1
ABHD14A
ACY1
MPG
RHBDF1
SOX5
TMCO2
SNRPB2
RICTOR
FCRLB
CYP2E1
CDKN2AIPNL
RBM45
PDE11A
MRPL24
ABHD12
AGMO
NNMT
COQ8A
PLXNA1
HEMK1
C3orf18
R3HDM2
INHBC
SNRNP70
BFSP1
PPP6R1
TUBB3
MC1R
LOXL4
ERCC6L2
ATP5MC2
ZSCAN30
S100A14
S100A16
MTMR2
SLC44A1
CGGBP1
MRPL1
C3orf38
ITPRID2
TMEM222
DNAJC14
ACBD3
KCTD3
STAT3
NCSTN
COPA
H4C6
H1-3
H3C6
AMACR
SH2B3
FBXO22
PTPN6
C12orf57
PCIF1
RCAN1
CDCA4
UCHL5
RO60
EEF1AKNMT
MTAP
SLC1A4
PYROXD2
SAGE1
CT45A10
BOD1L1
POLDIP3
STARD13
SEC13
SECISBP2L
NOTCH2NLB
EFCAB2
TYRO3
TOMM20
NDUFA9
AKAP3
PDZD9
MOSMO
KANSL3
FER1L5
ZNF76
SERPINA3
PGBD2
PTPRG
KIF22
WWTR1
MRPL48
MIS12
DERL2
UCN2
PFKFB4
H2BC5
H1-4
TIMP3
ADGRL1
KCNMA1
POLR3F
DZANK1
C16orf89
ALG1
WDR11
CSRP1
RIOK1
CAGE1
MOGS
MRPL53
SQSTM1
RPL32
DDX23
UNK
H3-3B
NAA80
IFRD2
HYAL3
RPS2
RNF151
KMT5B
TBL3
ZC3H6
FEM1A
PDE6D
COPS7B
NOXO1
FRG2C
CHPF2
ABCF2
CALR3
C19orf44
TMEM41A
TIMM21
FBXO15
BRWD1
UBC
NCBP2AS2
NCBP2
LAT
CALCOCO1
UCKL1
CKS2
SECISBP2
ATAD2
SPNS1
TSNAXIP1
PAFAH2
RANBP10
CALM3
PPRC1
PPP5D1
GSPT1
TMEM199
SEBOX
POLDIP2
POLR2J3
NPRL2
HDGF
WDR53
FBXO45
NOTCH2NLA
TMEM115
CYB561D2
GTF3C5
SPATC1L
CALM1
GATB
ARHGAP35
AP2S1
FOXJ3
RASSF1
CLPB
CALR
HEXA
SSNA1
ANAPC2
RBL1
TSN
CCDC88A
DOHH
TOMM22
SLC39A1
CREB3L4
CALM2
LRP6
MRM3
GLOD4
ZSCAN22
CYCS
UNKL
ORMDL3
GSDMB
NOTCH2
MRTO4
EMC1
TCF3
TIMM22
ZNF517
ZNF34
RPL8
COPS8
FZR1
KBTBD7
NOP14
GRK4
CCDC77
UBB
GPBAR1
BTRC
TNFAIP8L2
NUP214
SMN2
SMN1
CNOT1
KMT2D
PEMT
C16orf91
TMEM262
MED23
ENPP3
B4GALNT3
CRTC2
ST3GAL2
CFAP410
TESK2
MMACHC
CCDC163
KPNB1
RHEBL1
POMZP3
SCAF1
RRAS
CHMP4B
SYMPK
FOXA3
CTDP1
ZNF337
BOD1
IPO11
DIMT1
SNX17
ZNF513
EIF2B4
PHB
PSMD3
PNKD
AMD1
TSSC4
AHCYL2
PRCC
WASHC2C
AAMP
TOB2
TCEA2
RAD23A
ING3
HTRA2
DQX1
TSC1
GFI1B
PA2G4
UBE2B
CDKL3
GTF2H3
EIF2B1
DEXI
CLEC16A
PHIP
RPL36
MICOS13
HSD11B1L
ADPGK
ZNF212
MAF1
CYC1
ZFAND2A
SMPD3
THRAP3
WASHC2A
ZMYND10
ARHGEF12
PEX26
UBE2T
PPP1R12B
DYRK1B
NAGPA
EIF4A2
RPL18A
KCTD9
CDCA2
KBTBD6
RPL22
RNF207
PKM
RPS6KB2
PTPRCAP
TTC13
SCNM1
LYSMD1
ZNF789
ATP5MF-PTCD1
ATP5MF
VARS2
GTF2H4
NUDCD1
H2AX
DPAGT1
FAM207A
PERCC1
MED15
ZCCHC4
HIKESHI
KDM5A
ZKSCAN2
TRIAP1
COX6A1
PARL
OSCAR
NDUFA3
ZNF721
PIGG
NXF1
UBE2D3
TMOD4
MCM7
AP4M1
OAZ3
MRPL9
RPS28
NDUFA7
WDR97
ATG14
INVS
ERP44
TMEM127
CIAO1
MAD2L1BP
GTPBP2
PNRC2
SCRIB
RPIA
FAM53C
CDC25C
MRPL20
CCNL2
PANK4
HES5
C8orf33
ZNF444
WDPCP
MDH1
TMTC3
CEP290
RPS26
C1orf159
PPP1R12C
RNASEH2C
KAT5
DNAJC11
FUS
GABARAP
KDM4B
TNFAIP1
IFT20
TRAPPC3
MAP7D1
TMEM79
SMG5
GPAM
DIP2A
RANGAP1
DUS2
DPEP2NB
DDX28
ZNF384
FARSA
CCAR2
C8orf58
CLP1
MRPS15
ZW10
CLDN25
CYP51A1
LOC102724770
DGCR6
BRIX1
SLC35B4
MAPKAPK5
MFN2
MXD4
UBR2
MRPS16
DNAJC9
INTS9
HMBOX1
ATXN2L
CORO7-PAM16
CORO7
DNAJA3
RBM42
SRSF11
ZC3H10
RPL41
TMEM208
LRRC29
ZNF56
NUP153
UBQLN1
PEX14
SCGB1C2
PGBD4
EMC7
TBRG4
ALKBH3
BANP
KAT7
RLF
MDM4
C6orf47
APOM
WBP1
PSMF1
DFFA
CHD2
INO80B
ABRAXAS2
VCP
FANCG
PSMD11
COMMD1
MANF
SLC25A19
EEF1AKMT2
PINX1
MRPS35
SV2A
NSFL1C
UBE2Q1
CHRNB2
UBQLN4
LAMTOR2
CCT4
MRI1
C19orf53
HMGCL
DPP8
NMT1
DCAKD
RBM15B
GHITM
STK25
CCDC146
ZFYVE1
TAF5
FBXW11
GID4
ATPAF2
PBLD
HNRNPH3
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
TRIP12
FBXO36
DPP9
TMEM70
ELOC
CLDN6
AP2M1
RIC8B
PRR5L
LRRC40
SPRYD4
NOC4L
DDX51
TEPSIN
NDUFAF8
SLC33A1
LUC7L
FAM234A
VPS37A
CNOT7
CDKN2C
TMEM88
ZGPAT
ARFRP1
SCGB1C1
ODF3
SPATA25
NEURL2
RPLP0
GCN1
TTC33
SEPTIN9
PHF23
DVL2
ENDOV
DOLPP1
AHCTF1
ZNF420
CIC
ZFYVE19
DNAJC17
PIGU
CTSA
HNRNPAB
ZSWIM1
EIF3F
NTAN1
PYCR3
GFUS
RBM6
FBF1
SP2
RPL29
CSRNP2
SPTLC1
MRPL58
CHCHD1
SUPT5H
RPS16
TCF12
COMMD9
CRBN
LETM1
STAU1
ACOX3
EMILIN1
IDH3B
DNAJB12
PHF12
SUFU
ACTR1A
HMBS
RCL1
CCP110
SMARCAL1
CANT1
LONP1
CATSPERD
TFPT
PRPF31
FAM166A
MON1A
RALBP1
BIRC5
HSP90AB1
PHF13
TRMT44
UBL7
PIK3R3
SNAPC3
SUPV3L1
ARF4
HSP90B1
TRAF7
NDUFV1
GTF2I
OST4
TSC2
NTHL1
CTU1
ZFPL1
CDCA5
PKLR
FDPS
COQ9
CIAPIN1
STPG3
TMA7
CCDC51
ATRIP
DDX49
COPE
DNM1L
MARS1
ARHGAP9
JOSD2
ASPDH
HSPA5
RPS7
DDX1
COG2
ZNF749
GABPB1
SART1
ODF3L2
MADCAM1
ZSWIM8
RCOR1
DCAF8
RPL12
LRSAM1
SNX1
CIAO2A
TOP3B
RAB26
RAB5C
TMEM59
BOLA1
TMED9
B4GALT7
MYBL2
DCAF1
WASHC5
NSMCE2
PNRC1
DESI2
RWDD1
PRSS22
WAPL
ZFYVE28
METTL9
CAND1
TNFRSF12A
THOC6
HCFC1R1
CFAP99
CHCHD3
TRAK2
STRADB
B3GALNT2
IP6K2
CD68
SOX6
C11orf58
PCNA
TMEM230
POLR2E
VCPIP1
C8orf44-SGK3
TLE3
SRSF2
MFSD11
COX7C
POLG
SLC7A6OS
PRMT7
ESYT1
PIK3IP1
GPX4
CCDC59
METTL23
BICD2
ATF4
POLG2
DDX5
PTEN
KLLN
FBXL12
NLK
WDR87
SIPA1L3
FBXO46
TEKT2
ADPRS
IPPK
MCU
SLC3A2
PSMD2
TRMT61B
BCKDK
ZNF500
USP48
SKIV2L
NELFE
PRKACA
RPS19
PABPC1
BRF2
NEK8
SRSF1
THYN1
BECN1
ACAD8
SIRT2
NFKBIB
PIH1D1
ALDH16A1
PSME3
SMIM13
PSMD4
SSR3
UBE3B
RPLP1
STAT1
SERBP1
CAPN10
MUS81
CFL1
TARBP2
MAP3K12
FAM149B1
ECD
ZNF148
TIMM13
GFM1
SLC4A2
CDK5
NDUFB5
MRPL47
CCDC90B
ZC3H3
CMTR1
ASIC3
MYLK4