ChIP-Atlas: Target genes

Potential target genes for CDK9

Query protein: CDK9
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX20230574 | Ishikawa
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
CDK9's Target genes

◢ CDK9: Average

◢ SRX367328: 293

◢ SRX367329: 293

◢ SRX367330: 293

◢ SRX5255096: 293

◢ SRX5255097: 293

◢ SRX5255098: 293

◢ SRX5255099: 293

◢ SRX535453: A-375

◢ SRX535454: A-375

◢ SRX5501657: A-375

◢ SRX5501659: A-375

◢ SRX5501661: A-375

◢ SRX10131662: Bronchial tracheal epithelial cells

◢ SRX10131663: Bronchial tracheal epithelial cells

◢ SRX20436771: DLD-1

◢ SRX20436779: DLD-1

◢ SRX22001291: DLD-1

◢ SRX22001292: DLD-1

◢ SRX22001293: DLD-1

◢ SRX10715331: HCB1

◢ SRX10715344: HCB1

◢ SRX1078843: HCT 116

◢ SRX1078844: HCT 116

◢ SRX1177906: HCT 116

◢ SRX6066502: HCT 116

◢ SRX6066503: HCT 116

◢ SRX6066504: HCT 116

◢ SRX6066505: HCT 116

◢ SRX1013341: HuCCT1

◢ SRX1013342: HuCCT1

◢ SRX20230567: Ishikawa

◢ SRX20230568: Ishikawa

◢ SRX20230569: Ishikawa

◢ SRX20230570: Ishikawa

◢ SRX20230571: Ishikawa

◢ SRX20230572: Ishikawa

◢ SRX20230573: Ishikawa

◣ SRX20230574: Ishikawa

◢ SRX10144542: Kasumi-1

◢ SRX10144543: Kasumi-1

◢ SRX3408659: KELLY

◢ SRX3408661: KELLY

◢ SRX7366779: MCF-7

◢ SRX7366780: MCF-7

◢ SRX7366781: MCF-7

◢ SRX7366782: MCF-7

◢ SRX7366783: MCF-7

◢ SRX7366784: MCF-7

◢ SRX244177: MM.1S

◢ SRX244180: MM.1S

◢ SRX327758: MM.1S

◢ SRX327759: MM.1S

◢ SRX447603: MM.1S

◢ SRX1735799: MOLM-13

◢ SRX1735800: MOLM-13

◢ SRX1637467: MOLT-4

◢ SRX1637469: MOLT-4

◢ SRX1637470: MOLT-4

◢ SRX24723215: MRC-5

◢ SRX24723217: MRC-5

◢ SRX24723219: MRC-5

◢ SRX24723221: MRC-5

◢ SRX2375362: MV-4-11

◢ SRX2375366: MV-4-11

◢ SRX14127531: OCI-AML3

◢ SRX14127532: OCI-AML3

◢ SRX14127543: OCI-AML3

◢ SRX14127544: OCI-AML3

◢ SRX18455086: OCI-AML3

◢ SRX18455087: OCI-AML3

◢ SRX148962: P493-6

◢ SRX148963: P493-6

◢ SRX148964: P493-6

◢ SRX203390: Plasma Cells

◢ SRX203391: Plasma Cells

◢ SRX4023329: T-47D

◢ SRX4023330: T-47D

◢ SRX728779: THP-1

◢ SRX728780: THP-1

◢ SRX9730732: THP-1

◢ SRX9730733: THP-1

◢ SRX9730734: THP-1

◢ SRX9730735: THP-1

◢ CDK9: STRING

CTNNB1
KMT5B
LRP6
MTF2
CLTC
LAMP1
B4GALNT3
CALM1
BRWD1
PKM
CALM3
PPP5D1
NOTCH2NLC
RCL1
MRM3
GLOD4
CCNL1
DDIT4
RASEF
KPNB1
PHIP
ATAD2
ZC3H6
TOB2
CCDC88A
NOTCH2NLA
PNRC2
SOD2
WTAP
ATP8B1
SSNA1
ANAPC2
MRPL21
IGHMBP2
PTEN
KLLN
TMEM41A
NCBP2AS2
NCBP2
STX18
FOXJ3
ATG14
NOTCH2
SCGB1C2
TRIAP1
COX6A1
ZFAND2A
RPS2
RNF151
TBL3
NOXO1
SLC44A2
MXD4
LAT
SPNS1
ZKSCAN2
PNRC1
TCF3
KMT2D
RHEBL1
PIK3IP1
DDX23
CALM2
UBE2B
CDKL3
MRTO4
EMC1
DIP2A
HEXIM2
HMGCL
MOB3A
IZUMO4
HEXA
IST1
WASHC2C
PIK3R3
TMEM222
WDR53
FBXO45
PDE6D
COPS7B
POMZP3
TRIP12
FBXO36
CKS2
SECISBP2
GRHL2
SRP68
ZACN
GALR2
MCM7
AP4M1
VPS37A
CNOT7
UBE2D3
NUP214
SPRED1
MAPKAPK5
SEC13
NAGPA
WASHC2A
SCGB1C1
ODF3
EIF2D
TMEM199
SEBOX
POLDIP2
COPS8
NOTCH2NLB
CCDC77
KDM5A
EEF1AKMT4-ECE2
EEF1AKMT4
ALG3
ADPGK
TSN
MTMR2
ADNP
NOC4L
DDX51
ZNF212
GPAM
IPO11
DIMT1
SRSF11
LRRC40
DOHH
FZR1
ATXN2L
TOMM22
CFAP410
POLR2J3
CYP51A1
NSFL1C
DOLPP1
GTF3C5
TIMM22
GTF2H3
EIF2B1
RPS28
NDUFA7
DNAJC11
PEPD
PHAX
ALDH7A1
ZNF721
PIGG
UBQLN1
STX16
RCOR1
GRHL1
TXN2
DCP1A
PCID2
CUL4A
UBC
SNRNP70
TAF5
PACSIN3
ARFGAP2
IP6K2
ARHGEF12
COQ7
HAGH
FAHD1
DUS2
DPEP2NB
DDX28
TMEM262
ZFPL1
CDCA5
ENDOV
AJUBA
NMNAT1
LZIC
PSMD3
CHCHD1
ZSWIM8
FUT11
OR6B2
NDUFA10
PINX1
RFXANK
BORCS8
SPATC1L
MRPL58
SMAGP
C8orf33
EPN1
RBM42
PRKACA
PEX3
ADAT2
HOXD9
HOXD8
CYCS
CLN8
CLCN7
AURKAIP1
ZBTB7B
LENEP
CANT1
ZSWIM7
TTC19
SPRYD3
CHD2
CRBN
CORO7-PAM16
CORO7
DNAJA3
TAS1R1
NOL9
FUS
SMN2
SMN1
PELP1
ARRB2
DBNDD2
TARBP2
MAP3K12
NPFF
MKNK2
MRPS15
PRSS22
SPTLC1
ACOX3
TRMT44
NDUFV1
TEKT2
ADPRS
ARF4
MRPS35
GTF3C2
GHITM
DYRK1B
MRPL39
PBLD
HNRNPH3
DCAF8
ATG7
USP30
COMMD1
CCT4
COQ9
CIAPIN1
NDUFS7
GET3
KCNIP2
ERCC1
PHF5A
ACO2
NOL10
ECSIT
CNN1
MCCC1
TRMT61B
EIF4A3
FRA10AC1
SPATA25
NEURL2
CTSA
ZSWIM1
FAM180B
NDUFS3
KBTBD4
ZC3H3
TSPYL2
CDKN2C
FAF1
DPP8
UBN1
GLYR1
CHPF2
ABCF2
SMPD4
MZT2B
BCKDK
KAT8
CASC3
SESN3
NXF1
TSR3
GNPTG
ZNRD2
FAM89B
EHBP1L1
FAM207A
HDAC10
TUBGCP6
THOC1
ADK
SLC7A6OS
PRMT7
MANF
RBM15B
TMA7
CCDC51
ATRIP
TMEM88
KDM6B
TAOK2
VPS33A
MRPL4
BRIX1
RANBP2
SCNN1A
LTBR
TCF12
KCTD5
TOP3B
TBRG4
DNAJB12
ZER1
CENPBD1
CDK11B
TIMM21
FBXO15
AP5Z1
SUPV3L1
TPRN
TMEM203
NDOR1
DIABLO
LAD1
PARL
RTF2
ZGPAT
ARFRP1
PALB2
DCTN5
TMEM217
TBC1D22B
SUMF1
PTPN4
OPA1
PMPCA
ENTR1
OAZ1
TSR1
SGSM2
MCU
DPY19L4
TOP2B
ACAD9
TMEM184A
RPS5
CLDN4
SLC39A5
RNF41
NABP2
SPRYD4
RERE
CTDP1
HSP90AB1
HMGB1
USPL1
NBPF1
TET3
DCAF10
NFATC4
COG2
WDR25
WARS1
SULT2B1
SHBG
FXR2
PI4K2A
MORN4
CNP
TSPO
MCAT
LONP1
CATSPERD
CALR
RAD23A
MIDEAS
SLC25A1
NOP14
GRK4
PA2G4
MRPL37
CYB5RL
UBE3B
BRAP
ACAD10
ZBTB45
SLC27A5
PACC1
GTF2I
ACSL3
WDR18
SKA3
MRPL57
RLF
NDUFAB1
PARPBP
NUP37
OAZ3
MRPL9
JMJD1C
PRTG
DCP1B
SRRD
HPS4
TIMM50
C5orf51
PRKCZ
MRPS11
MRPL46
DSTYK
CCDC43
ZNHIT2
FAU
TMEM79
SMG5
TSR2
TOP3A
SMCR8
HIVEP2
PSMD12
MFN2
PLEKHM3
HPS5
GTF2H1
PLEKHH3
CNTNAP1
CCR10
FANCD2
RPLP0
GCN1
PSTK
AMD1
POLR3D
EIF4A2
WASHC5
NSMCE2
WAPL
PDCD4
METTL9
TRIP4
PCLAF
C16orf89
ALG1
SRSF1
AMOTL2
RPL22
RNF207
WDR43
NLK
GNB2
HNRNPAB
UQCRC1
PSPH
CCT6A
TBCB
POLR2I
OVOL3
TMEM128
DDX1
MARCHF8
CMTR1
DENR
LMTK2
BECN1
PSME3
REXO1
MRPS7
MIF4GD
GGA3
ERI1
VAC14
DOK3
DDX41
VDAC2
GXYLT1
FAM227B
DTWD1
RAD54L2
AARS2
RPAIN
NUP88
DCAF1
EEF2
CBWD2
LTO1
GMFB
MRPL20
CCNL2
C19orf48
GATAD2A
PSMF1
RUVBL1
RNPS1
EEFSEC
ZNF789
ATP5MF-PTCD1
ATP5MF
NFKBIZ
YIPF6
H2AX
DPAGT1
HMBS
SRPRA
HNRNPL
TSPAN31
MARCHF9
CDK4
AGAP2
GARS1
YPEL2
EXOSC8
ALG5
RRP7A
PLXNB2
HSP90B1
PEX26
TNKS2
GABPB1
ANKFY1
HBS1L
MON2
MVD
ANKRD36C
TFRC
TULP3
FAM156A
FAM156B
NUP160
TNKS
CACTIN
PPIL4
MAML3
MED9
PGS1
CCT2
FAM149B1
ECD
PKN2
IARS1
ARNTL
SMIM12
USP42
TMEM104
NAT9
TJAP1
QRICH1
TTC4
ATXN2
ANAPC11
ALYREF
MICU2
RPUSD4
FAM118B
FAM133B
HAUS5
CABIN1
CBWD5
CBWD3
TMEM242
SP2
COQ10A
ANKRD52
RAB5IF
HTRA2
DQX1
FAM76B
CEP57
ZNF839
SSU72
C4B_2
C4B
STK19
LOC110384692
DXO
C4A
TAF3
CFAP43
MYBPC3
MACROD1
COA6
RPL6
PTPN11
RPAP3
CDKN2AIPNL
ZFAND5
NUP85
EXOSC3
VCPKMT
TRMU
COMMD2
PCBP2
TSEN15
OSCAR
NDUFA3
USP14
NDUFB8
HIF1AN
HOXD10
IDI1
WDR37
RPLP1
TENT5C
GNAL
CHMP1B
MYBL2
PPT1
UNK
H3-3B
ZNF384
MST1
EDF1
RNASEH2C
KAT5
RAD50
SFSWAP
TMEM9
THRAP3
XPO4
MRPL55
THUMPD1
LRRC59
SLC35B1
EIF3F
VIRMA
RBSN
EIF1
DDX46
SENP5
PTPN6
C12orf57
MYLIP
ATN1
RASGEF1B
MALL
DDX19A
MRPL18
TCP1
KCTD9
CDCA2
CDK5RAP1
NAGK
ELF1
WBP4
POLG
CHUK
SARAF
SRSF5
ZCCHC4
SDHB
LZTS2
TWNK
MRPL43
FAM187A
EFTUD2
CCDC103
DBI
C2orf76
ARF3
HERPUD1
VCP
FANCG
KDM4B
MKS1
ZNF518A
NCL
GADD45G
CCDC86
TMED9
B4GALT7
MZT2A
SPOUT1
RPL13
LUC7L
FAM234A
NAA80
IFRD2
HYAL3
UBB
RNASEH1
WDR6
HUS1
GEMIN7
ZNF296
TBCCD1
DNAJB11
PDCD6IP
TDG
C12orf73
PCCB
SH3YL1
ACP1
ZW10
CLDN25
EIF2B5
MRPS16
DNAJC9
DUSP5
TAX1BP3
EMC6
RCOR3
NUP188
DOLK
REXO4
ADAMTS13
DPP9
ATP6V0D1
AGRP
TIGAR
CUTC
COX15
VAMP1
PPP1CC
SETD1A
ORAI3
TMED2
CEP192
ASH2L
MRPL48
FAM161B
COQ6
NABP1
SNAPC3
MEF2A
ATAD3B
P2RY11
PPAN-P2RY11
PPAN
ANGPTL6
HGS
ARL16
ZNF358
MCOLN1
CAPN10
NBN
UNKL
C16orf91
PERCC1
HEBP2
GNE
MARK3
MTHFD2
SUPT5H
RPS16
UBAP2
CBWD1
UBIAD1
GIPC1
ALKBH3
LRRC37A3
ATAD3A
IDH3B
SNAP47
JMJD4
DRG2
TRA2B
SLC35F5
CRYBG2
IL4I1
NUP62
ATF5
ASNS
C5orf15
SLC25A10
MRPL12
MED4
WFDC3
DNTTIP1
UCP2
SURF6
POLE3
C9orf43
ALAD
LANCL2
UHMK1
TAF1B
CACUL1
EIF5
DHDDS
ABRAXAS2
EEF1AKMT2
AMIGO3
GMPPB
EXT1
WDHD1
SOCS4
PPIA
TDRD9
ATP5MPL
RAB4B
MIA
ID1
ZDHHC16
EXOSC1
XPNPEP3
ST13
DNAJB7
MYH7B
GSS
SLC25A38
AFTPH
FBF1
YEATS4
KANSL2
KDM3B
SART1
ULK2
CRCP
XBP1
ZC3H10
RPL41
ESYT1
ZWILCH
SNAPC5
RPL4
PPP1CA
RAD9A
HEMK1
C3orf18
ING5
POR
ASH1L
PSMC5
FTSJ3
ZSCAN22
NRL
DCAF11
PSMD8
BRMS1
RIN1
B4GAT1
ZCCHC3
C20orf96
RANBP3
ZNF740
CSAD
RCE1
ZNF8
SEC11A
ANKRD36
RBM18
MRRF
NRARP
ATP9B
UMPS
TMEM95
KCTD11
PGBD4
EMC7
ATP6V0C
AMDHD2
ASB6
CLP1
CCDC130
ZDHHC5
CAND1
LEKR1
SDE2
RARS2
ORC3
TIMM44
FLVCR1
H2BC21
H2AC21
H2AC20
SKIV2L
NELFE
WSB1
SLC39A4
CPSF1
RASSF1
TUSC2
HYAL2
TMSB10
LRRC57
HAUS2
CS
CYP11A1
STOML2
PIGO
FAM214B
ZNF292
SUGP1
MAU2
RFX3
DPH7
GID4
ATPAF2
INO80
TMEM127
CIAO1
MIS12
DERL2
DGLUCY
RPS6KA5
SOX12
U2AF1L5
U2AF1
ANXA7
RDH5
ITGA7
BLOC1S1
GSTO2
RWDD1
TFB2M
CNST
MIS18A
MSTO1
DCPS
TSEN54
CASKIN2
LLGL2
EXO5
CBWD6
FBXW2
ETNK1
ZNF594
KPTN
VCL
NUS1
PFKM
SENP1
UBE2V2
MAF1
CYC1
WDR97
GTF2H2C_2
GTF2H2
EXOC2
MAN2C1
MPHOSPH10
MCEE
ZBTB9
SHOX2
RSRC1
SMARCA5
ARAP2
TTC8
TIMM17A
LMOD1
KMT2A
SC5D
SLC35A3
SLC25A37
TIGD6
HMGXB3
TBC1D22A
THAP9
SEC31A
MAN1A2
SMIM13
TMPO
SLC25A26
KRI1
CDKN2D
SLC24A1
INTS14
LRRC47
SMIM41
ATG101
LDHA
SLC39A7
RXRB
RING1
HSD17B8
COL11A2
ZNF574
EMC8
COX4I1
GRIK5
NOP2
KDM4A
RNF103-CHMP3
RMND5A
TAGLN2
RPS6KB2
PTPRCAP
APTX
DNAJA1
ATP6V1C1
NEK2
TEPSIN
NDUFAF8
AGAP3
TMUB1
FASTK
SH3GLB2
MIGA2
TMEM116
ERP29
FAM204A
PNPT1
GOSR2
CHD4
SRP9
ZFAND4
C16orf70
PPP1R1B
STARD3
TRUB1
RTN4RL1