ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX014752 | NB-4
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◣ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

SPG7
IER3
FLOT1
SKI
ID1
PLCB2
NADK
NFE2
TBL2
INAVA
PRAM1
LAT2
LAPTM5
NCOA2
HMGCS1
PPCDC
ZNF414
SKIL
NAA10
ARHGAP4
WBP2
UNC13D
RNPEPL1
DUSP28
ANKMY1
GRAP
LFNG
CD38
MTRNR2L2
MSH3
DHFR
GRAPL
MYO1F
LCOR
NFILZ
C5AR2
RNF166
CTU2
STX1A
GFOD1
NIBAN3
CXXC5
CBX4
SERPINB1
MEF2D
CCL2
HSH2D
MYRF
MMP17
DHRS3
AHNAK
GRK6
TUBA1C
SPATA1
GNG5
RAD23A
CALR
FARSA
MTRNR2L8
PDCD6IP
MIDN
SREBF2
CRTC1
PCNA
CDS2
ARHGAP45
DLG1
RASGRP2
SQSTM1
COL4A2-AS2
DZIP3
CIP2A
TKT
MATN1
MBD6
DDIT3
PDE4B
CSF3R
MAP2K3
SH3BP2
SMUG1
ITGB2
FGR
INSIG1
ARID3B
COX20
MYO1G
RHBDF2
CSK
HIP1
IDH1
UPF3A
ARIH2
SIRPA
CTSD
NUDT4B
P2RY2
RPS6KA1
SPHK2
DBP
DOT1L
KIF21B
TPPP3
GFI1
CENPH
FMNL1
LRTM2
KRI1
CDKN2D
ZC3H12A
IRF1
CCDC88B
ZCCHC24
BMF
ASB2
NFKBIA
HNRNPF
NRL
DCAF11
FDFT1
PKLR
FDPS
ZNF775
RASSF4
DEPP1
MKLN1
TRERF1
S100P
OLIG1
NFIC
KAT6B
SSH3
MRAS
ZFYVE28
CFAP99
NLRP3
TOX2
LYL1
ARHGEF2
ADGRE2
ICAM1
CD79A
BAZ1B
MYBPC3
SULT2B1
PITPNM2
PRKCD
DENND4B
RNF157
RASSF2
MYEOV
SLC25A19
EXOSC4
GPAA1
LIMK1
BBC3
C16orf54
RBM15
TGM3
ADD1
BCL3
SYTL1
C11orf91
RAB11FIP3
KAZALD1
DRAP1
C11orf68
ARHGEF18
CD300A
PSMD3
DNAJB1
EMP3
CCDC114
PKN1
TCAP
PNMT
POC1B-GALNT4
GALNT4
MSMO1
KRAS
TMC8
TMC6
KEAP1
LRPAP1
ZNF740
CSAD
SNX15
CCND3
CD248
SHISAL2A
FADS3
SEC14L1
ATG16L2
S1PR2
CTBP2
RARG
INAFM2
LYST
CCDC57
TMEM104
NAT9
RUNX1
ATP23
HCRT
GHDC
CEBPE
CYBA
AZU1
PRTN3
RAB11FIP1
BHLHE40
SH2B3
EMILIN2
MRPS31
TMEM205
RAB3D
CCDC159
NUP210L
NRG4
METTL26
ARID2
WDR90
SREBF1
PPP2R2D
NINJ2
BIN2
SMARCD2
CCDC102A
ADGRG5
EPM2A
CEBPA
RNASEH2B
TBL1XR1
HUS1
SPDYE9
SPDYE8
SPDYE15
SPDYE13
SPDYE11
NDUFA4
PIK3AP1
PACC1
VSIR
RHOC
SMIM20
AGTRAP
LRMDA
TRIB1
C15orf39
HES1
GALNT9
PDE6B
ZSWIM1
SPATA25
NEURL2
CTSA
CDCA7L
HMGCR
PDE12
RAC2
ITGA5
EVL
CLEC3B
MTRNR2L1
LRP3
LGALS1
NOL12
NPEPL1
H4C12
H4C11
H2BC14
H2AC14
DUSP10
PGAM5
C10orf105
TCTEX1D4
PLK3
BTBD19
RPS6KB2
PTPRCAP
GRK2
CORO1B
SLC35D1
ARL5C
NOL4L
PKM
E2F3
SLC47A1
SLC22A18
SETD1B
NCR3
LTB
LST1
MNT
KCNH2
YARS1
S100PBP
GSE1
FERMT3
ACTL9
NR2C1
P2RX5
RHOF
LHX3
PELATON
IMPDH1
UBE2E1
MTRF1L
ELANE
CFD
TM4SF19
ARHGAP35
AP2S1
VENTX
FCGRT
ALOX5AP
KIAA0513
C5AR1
H6PD
AP5B1
CITED4
KRT8
GYPC
CYP51A1
ARRB1
FASN
PLAU
SH2B1
SPRED2
MAMSTR
ANKRD13D
RAP1GAP2
CCDC174
ZNF595
ASB1
EVA1B
KCNE3
SEPTIN9
SH3BP1
TNFRSF4
TNFRSF18
IGSF10
MGAT4B
TRIM8
CHST13
MID1IP1
SCUBE1
MAP1S
ZNRD2
FAM89B
EHBP1L1
PLIN2
MYBPH
LMTK3
SLC38A10
OAZ1
HSP90AB1
LMLN2
EIF1B
SQLE
HIVEP1
JUP
TANK
RAB37
TRIB3
SLC9A3R1
ANP32E
CASTOR1
GMEB2
ADGRG3
DUS1L
SOAT2
IGFBP6
GPCPD1
NCF1
SPDYE12P
B4GALT1
ZNF746
RBBP5
USP3
UPP1
GBE1
SMCHD1
NFKBID
TYROBP
HCST
PARP9
DTX3L
MXI1
PARP15
RAPGEF1
UROD
HECTD3
MLXIPL
STN1
WDR43
ARL4A
CD1D
IFNGR1
FAM131B
ZYX
AEBP1
PKN2
IGF2BP3
STRA6
ATF3
ZASP
SAP25
PIKFYVE
NUFIP2
ANKRD10
PDP2
EXTL1
PPP1R27
MCRIP1
GPR132
ADPRHL1
TPRA1
MCM2
H4C15
H4C14
H3C15
H3C14
PEAK3
MAP3K8
PIWIL4
RNF103-CHMP3
RMND5A
PWWP2B
IL1RL1
TAGLN2
RCAN1
TBC1D10C
PPP1CA
ATP6V0D1
AGRP
MSRB1
SMG6
UMODL1
LPO
CTTN
ZDHHC19
SLC51A
SLC12A6
SLC1A5
NUTM1
NOP10
C12orf75
ETFBKMT
SLC16A3
SCAMP4
ADAT3
ABHD17A
GRIFIN
DENND2D
TNFRSF10B
SIPA1
LY6E
NFIL3
PIK3CD
TLR9
CPSF4L
SIGIRR
CTDSP1
NUP210
PLEK
RHBDF1
MPG
GTF3A
CA11
TBXA2R
PPP2R5B
ATG2A
ICAM3
RAVER1
GPR160
GPR146
SELPLG
MINDY2
KLF16
NR4A1
TAMALIN
RARB
DUX4
ADAP1
PLEKHO2
PDE8A
CDK13
SH2B2
ADRM1
SEC11A
F11R
C3orf86
ZC3H4
PPIAL4F
PPIAL4E
PPIAL4D
TRAPPC5
MCEMP1
TCF3
S1PR4
NCLN
FXYD2
DSCAML1
NKIRAS1
NR1D2
SNX33
H4C9
H2BC12
H2AC12
H2BC11
H2AC11
GMIP
MTRNR2L9
OPA1
TOP1MT
GLIPR1L1
CAPS2
PDCD4
BAZ2A
BCAP31
ABCD1
CYB561D1
ATXN7L2
LRPPRC
STX10
IER2
LDLR
RCOR2
KIF5C
DENND6A
UBALD2
DCTN4
S100A2
TMEM101
CLIC1
MSH5
DDAH2
ZNF217
PCYT1A
SCD
IQGAP2
ARID3A
KISS1R
AXDND1
FBXO41
EGR4
ACACA
FOXK1
TRPV4
CTCF
DGAT2
EFHD2
KIFC3
LOC388282
ATP2A3
KCNAB2
KLF9
CD82
TSPAN32
C11orf21
PPARG
PCNX3
MAP3K11
OSM
WNT1
TXNRD1
WNT10B
IFT52
FLNA
TRPM2
TREM1
RBKS
BABAM2
UBC
GPATCH8
KBTBD2
MVK
SLC17A9
SPDYE5
POM121C
MUC5AC
DIO1
P2RX1
MYADM
KLHL24
SH2D3C
KCNIP1
CDK9
LY6K
CCDC154
PPP1R18
NRM
RGPD1
RGPD2
FOS
DHX16
SLC12A7
STEAP3
IFITM3
CIRBP
PHF19
CLTC
NCOA4
HRH1
ZDHHC17
CFAP100
SPDYE17
CBFA2T3
NAMPT
ZBTB7A
PDLIM7
AVPR2
SCGB1C2
SYNGR4
MTHFR
CLCN6
NDRG2
ARHGEF40
ANPEP
CCDC9
GNG4
PARL
VASP
LZTS2
IRF5
PRNP
ASIC3
ATP13A2
IRF2BP1
FGGY
LONRF3
PLEKHO1
CCL20
SPDYE16
CHPT1
MICAL1
EIF4A3
TRIM11
FAM180B
PLEKHA8
CRYBG1
TMEM91
BCL2A1
TRIM17
C1QTNF4
MPO
KLHL36
VPS72
PIP5K1A
BPI
RHOQ
ATP6V1E2
VOPP1
OGFOD2
ARL6IP4
ABCB9
VPS9D1
ICAM5
ICAM4
DUSP7
FCN1
SP1
CALHM3
SSBP4
TAC4
ISYNA1
MTF2
TBC1D14
PTPN6
C12orf57
PMPCB
EPN1
UBE2J1
PTCD1
CPSF4
ATR
TOR4A
ZGPAT
ARFRP1
ANK1
TAF1A
RAB27A
LINGO1
HBP1
B3GNTL1
H4C13
H3C11
H2AC16
H1-5
QPRT
B9D1
MFAP4
MAPK7
COPS7A
TEX2
TYK2
MRI1
C19orf53
B3GNT5
QRICH1
OAF
HSPH1
GALNT7
FRA10AC1
ZFP36
PLEKHG2
LPCAT3
STK35
ZNF584
RHOH
NOG
ADM
CRISPLD2
VIPR2
BORCS7
RHEBL1
KMT2D
CAMP
FSCN1
CCDC9B
STK3
PPRC1
AMY2A
TFAP2A
OSR2
LIMD2
ZSWIM9
LIG1
PIP4P2
ENG
CPQ
UBE2H
NUDT15
H3C4
H4C4
SLC9A5
FHOD1
H2BC6
PLEKHA2
GOLIM4
CPXM1
RDH12
RDH11
TIMP2
MRPS15
TNFRSF1B
ITPRIP
MYO18A
LYN
FUT1
DOCK2
RASIP1
IZUMO1
ATXN1
LZTFL1
PTEN
KLLN
CPNE5
SPN
NFAM1
SRF
MAPK12
ADGRG1
NTSR1
LRRK2
KANSL3
FER1L5
BANP
IL32
ITPRIPL2
ZNF846
GPR108
DGKZ
C3
PSAP
NOTCH3
RNF149
ARMC12
FKBP5
EPB41L1
EP400
TNFRSF10A
GTF2IRD1
CCDC59
ZNF76
CDKN1A
TTYH3
FCGR3A
FRAT1
MYC
HAND2
RIOK3
EPS15
LMNA
SKIDA1
MLLT10
SNUPN
CACNA2D4
POLR2E
GPX4
MIDEAS
TCIRG1
NDUFS8
HDAC7
SIRT7
RELT
MAFG
FBXO6
FBXO44
FBXO2
FCRLB
ERCC1
HSP90AA1
SULT6B1
CEBPZOS
MARCHF2
NR4A3
PFKFB4
UCN2
LSG1
TNFSF14
CUL2
HOXA3
HOXA4
HOXA5
ZDHHC4
PTP4A2
NAA38
DYRK1A
TMEM88
CYB5D1
DHX37
BRI3BP
DUSP6
NAA80
HYAL3
IFRD2
DRC7
KCNE1
FTL
BAX
DMAP1
KLF10
PLXNB2
MIEF1
CSPG4
NDUFS7
ING1
CARS2
SPRING1
RNFT2
MAP1LC3B2
ALDH2
TMIGD3
SC5D
TXNDC5
NIT2
UNC13A
ADORA3
NFIA
INKA2
RXRA
LTA4H
GRAMD1C
UCP2
CDCA4
VDR
HAPLN4
NUBP1
SRP14
GCHFR
UBR4
GDPGP1
CIB1
FAM214B
APBB1IP
UHRF2
C15orf62
PIM3
FBRSL1
XCR1
GABRR2
INTS1
ATXN2
DHX33
PEX5
ATP11A
AFF1
SBF1
ANXA4
YWHAQ
INPPL1
FOLR2
EVPLL
ITGAL
UNC45A
HDDC3
CNOT2
H2BC15
H2AC15
CLIC4
CHD9
NYX
SH3BGRL3
CDC42EP4
SIGLEC11
ZNF317
RBPJ
MFN2
MED21
PPIF
TM7SF3
HSD17B7
RWDD1
KMT5A
POLG
TMBIM6
AHCYL2
SREK1IP1
CWC27
TSPOAP1
TP53I11
MLEC
DNAJB2
TPD52L2
ABHD16B
ZNRF2
CCL5
DAZAP1
BCAT1
FCGR1A
PRSS57
PPIAL4C
PNKD
CCNL1
PSMF1
STING1
NOTCH1
SIGLEC7
TRIM46
KRTCAP2
TNFAIP2
DAGLB
BCKDK
SASH3
PGLS
RAB43
SLC39A11
ZNF254
LIPM
SMAD3
ENO1
ARHGAP27
TBP
PSMB1
COMMD4
SETDB1
SCAP
NRROS
ETFB
NKG7
CLDND2
FZD5
MAPK8
DNAJB12
ADAM8
TRIM14
CCL3L3
CCL3L1
CCL3
AQP9
PARP2
CYTH3
CCNB1IP1
SLC25A15
HDGF
FGD3
B2M
MRPL24
KDM3B
PHETA1
MRPS23
HMGN4
VGLL4
UHRF1
ARRDC5
ZNF750
MTRNR2L10
FOXP1
HPCAL1
P2RY11
EIF3G
ANKRD33B
CHSY1
FFAR2
OGA
DYNC1I2
VAV1
SH2D3A