ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584313 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◣ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

PSMD1
DUX4
IPO13
RABL2A
RWDD1
RABL2B
VDAC2
CACTIN
ZNF335
MAPKAPK5
TAOK3
SUDS3
NME6
POLR3F
DZANK1
DYNC1LI2
HSPA9
NUP205
NUP85
VTI1B
EXOSC5
BCKDHA
RPL21
C19orf48
POLR2E
GPX4
FAM187A
EFTUD2
CCDC103
S1PR4
NCLN
TBCK
AIMP1
PSMG2
CEP76
NVL
STAM2
ZRANB2
GOSR2
SRD5A1
FARSB
MRPS7
MIF4GD
GGA3
NNAT
BLCAP
LYRM4
FARS2
PES1
CAPRIN1
ATP5MG
DCTN1
TSNAX
REXO1
STAM
FRG2C
SEC61B
ALG2
ACTR10
SKP1
UPF2
SUPV3L1
PNO1
RPS23
ATP6AP1L
GOLGA5
RABGGTB
DPH6
HADHB
HADHA
LOC102724770
DGCR6
RPL35A
IQCG
LMLN
TTC8
UFM1
RBBP5
ZNF576
IRGQ
PSMD12
PI4KB
VARS1
SLC35B1
ICE1
USP1
NDUFA4
ADK
AP3M1
PAK1IP1
C6orf52
SMC2
SFI1
EIF4ENIF1
ANAPC7
COX7A2L
HOXA3
HOXA4
ZNF503
TSN
SART3
ISCU
MRPS5
TMED1
PDAP1
BUD31
RPS27A
CLHC1
SELENOF
HS2ST1
PROSER1
NHLRC3
PCBP1
FRG2
PIP4P1
OSGEP
APEX1
C6orf47
APOM
BAG6
SF3B3
COG4
FAM104A
C17orf80
UBE2I
RPS12
TLE1
HSPA1B
NFKBIL1
DDX39B
ATP6V1G2
DNAJB7
XPNPEP3
ST13
RBKS
BABAM2
PAF1
ARF1
DMRT3
RPS29
LRR1
RND3
ANKLE2
TM9SF1
IPO4
BICRA
COMMD1
CCT4
EIF2S3
NEUROD1
ABCG2
NFIA
PIN4
KITLG
PLAGL1
POU2F2
WNT1
SYNGR4
CALCOCO1
ARHGAP11A-SCG5
ARHGAP11A
PARP11
PAX3
ITGB6
OR6B2
NDUFA10
LRATD2
MSX1
RAB11FIP1
PDE1A
RPL7
RDH10
SUCLG1
RHBDD3
EWSR1
MUC20
PTGES2
ARHGAP22
HOXA1
HOXA2
PPP1R1B
NCOR2
NOTCH2
TAF9
RAD17
AK6
TMEM120B
SEC11C
GTF3C4
DDX31
FGD3
CITED2
GADD45GIP1
GRIK2
RPL34
GJA8
ALDH1A2
LZTS1
MRPL3
G6PC2
EVX2
NRARP
ZFHX4
LAMA4
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
FZD8
ICMT
HES3
KCNK16
GUCY2C
PDE1B
TLE4
OAZ3
MRPL9
NEUROG1
MRTO4
EMC1
SOGA3
C1orf105
USP17L21
USP17L20
USP17L12
USP17L22
HES1
PKHD1
DENND11
WEE2
ZFHX2
THTPA
AP1G2
CCDC200
CDC73
MYH2
STK36
RNF25
MYRF
SPRR1A
TMEM70
ELOC
CDPF1
HOXA5
SKIL
SNAPC1
PIGX
CEP19
BRINP1
FOXP2
COL17A1
SH3BP5
TMEM72
DDAH1
HOXB3
CCN1
HOXB4
MEF2C
C10orf90
CNPY2
GSX2
PAM
RPEL1
MTRF1
FOXB2
CHD7
QPRT
PALM2AKAP2
NEUROG2
TMEM242
NR2F1
MSX2
LRIG3
CABP7
GLRA1
FGF19
RPN1
AGMO
SPTBN1
ACSS3
PHC2
ARHGAP24
VAV3
HDAC9
VIM
TRNP1
SMARCA2
ANK2
SGPP2
PIPOX
DHRS3
UNCX
SLA
CCDC9
SEMA4D
ZNF585B
ZNF383
SPCS1
GLT8D1
PRDM13
MYLK4
NPAS4
PDE4DIP
CLDN11
SMUG1
TRIL
PDE6B
FREM1
DPYD
LAMB4
TRIM65
MRPL38
SERINC5
OTUD1
ZNF608
HMX2
BUB3
GORAB
TRABD2B
ATOH8
ASXL3
RARB
ID1
DAPL1
MED4
CD69
AXDND1
USP17L13
USP17L11
USP17L18
USP17L10
CBFA2T2
TLE3
VEZT
FGD6
BNIP3
PRM3
PRM2
PRM1
TNP2
TPO
IKBKB
SH3RF2
FABP7
SMPDL3A
USP17L17
USP17L15
SEC22B
BECN2
GALNTL6
SLC2A9
GMPR
C5orf63
RAI14
GNG12
KCNK10
CTXN3
KBTBD8
BTBD1
HOXB5
PDHX
APIP
RIMKLB
GAS2L3
ETS1
HOXC6
METRN
ANTKMT
HOXC5
GPSM1
HSPA6
ATP1A4
WDPCP
PCBD2
SCGB1A1
ATP2C2
FMN1
CS
SDK2
INSC
SLC26A2
PCDH1
REC8
MRGPRX3
LRRC10
SLAMF8
TRMT9B
TANC1
DLG2
ALDH1B1
GALNT14
NELFA
FRMD7
CEBPD
RPH3A
BCHE
ID2
CEP41
ZGPAT
ARFRP1
FMN2
GFRA1
HMX3
MTRNR2L1
TSSK4
NEUROG3
MTRNR2L2
MSH3
DHFR
MTRNR2L8
PDE12
DUSP29
SOAT2
IGFBP6
CDX2
SP2
EAPP
MBTPS1
RARA
ARID3B
LARP7
SPATC1L
CYP26A1
UNKL
ARHGAP10
NFE2
SYBU
C16orf91
PMAIP1
IER3
FLOT1
CCDC33
H2BU1
H2AW
TMEM107
DUSP6
NDUFS7
ZSWIM1
SPATA25
NEURL2
ZNF775
ZP4
KCNN4
SH2B1
ATOH1
KAT6B
IGFBP2
DPP9
TBL2
CTSA
ERCC1
USP29
GPR108
TPM1
BHLHE40
LEFTY2
BBS9
PCGF1
TRIP10
LBX1
AQP6
CDH18
FOXP1
ERRFI1
LBX2
VSIR
WDR74
STX5
PHOX2B
MAMDC2
HOXB1
TTI2
METTL24
LIN28A
ST18
RUNX1T1
TBX3
ARHGDIA
TLE2
INSM1
ASB2
ZNF746
P4HB
PPP1R35
NBEAL2
CCDC12
CDCA7L
TEPSIN
NDUFAF8
FAM222A
TAF12
LPIN1
DNM2
MLEC
ARID3C
TPRA1
PAH
MCM2
SP1
SLC39A7
RXRB
HSD17B8
TBX2
COL23A1
ALKBH5
NHS
S100A10
URM1
FBXO31
DLL4
ADNP2
NCOA7
HOXC4
MINDY2
HPD
SP5
PRUNE2
TNFRSF19
MAP1LC3B
HUS1
SYTL3
CRABP2
PPP6R3
FILIP1L
ANKRD28
DCTN3
H2BC17
H2AC17
RPS10-NUDT3
RPS10
COL11A2
SYNPO
PDE4D
EXOC2
XKR7
FRA10AC1
PDHB
RPL22
RNF207
RAB5B
PMEL
CDK2
FXYD2
HPCAL1
E4F1
SMAD3
CNTN1
KIF21B
CCNDBP1
ZFHX3
MRPL34
DDA1
ABHD8
PKDCC
BAZ2A
CLGN
STX18
ARHGEF28
CHN2
KDM6B
CAMTA1
FRYL
STAP2
ID3
CPVL
KANSL3
FER1L5
OTUD7B
ARSG
DLX4
BAIAP2
VIP
PPFIBP2
DYNLT1
DONSON
DOLPP1
GPC6
KDM2B
ARRDC4
ASB6
RPS24
POLR3A
PDZRN3
PGK1
ATP5F1B
ABLIM3
SEPTIN9
ATF6
CERCAM
MAB21L2
ETAA1
POR
CERK
POP5
RBPJ
CADM3
SIRT4
EXOSC4
SH3BP2
JUP
MFSD10
UPF3A
PRRX1
MRPL20
PPCDC
RARG
PC
NINJ2
RHBDD1
BCL3
KATNB1
PANK2
PTK2B
SQSTM1
KCNAB2
SHC1
TMEM101
TRIB1
CCDC174
RING1
MEIS2
SRSF11
ABHD2
CCNL2
ABCC10
IRF2BP2
SREBF1
MBNL3
ADAP1
ZNF687
SMARCD2
BMF
RFX1
CLCN3
SMIM28
MTMR4
LFNG
TMEM9
SMG6
KAZALD1
GATA4
ATP1A1
MALRD1
DACT2
GPCPD1
NBPF1
ZFP36
PLEKHG2
CNOT2
CBX5
MIDEAS
TRIM46
KRTCAP2
SLX1B
SLX1A
BOLA2B
BOLA2
NRL
C9orf92
ZNF367
PCGF2
RNF34
TOP2A
PRKAG2
CALM2
RASSF5
SPG7
PSPN
ALKBH7
TLX2
SOCS3
NOL4L
EIF1B
HSPA1L
HSPA1A
HEXIM2
INHBE
GLI1
ANKHD1-EIF4EBP3
ANKHD1
PPP1R18
NRM
MRPS31
HNRNPA2B1
CBX3
LRRC40
FURIN
NUBP1
THOP1
SGTA
SACM1L
RABGAP1L
KAT7
TRAF7
ANGPTL4
DLC1
RHOQ
ATP6V1E2
PCNA
ITGAV
ECEL1
STAT1
CRYAA2
CRYAA
BAHCC1
NFKBIA
RPLP1
ARHGAP30
IQSEC3
RAB26
POLDIP3
NR2F6
RNF103-CHMP3
RMND5A
HNMT
DNAH1
DCAF11
ZFAND2A
TRIM26
SSBP4
ZNF740
CSAD
PXYLP1
PRDM10
NAV3
CDS2
ARRDC2
ASCL1
GTF3A
OSBP
NLK
ATP1B1
GPR20
SHF
EIF2AK3
SKI
ZNF77
IL17RD
STIP1
RPS7
CSF3R
HMGCS1
PSMD6
SOD2
AHDC1
SERPINE1
STARD13
ART1
DSCAML1
TCP10L
TRIM7
HAND1
RGS3
SLC25A25
SEPTIN4
ZC3H3
RAB37
ECE1
MDM2
GADD45G
SLC45A4
RAB11B
CAPG
ME3
KNL1
BRMS1
RBBP7
AGO1
ACYP1
CAPNS2
TRIB3
GADD45A
G3BP1
ZNF564
MYBPC3
LPCAT3
KMT5A
NCOA2
BORCS6
EVI5L
GOT1
SPRED2
KDM8
RTN4
MACROH2A1
CCL26
EMP3
FTL
SOCS2
ELL
SH2D6
CBX4
RGS12
HNRNPD
LMO4
RBM15
STX1A
TNFAIP2
POLG
COL21A1
CTSW
ADM
SLC35E2B
FAM107B
SMIM20
PDP2
TPCN1
TCTEX1D4
SLC7A5
PLK3
BTBD19
CRLS1
ZNF827
SYNJ2
GRSF1
B4GAT1
METTL3
LIG3
LMOD1
EVA1A
CORO1A
TCF7L2
HTR1F
MYRIP
MTF2
MBD6
DDIT3
MIDN
PNKD
METTL11B
RBFOX2
MNT
MYEOV
ZC2HC1C
CPSF4L
KBTBD11
MOB3A
IZUMO4
TRIM2
GLRX5
NEK1
CP
CLDN9
PKN2
FST
DAGLB
JUNB
RFX2
GMEB2
WSB2
SLC6A12
SCHIP1
HOXD3
LCK
FAM167B
TMEM94
PYGL
CSNK1D
NAIF1
PLA2G2A
BFSP1
TUBA1C
CNKSR3
IFI16
ARHGEF3
UBE2F
CCDC43
TMEM212
SHB
ETF1
ARAP1
KDM3A
INAVA
SORL1
NCDN
KIAA0319L
PRMT5
NEK3
MRPS28
EIF3D
TLN1
SLC30A4
CREB3
ARID5A
NKX1-1
IGFBP7
CNPY3
NKD1
TESC
MPND
UNC5A
NAV2
SH3YL1
ACP1
FLAD1
CKS1B
SLC19A1
H3C12
KIAA1549
ABCA4
SH3BP1
FOXA3
PCM1
SCARB1
BCAR3
DIABLO
PPFIBP1
CMSS1
TACC1
TXNRD1
SPOCK2
LINGO1
ARID4A
SORBS2
KLF16
FGR
LMNA
ZBTB18
SIT1
H4C15
H4C14
H3C15
H3C14
NAGLU
PLEC
UBC
CHODL
LRRC45
CENPX
CYP51A1
COX5A
MRS2
SERPINB1
RGS5
MMD
RNF144A
HNRNPL
METTL26
SNCG
MMRN2
ENPP3
PGP
SEC14L1
NRCAM
LRCH4
FBXO24
LNPEP
INKA2
CACNA1D
MYO1B
SEBOX
ARID2
DMD
HMGB1
CHGA
UACA
BAX
NCS1
RXRA
RNPEPL1
DUSP28
ANKMY1
NR1D1
CIC
FRMD3
NAA10
ARHGAP4
INAFM2
BOLA2-SMG1P6
RPS6KA1
RNF149
UGP2
NRXN1
ATP6V1G3
CSRNP1
PECAM1
ETFBKMT
ITGB2
KMT2A
LOC102724265
CAND1
ALOX5AP
LIMA1
FRAT2
KIF3B
CPT1A
SMIM22
ROGDI
DNAJB3
SCNN1A
LTBR
CCDC38
AMDHD1
OTX1
KIAA0319
IL23R