ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX21236745 | IMR-32
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◣ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

FAM187A
EFTUD2
CCDC103
RWDD1
NUP85
GOSR2
MRPS7
MIF4GD
GGA3
TAOK3
SUDS3
HADHB
HADHA
NVL
PSMD12
RABL2A
RABL2B
ZNF335
POLR3F
DZANK1
SLC35B1
RBBP5
CACTIN
MAPKAPK5
NNAT
BLCAP
TSN
RPS12
TSNAX
POLR2E
GPX4
NME6
ZRANB2
PSMD1
VDAC2
NUP205
USP29
VTI1B
PNO1
PAK1IP1
C6orf52
S1PR4
NCLN
STAM
RPL21
RABGGTB
VARS1
EXOSC5
BCKDHA
COX7A2L
LYRM4
FARS2
SART3
ISCU
REXO1
OAZ3
MRPL9
DCTN1
RPS23
ATP6AP1L
FAM104A
C17orf80
HSPA9
SEC61B
ALG2
ANAPC7
TTC8
PI4KB
C19orf48
UPF2
PSMG2
CEP76
RPS27A
CLHC1
TBCK
AIMP1
CAPRIN1
DNAJB7
XPNPEP3
ST13
DYNC1LI2
SUPV3L1
DPH6
RPL35A
IQCG
LMLN
ZNF576
IRGQ
C6orf47
APOM
BAG6
PES1
UFM1
SELENOF
HS2ST1
LOC102724770
DGCR6
MRPS5
HSPA1B
DUX4
COMMD1
CCT4
STAM2
SMC2
ACTR10
ATP5MG
PAF1
ETAA1
SRD5A1
FARSB
NDUFA4
IPO13
PCBP1
GOLGA5
TMEM101
SUCLG1
PROSER1
NHLRC3
CD24
USP1
RPN1
TMED1
SFI1
EIF4ENIF1
SKP1
RPS29
LRR1
ATP6V1G3
NFKBIL1
DDX39B
ATP6V1G2
GMEB2
CRYBG3
CDC73
ICE1
UNKL
C16orf91
ADK
AP3M1
OR6B2
NDUFA10
PDAP1
BUD31
MTRNR2L8
GORAB
PIN4
RBKS
BABAM2
TM9SF1
IPO4
TSSK4
SLC35A3
PIP4P1
OSGEP
APEX1
UBE2I
MMD
NRXN1
GTF3C4
DDX31
TAF9
RAD17
AK6
RPS10-NUDT3
RPS10
DUSP12
SF3B3
COG4
MRTO4
EMC1
MLEC
STK36
RNF25
GADD45GIP1
CDON
BICRA
SEC11C
MYCN
TRIM65
MRPL38
PCGF3
PCGF1
LBX2
TLX2
AXDND1
SRSF11
LRRC40
UBAP2
PTGES2
KIF3B
ANO3
METTL24
ARHGAP11A-SCG5
ARHGAP11A
GAMT
IFI44
LIMA1
RPL7
RDH10
ZBTB18
XXYLT1
BDNF
NPTN
RUNX1T1
CNPY2
BAHCC1
APBA1
ATP1A1
PRRT2
MAZ
PAGR1
MVP
CCDC43
WRAP53
TP53
RPS24
POLR3A
PLSCR5
NFATC4
CSRNP3
PKN2
GBA
KREMEN1
SUN1
CDH2
YTHDF2
CBX5
SNRPD2
QPCTL
F7
EIF2S3
ZNF585B
ZNF383
MAMDC2
KIAA0319
CHD8
RFX8
CD79A
DHX8
ARHGEF1
TLE4
LAYN
CHN1
CBFA2T2
EIF4H
PHOX2B
ALKBH5
RPL36
MICOS13
HSD11B1L
ANK3
NELFA
LRCOL1
P2RX2
TLE3
TIAM2
RABGAP1L
IGFBPL1
CDH7
EGFLAM
NBEA
MAB21L1
SPCS1
GLT8D1
EYS
KAT7
DLC1
CDK15
HSPE1-MOB4
HSPE1
HSPD1
MYLIP
MGARP
EAPP
CERK
TSHZ3
DBNDD1
AFF3
HEPACAM2
VPS50
SSH1
TOMM20
SLC17A6
CS
SMLR1
MAST1
RTBDN
PTPRO
NAV2
GK2
TANC1
CAPRIN2
AKNAD1
PDHX
APIP
RRM2
ADCYAP1
NRP1
GGA1
OPRM1
MAN2C1
HUS1
RBM25
FAM162A
CCDC58
IZUMO1R
DYRK1B
KIAA1549
RNASEK
ALOX12
LRRC43
IL31
FOXP2
H3Y2
TSHR
WDR74
STX5
IDI1
NHLH2
ZNF217
RARA
TBC1D16
CCDC40
BAZ2B
SPATA4
RARB
GRK5
FRMD6
CTDSP1
SERTAD3
MGP
CLTC
HSD17B1
COASY
DENND1B
TNFRSF19
CAPNS2
KDM3A
LY75-CD302
LY75
DNASE1L2
ECI1
CACHD1
FRG2C
ANKLE2
ACOT11
DDX1
AQP6
SH2B1
HNRNPA2B1
CBX3
SYBU
CMTR1
MTMR14
DOCK10
WDR7
DACT1
FGD4
CCDC200
ACVR1C
COL23A1
GRIP1
UROD
HECTD3
ONECUT3
CEP120
KRTAP3-2
KRTAP3-3
FRZB
KRT40
PPP1R35
ZCWPW1
MEPCE
EFCAB2
ZNF608
GATAD2A
PRDM10
LIG3
SLC26A1
IDUA
OMD
NEUROD1
TRIM2
PIH1D1
ALDH16A1
RNF34
MTRNR2L1
SEBOX
PHRF1
EML2
SARM1
VTN
TIMM10
SMTNL1
PRADC1
CCT7
MLF2
SATB1
LRRC56
HRAS
PTPN3
TMEM38A
SMIM7
ZSWIM1
SPATA25
NEURL2
CTSA
DGKZ
UQCRC2
BAIAP2
RAD23A
CALR
FARSA
PELI2
C8orf48
PARP16
TCHP
B3GNT3
TCP1
MRPL18
NCAPG
TMEM60
PHTF2
CLASP2
BMF
PTPN6
C12orf57
ABCA12
FLRT3
GULP1
NRG1
TBPL1
TMEM107
STAT3
RAD52
C1orf185
PFKP
ZNF444
CDYL
SEMA6D
NEFH
TRIM67
TSPAN11
BRWD1
MAD2L2
DRAXIN
NAP1L1
PDE6B
MBD6
DDIT3
ACVR1
R3HCC1
SLC25A25
NAIF1
MDM1
EBF3
ELAVL4
FAM43A
RUNDC3A
ZBED9
IER5
MTRNR2L2
MSH3
DHFR
CIPC
SIRT4
SMIM41
ATG101
SMAD5
C9orf92
THBS4
MTX3
LDLRAD4
PAXBP1
NOP14
GRK4
EFNB1
TLN1
CREB3
PARP2
CCNB1IP1
SLC22A15
PHB
MMP20
HTR1F
H4C15
H4C14
H3C15
H3C14
ZNF331
CYTH3
ITPR2
SCHIP1
ID2
BRD4
RAB27B
GTF3A
PHIP
PKIA
JDP2
TCF4
PRKCSH
CCDC151
RTP5
SLC6A2
RFTN1
ZNF503
FRG2
NEUROG2
ZGPAT
ARFRP1
PPP1R1B
NEUROG3
HES1
HOXA3
ARF1
ICMT
HES3
HOXA4
PDE12
WNT1
HOXA1
ID1
DUSP29
SOAT2
IGFBP6
CDX2
SP2
MBTPS1
SKIL
DHRS3
ARID3B
GLRA1
LARP7
SPATC1L
CYP26A1
VEZT
FGD6
SNAPC1
FZD8
ARHGAP10
NFE2
NR2F1
PLAGL1
PMAIP1
G6PC2
IER3
FLOT1
CCDC33
HOXA2
PALM2AKAP2
H2BU1
H2AW
DUSP6
NDUFS7
ZNF775
MUC20
ZP4
SERINC5
KCNN4
NEUROG1
ATOH1
RAB11FIP1
KAT6B
IGFBP2
DPP9
LZTS1
TBL2
ERCC1
ZFHX4
BNIP3
GPR108
TPM1
BHLHE40
LEFTY2
BBS9
TRIP10
LBX1
CDH18
FOXP1
ERRFI1
DDAH1
VSIR
HOXB1
TTI2
LIN28A
ST18
HOXA5
TBX3
ARHGDIA
PHC2
TLE2
INSM1
ASB2
ETS1
ZNF746
P4HB
NBEAL2
CCDC12
CDCA7L
TEPSIN
NDUFAF8
FAM222A
PCBD2
TAF12
LPIN1
DNM2
DAPL1
ARHGAP24
ARID3C
FGF19
TPRA1
PAH
MCM2
CITED2
SP1
SLC39A7
RXRB
HSD17B8
TBX2
HOXB3
NHS
S100A10
URM1
FBXO31
NPAS4
DLL4
RHBDD3
EWSR1
ADNP2
NCOA7
HOXC4
MINDY2
HPD
SP5
PRUNE2
MAP1LC3B
SYTL3
CRABP2
PPP6R3
FILIP1L
ANKRD28
DCTN3
H2BC17
H2AC17
COL11A2
TMEM70
ELOC
UNCX
SYNPO
CCN1
PDE4D
EXOC2
XKR7
FRA10AC1
PDHB
CALCOCO1
RPL22
RNF207
RAB5B
PMEL
CDK2
FXYD2
HPCAL1
E4F1
SMAD3
CNTN1
KIF21B
CCNDBP1
ZFHX3
ANK2
MRPL34
DDA1
ABHD8
PKDCC
NFIA
BAZ2A
CLGN
STX18
ARHGEF28
CHN2
HOXC6
FABP7
KDM6B
CAMTA1
FRYL
TLE1
STAP2
ITGB6
ID3
CPVL
KANSL3
FER1L5
OTUD7B
TMEM120B
ARSG
TMEM242
DLX4
VIP
PPFIBP2
DYNLT1
DONSON
DOLPP1
GPC6
KDM2B
ARRDC4
ASB6
PDZRN3
PGK1
ATP5F1B
ABLIM3
SEPTIN9
ATF6
CERCAM
MAB21L2
POR
POP5
RBPJ
CADM3
MSX1
EXOSC4
SH3BP2
JUP
MFSD10
UPF3A
PRRX1
SMPDL3A
ARHGAP22
MRPL20
PPCDC
RARG
PC
NINJ2
RHBDD1
BCL3
KATNB1
QPRT
PANK2
PTK2B
SQSTM1
KCNAB2
SHC1
TRIB1
CCDC174
RING1
MYLK4
MEIS2
ABHD2
CCNL2
ABCC10
IRF2BP2
SREBF1
MBNL3
ADAP1
ZNF687
SMARCD2
RFX1
CLCN3
SMIM28
MTMR4
LFNG
TMEM9
SMG6
KAZALD1
GATA4
MALRD1
DACT2
GPCPD1
NBPF1
ZFP36
PLEKHG2
CNOT2
MIDEAS
MRPL3
USP17L21
USP17L20
USP17L12
TRIM46
KRTCAP2
SLX1B
SLX1A
BOLA2B
BOLA2
NRL
ZNF367
PCGF2
TOP2A
PRKAG2
CALM2
RASSF5
SLC2A9
SPG7
PSPN
ALKBH7
SOCS3
NOL4L
EIF1B
HSPA1L
HSPA1A
HEXIM2
INHBE
GLI1
ANKHD1-EIF4EBP3
ANKHD1
PPP1R18
NRM
MRPS31
FURIN
NUBP1
THOP1
SGTA
SACM1L
DLG2
TRAF7
ANGPTL4
USP17L22
RHOQ
ATP6V1E2
PCNA
ITGAV
RPL34
ECEL1
STAT1
CRYAA2
CRYAA
NFKBIA
NOTCH2
RPLP1
ASXL3
ARHGAP30
IQSEC3
RAB26
POLDIP3
NR2F6
RNF103-CHMP3
RMND5A
HNMT
DNAH1
DCAF11
ZFAND2A
PDE4DIP
TRIM26
SSBP4
ZNF740
CSAD
PXYLP1
NAV3
CDS2
ARRDC2
ASCL1
OSBP
NLK
GRIK2
ATP1B1
GPR20
SHF
EIF2AK3
SKI
ZNF77
IL17RD
STIP1
RPS7
CSF3R
HMGCS1
PSMD6
SOD2
AHDC1
SERPINE1
LRATD2
STARD13
CLDN11
ART1
DSCAML1
TCP10L
TRIM7
HAND1
RGS3
SEPTIN4
ZC3H3
RAB37
ECE1
MDM2
GADD45G
SLC45A4
RAB11B
CAPG
ME3
KNL1
BRMS1
RBBP7
AGO1
ACYP1
TRIB3
GADD45A
G3BP1
ZNF564
MYBPC3
LPCAT3
KMT5A
IKBKB
NCOA2
BORCS6
HOXB4
EVI5L
GOT1
SPRED2
KDM8
RTN4
PIPOX
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
MACROH2A1
CCL26
EMP3
FTL
SOCS2
ELL
SH2D6
CBX4
RGS12
HNRNPD
LMO4
RBM15
STX1A
TNFAIP2
POLG
METRN
COL21A1
CTSW
ADM
SLC35E2B
FAM107B
SMIM20
PDP2
TPCN1
TCTEX1D4
SLC7A5
PLK3
BTBD19
CRLS1
ZNF827
SYNJ2
GRSF1
B4GAT1
SCGB1A1
METTL3
LMOD1
EVA1A
CORO1A
TCF7L2
MYRIP
MTF2
MIDN
PNKD
METTL11B
RBFOX2
MNT
MYEOV
ZC2HC1C
CPSF4L
KBTBD11
MOB3A
IZUMO4
MSX2
GLRX5
ANTKMT
NEK1
CP
CLDN9
FST
DAGLB
JUNB
RFX2
WSB2
SLC6A12
HOXD3
LCK
FAM167B
TMEM94
PYGL
CSNK1D
PLA2G2A
BFSP1
TUBA1C
SEC22B
CNKSR3
IFI16
ARHGEF3
UBE2F
TMEM212
SHB
ETF1
ARAP1
INAVA